Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0029485

Physical Location & Seq

Genomic Coordinates Forward (+)

4132565 .. 4133032

Gene Structure 468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG056300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAGAGAGAAGCAATTTCGAGCTGTACCAATCTTCTTCTTCTTCTTGTTCTTCGTCTTCAATGTCTGTGATGCACTGTACGGACCATCATCACCAGTGCTTCAGCTGACTCCCTCCAACTTCAAGTCCAAGGTTCTGGACTCGAACAGAGTTGTTCTGGTTAAATTCTATGCGCCGTGGTGTGAACATAGTCAAGCTCTGACTCCTATATGGGAGAAAGCGGCTACTTTGTTGAAGGGTGTGGTCACCGTTGCTGCTCTTGATGCTGATGCGCACAAGTCCCTTGCTCAGGATTATGGGATTAGAGGATTCCCAATGGTAAAGGTGTTCGTACGTGGAAAGCCTCCAGTTATTTATCAGGGAGCAAGAGATGCGAAACTCATTGCAGAATTTGCACTCTTACAGGTACTTGGTAAGTTAGAGAGAGATGTTAGAGCGAGACTGCATGAAAATTCTGAGATGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005788 GO:0005794 GO:0005886 GO:0006457 GO:0006950 GO:0008150 GO:0009505 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0030312 GO:0031974 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0070013 GO:0071944 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

155

Amino Acids

17.53

Weight (kDa)

9.58

Isoelectric Point (pI)

26.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	33 - 130	4.2e-26	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0029485)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g10040
rosa_samantha	Rh7CG056300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	273
AciI	CCGC	1 cut(s)	221
AcsI	RAATTY	3 cut(s)	164, 389, 451
AcuI	CTGAAG	1 cut(s)	86
AfaI	GTAC	4 cut(s)	27, 80, 333, 408
AfiI	CCNNNNNNNGG	1 cut(s)	289
AgsI	TTSAA	3 cut(s)	61, 124, 235
AluBI	AGCT	3 cut(s)	23, 106, 197
AluI	AGCT	3 cut(s)	23, 106, 197
Alw26I	GTCTC	1 cut(s)	433
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	3 cut(s)	164, 389, 451
AspLEI	GCGC	2 cut(s)	175, 274
AspS9I	GGNCC	1 cut(s)	83
AsuHPI	GGTGA	2 cut(s)	84, 238
AvaII	GGWCC	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	1 cut(s)	94
BceAI	ACGGC	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	433
BisI	GCNGC	2 cut(s)	222, 255
BlsI	GCNGC	2 cut(s)	223, 256
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	83
BmsI	GCATC	4 cut(s)	61, 253, 259, 361
BpiI	GAAGAC	1 cut(s)	49
BpmI	CTGGAG	1 cut(s)	330
Bpu10I	CCTNAGC	1 cut(s)	288
BsaAI	YACGTR	1 cut(s)	335
BsaJI	CCNNGG	2 cut(s)	129, 176
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse1I	ACTGG	2 cut(s)	95, 347
Bse3DI	GCAATG	1 cut(s)	381
BseDI	CCNNGG	2 cut(s)	129, 176
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	2 cut(s)	302, 447
BseNI	ACTGG	2 cut(s)	95, 347
BseXI	GCAGC	1 cut(s)	241
BsiWI	CGTACG	1 cut(s)	331
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	1 cut(s)	289
BsmAI	GTCTC	1 cut(s)	433
BsmFI	GGGAC	1 cut(s)	265
BspACI	CCGC	1 cut(s)	221
BspCNI	CTCAG	2 cut(s)	301, 448
BsrDI	GCAATG	1 cut(s)	381
BsrI	ACTGG	2 cut(s)	95, 347
BssECI	CCNNGG	2 cut(s)	129, 176
BssT1I	CCWWGG	1 cut(s)	129
Bst4CI	ACNGT	2 cut(s)	78, 250
BstAPI	GCANNNNNTGC	2 cut(s)	371, 392
BstBAI	YACGTR	1 cut(s)	335
BstDEI	CTNAG	2 cut(s)	288, 456
BstDSI	CCRYGG	1 cut(s)	176
BstEII	GGTNACC	1 cut(s)	244
BstENI	CCTNNNNNAGG	1 cut(s)	287
BstHHI	GCGC	2 cut(s)	175, 274
BstMAI	GTCTC	1 cut(s)	433
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 371, 392
BstPI	GGTNACC	1 cut(s)	244
BstV1I	GCAGC	1 cut(s)	241
BstV2I	GAAGAC	1 cut(s)	49
BstXI	CCANNNNNNTGG	1 cut(s)	136
BtgI	CCRYGG	1 cut(s)	176
BtsIMutI	CAGTG	2 cut(s)	74, 102
CfoI	GCGC	2 cut(s)	175, 274
Cfr13I	GGNCC	1 cut(s)	83
Csp6I	GTAC	4 cut(s)	26, 79, 332, 407
CviAII	CATG	1 cut(s)	446
CviJI	RGCY	5 cut(s)	23, 106, 197, 224, 343
CviKI_1	RGCY	5 cut(s)	23, 106, 197, 224, 343
CviQI	GTAC	4 cut(s)	26, 79, 332, 407
DdeI	CTNAG	2 cut(s)	288, 456
Eco130I	CCWWGG	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	86
Eco91I	GGTNACC	1 cut(s)	244
EcoNI	CCTNNNNNAGG	1 cut(s)	287
EcoO65I	GGTNACC	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	1 cut(s)	449
FaiI	YATR	6 cut(s)	171, 189, 209, 211, 297, 447
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	1 cut(s)	445
Fnu4HI	GCNGC	2 cut(s)	222, 255
Fsp4HI	GCNGC	2 cut(s)	222, 255
FspAI	RTGCGCAY	1 cut(s)	273
FspI	TGCGCA	1 cut(s)	273
GlaI	GCGC	2 cut(s)	174, 273
GluI	GCNGC	2 cut(s)	222, 255
GsuI	CTGGAG	1 cut(s)	330
HhaI	GCGC	2 cut(s)	175, 274
Hin1II	CATG	1 cut(s)	449
Hin6I	GCGC	2 cut(s)	173, 272
HinP1I	GCGC	2 cut(s)	173, 272
HinfI	GANTC	4 cut(s)	109, 140, 202, 309
HphI	GGTGA	2 cut(s)	84, 238
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188I	TCNGA	2 cut(s)	201, 457
Hpy188III	TCNNGA	3 cut(s)	137, 260, 290
Hpy8I	GTNNAC	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	2 cut(s)	78, 250
HpyCH4IV	ACGT	1 cut(s)	334
HpyCH4V	TGCA	4 cut(s)	74, 386, 395, 445
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 371, 392
HpyF3I	CTNAG	2 cut(s)	288, 456
HpySE526I	ACGT	1 cut(s)	334
Hsp92II	CATG	1 cut(s)	449
HspAI	GCGC	2 cut(s)	173, 272
LmnI	GCTCC	1 cut(s)	362
LpnPI	CCDG	7 cut(s)	108, 122, 143, 275, 344, 360, 389
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	4 cut(s)	61, 253, 259, 361
MaeII	ACGT	1 cut(s)	334
MaeIII	GTNAC	1 cut(s)	244
MboII	GAAGA	6 cut(s)	25, 28, 31, 34, 43, 49
MluCI	AATT	4 cut(s)	14, 164, 389, 451
MlyI	GAGTC	3 cut(s)	103, 134, 196
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	3 cut(s)	124, 299, 354
MseI	TTAA	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	106
MwoI	GCNNNNNNNGC	3 cut(s)	263, 371, 392
NlaIII	CATG	1 cut(s)	449
NmuCI	GTSAC	1 cut(s)	244
NsbI	TGCGCA	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	309
Pfl23II	CGTACG	1 cut(s)	331
PkrI	GCNGC	2 cut(s)	223, 256
PleI	GAGTC	3 cut(s)	103, 134, 196
PpsI	GAGTC	3 cut(s)	103, 134, 196
Ppu21I	YACGTR	1 cut(s)	335
PspEI	GGTNACC	1 cut(s)	244
PspLI	CGTACG	1 cut(s)	331
PspPI	GGNCC	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	106
RsaI	GTAC	4 cut(s)	27, 80, 333, 408
RsaNI	GTAC	4 cut(s)	26, 79, 332, 407
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	2 cut(s)	222, 255
Sau96I	GGNCC	1 cut(s)	83
SchI	GAGTC	3 cut(s)	103, 134, 196
SetI	ASST	7 cut(s)	25, 108, 135, 199, 327, 337, 408
SfaNI	GCATC	4 cut(s)	61, 253, 259, 361
SinI	GGWCC	1 cut(s)	83
Sse9I	AATT	4 cut(s)	14, 164, 389, 451
SsiI	CCGC	1 cut(s)	221
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	78, 250
TaiI	ACGT	1 cut(s)	337
TaqI	TCGA	2 cut(s)	19, 143
TasI	AATT	4 cut(s)	14, 164, 389, 451
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	1 cut(s)	309
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	2 cut(s)	81, 102
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	1 cut(s)	462
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	2 cut(s)	81, 102
VpaK11BI	GGWCC	1 cut(s)	83
XagI	CCTNNNNNAGG	1 cut(s)	287
XapI	RAATTY	3 cut(s)	164, 389, 451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.