Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0029485

Physical Location & Seq

Genomic Coordinates Forward (+)

7752893 .. 7754309

Gene Structure 1417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g10040.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAGAGAGAATCAATTTCGAGCAGTCCCTATCATCTTTTTGTTTTTCTTTGTCGTCAGTGTCTGCGATGCACTATACGGACCATCATCGCCAGTTCTTCAGCTAACTCCTTCCAACTTCAAGTCCAAGGTTCTGGACTCAAACAGAGTTGTTCTGGTTGAATTCTTTGCACCGTGGTGCGGACATTGTCAGGCTCTTACACCGATATGGGAGAAAGCGGCTACTGTCTTAAAGGGTGTGGCCGCCGTGGCAGCTCTTGATGCTGATGCACACAAGTCCCTCGCTCAGGAATATGGGATTAGAGGATTTCCAACAATAAAGGTGTTTGTCCCTGGAAAGCCTCCAGTTGACTATCAGGGAGCAAGGGATGTGAAACCCATTGCAGAATTTGCACTCCAACAGATAAAGGCGCTGTTGAAAGACCGCTTAAGTGGAAAAACAACAGGAGGATCAATCAGAAAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005788 GO:0005794 GO:0005886 GO:0006457 GO:0006950 GO:0008150 GO:0009505 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0030312 GO:0031974 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0070013 GO:0071944 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

156

Amino Acids

16.96

Weight (kDa)

9.51

Isoelectric Point (pI)

20.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029485)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g10040
rosa_samantha	Rh7CG056300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	180, 218, 243, 424
AclWI	GGATC	1 cut(s)	457
AcoI	YGGCCR	1 cut(s)	240
AcsI	RAATTY	2 cut(s)	161, 386
AcuI	CTGAAG	1 cut(s)	83
AfiI	CCNNNNNNNGG	2 cut(s)	179, 286
AflII	CTTAAG	1 cut(s)	427
AgsI	TTSAA	3 cut(s)	121, 161, 418
AjnI	CCWGG	1 cut(s)	331
AleI	CACNNNNGTG	1 cut(s)	175
AluBI	AGCT	2 cut(s)	103, 254
AluI	AGCT	2 cut(s)	103, 254
AlwI	GGATC	1 cut(s)	457
AlwNI	CAGNNNCTG	1 cut(s)	63
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	2 cut(s)	161, 386
AspLEI	GCGC	1 cut(s)	412
AspS9I	GGNCC	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	1 cut(s)	91
BceAI	ACGGC	1 cut(s)	230
BciT130I	CCWGG	1 cut(s)	333
BfoI	RGCGCY	1 cut(s)	413
BfrI	CTTAAG	1 cut(s)	427
BglI	GCCNNNNNGGC	1 cut(s)	248
BisI	GCNGC	3 cut(s)	219, 243, 252
BlsI	GCNGC	3 cut(s)	220, 244, 253
Bme1390I	CCNGG	1 cut(s)	333
Bme18I	GGWCC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	80
BmrFI	CCNGG	1 cut(s)	333
BmsI	GCATC	3 cut(s)	58, 250, 256
BpmI	CTGGAG	1 cut(s)	327
Bpu10I	CCTNAGC	1 cut(s)	285
BsaJI	CCNNGG	4 cut(s)	126, 173, 246, 331
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 286
Bse1I	ACTGG	2 cut(s)	92, 344
Bse3DI	GCAATG	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	333
BseDI	CCNNGG	4 cut(s)	126, 173, 246, 331
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	2 cut(s)	179, 286
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	1 cut(s)	299
BseNI	ACTGG	2 cut(s)	92, 344
BseXI	GCAGC	1 cut(s)	263
BshFI	GGCC	1 cut(s)	242
BslFI	GGGAC	3 cut(s)	11, 262, 314
BslI	CCNNNNNNNGG	2 cut(s)	179, 286
BsmFI	GGGAC	3 cut(s)	11, 262, 314
BsnI	GGCC	1 cut(s)	242
Bsp143I	GATC	1 cut(s)	449
BspACI	CCGC	4 cut(s)	180, 218, 243, 424
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	1 cut(s)	298
BspPI	GGATC	1 cut(s)	457
BspTI	CTTAAG	1 cut(s)	427
BsrDI	GCAATG	1 cut(s)	378
BsrI	ACTGG	2 cut(s)	92, 344
BssECI	CCNNGG	4 cut(s)	126, 173, 246, 331
BssMI	GATC	1 cut(s)	449
BssT1I	CCWWGG	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	2 cut(s)	174, 226
BstAFI	CTTAAG	1 cut(s)	427
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstDEI	CTNAG	1 cut(s)	285
BstDSI	CCRYGG	2 cut(s)	173, 246
BstENI	CCTNNNNNAGG	1 cut(s)	284
BstF5I	GGATG	1 cut(s)	373
BstH2I	RGCGCY	1 cut(s)	413
BstHHI	GCGC	1 cut(s)	412
BstKTI	GATC	1 cut(s)	452
BstMBI	GATC	1 cut(s)	449
BstMWI	GCNNNNNNNGC	4 cut(s)	248, 251, 260, 389
BstNI	CCWGG	1 cut(s)	333
BstSCI	CCNGG	1 cut(s)	331
BstV1I	GCAGC	1 cut(s)	263
BstXI	CCANNNNNNTGG	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	242
BtgI	CCRYGG	2 cut(s)	173, 246
BtgZI	GCGATG	2 cut(s)	72, 81
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	64
CaiI	CAGNNNCTG	1 cut(s)	63
CfoI	GCGC	1 cut(s)	412
Cfr13I	GGNCC	1 cut(s)	80
CviJI	RGCY	6 cut(s)	103, 194, 221, 242, 254, 340
CviKI_1	RGCY	6 cut(s)	103, 194, 221, 242, 254, 340
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	1 cut(s)	451
DpnII	GATC	1 cut(s)	449
EaeI	YGGCCR	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	80
Eco57I	CTGAAG	1 cut(s)	83
EcoNI	CCTNNNNNAGG	1 cut(s)	284
EcoRI	GAATTC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	331
EcoT14I	CCWWGG	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	126
FaiI	YATR	3 cut(s)	76, 208, 294
FaqI	GGGAC	3 cut(s)	11, 262, 314
Fnu4HI	GCNGC	3 cut(s)	219, 243, 252
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	3 cut(s)	219, 243, 252
GlaI	GCGC	1 cut(s)	411
GluI	GCNGC	3 cut(s)	219, 243, 252
GsuI	CTGGAG	1 cut(s)	327
HaeII	RGCGCY	1 cut(s)	413
HaeIII	GGCC	1 cut(s)	242
HhaI	GCGC	1 cut(s)	412
Hin6I	GCGC	1 cut(s)	410
HinP1I	GCGC	1 cut(s)	410
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	2 cut(s)	10, 137
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	2 cut(s)	458, 467
Hpy188III	TCNNGA	3 cut(s)	134, 257, 287
Hpy8I	GTNNAC	1 cut(s)	349
HpyAV	CCTTC	1 cut(s)	120
HpyCH4III	ACNGT	2 cut(s)	174, 226
HpyCH4V	TGCA	5 cut(s)	71, 170, 269, 383, 392
HpyF10VI	GCNNNNNNNGC	4 cut(s)	248, 251, 260, 389
HpyF3I	CTNAG	1 cut(s)	285
HspAI	GCGC	1 cut(s)	410
Kzo9I	GATC	1 cut(s)	449
LmnI	GCTCC	1 cut(s)	359
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	3 cut(s)	58, 250, 256
MalI	GATC	1 cut(s)	451
MboI	GATC	1 cut(s)	449
MboII	GAAGA	1 cut(s)	89
MluCI	AATT	3 cut(s)	14, 161, 386
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	3 cut(s)	138, 335, 421
MnlI	CCTC	4 cut(s)	290, 296, 351, 440
MseI	TTAA	2 cut(s)	230, 428
MslI	CAYNNNNRTG	2 cut(s)	175, 205
MspCI	CTTAAG	1 cut(s)	427
MspR9I	CCNGG	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	333
MwoI	GCNNNNNNNGC	4 cut(s)	248, 251, 260, 389
NdeII	GATC	1 cut(s)	449
OliI	CACNNNNGTG	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	10
PflFI	GACNNNGTC	1 cut(s)	186
PkrI	GCNGC	3 cut(s)	220, 244, 253
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PspPI	GGNCC	1 cut(s)	80
PstNI	CAGNNNCTG	1 cut(s)	63
PsyI	GACNNNGTC	1 cut(s)	186
RseI	CAYNNNNRTG	2 cut(s)	175, 205
SaqAI	TTAA	2 cut(s)	230, 428
SatI	GCNGC	3 cut(s)	219, 243, 252
Sau3AI	GATC	1 cut(s)	449
Sau96I	GGNCC	1 cut(s)	80
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	333
SetI	ASST	4 cut(s)	105, 132, 256, 324
SfaNI	GCATC	3 cut(s)	58, 250, 256
SinI	GGWCC	1 cut(s)	80
SmiMI	CAYNNNNRTG	2 cut(s)	175, 205
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
Sse9I	AATT	3 cut(s)	14, 161, 386
SsiI	CCGC	4 cut(s)	180, 218, 243, 424
StyD4I	CCNGG	1 cut(s)	331
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	2 cut(s)	174, 226
TaqI	TCGA	1 cut(s)	19
TasI	AATT	3 cut(s)	14, 161, 386
TauI	GCSGC	2 cut(s)	221, 245
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	2 cut(s)	230, 428
Tru9I	TTAA	2 cut(s)	230, 428
TscAI	CASTG	1 cut(s)	64
TseI	GCWGC	1 cut(s)	251
TspGWI	ACGGA	1 cut(s)	93
TspRI	CASTG	1 cut(s)	64
Tth111I	GACNNNGTC	1 cut(s)	186
Vha464I	CTTAAG	1 cut(s)	427
VpaK11BI	GGWCC	1 cut(s)	80
XagI	CCTNNNNNAGG	1 cut(s)	284
XapI	RAATTY	2 cut(s)	161, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.