pycom17g11980

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0024708
Physical Location & Seq
Reverse (-)
9773511 .. 9774776
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1086 bp
ATGAGGCTGAGATCACTAGGTGAAAAGGGAAGCCAAGTCTTCAACCAAAATCTGAAGATTACCCGGTTGGGGAAGTCTGGTAGGATCGACGAAGCGGTTAAAGTTTTCTCACAAATGACTCAGAGGAACACAGTAACATACAATTCTATGATCTCTGCTTATGCTAAGAATGGTAGAGTTGGTAACGCGCGCCAACTGTTTGATCAAATGCCGCACAGAAACTTGGTTTCTTGGAACACTATGATTTCCGGGTACCTGCACAATGGCGAGGTCGAGGAAGCTTATAGGATTTTTATTGACATGCCGGAAAGAGGCCTTTACTCGTGGACTTTGATGATATCTTGCTATACACGTAGTGGCGAGCTTGAGAGCTATTTGATTTGGTATAAGAAAAATGGGGAGATGCGGCTGGGAGTGAAGTTTTTTGAGGAAATGCCTGAGAGGAATGTGGTTTCGTGGAATCTGATGTTGGATGGGTTTGTTGAGGTTGGTGATTTGGATTCTGCTTGGAAGTTCTTTAAGAAGATTCCAGACCCGAATGTGGCAGAGGATCTCTTTGACCAGATGCCAAGTAGAAATGTGGTTTCTTGGAATGCAATGCTTGGAGCCTATGTTCGAGACCACCAAATTGACAAGGCTGTTAAATTATTCAAGGATATGCCCGAGAGGGATTCTGTGTCGTGGACAACAATGATCAATGGGTATGTACGTATTGGTAAGCTTGACGAAGCAAGGCAATTGCTTAACCAAATGCCATACAAGAACATTGCAGCACAAACAGCAATGATGTCTGGATACGTGCAAAATGGAAGGATGGATGAAGCAAGCAAGATCTTCAGTCCCATTTCCATCTGTGATGCTGTTTGTTGGAACACAATGATTGCAGGCTATGCTCAGTGTGGGAAAATGGTTGAAGCCCTATCTCTTTTCCGAAATATGATTAACAAGGACATTGTTTCTTGGAATACTATGATTACTGGTTACGCTCAAACAGGACAAATGGATAAAGCAGTTGAAATCTTTGAGTCGATGGATGAGAGGATTGGTTGCATGGTTGATCAACCGAGCAGGTTATGTGCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

362

Amino Acids

41.43

Weight (kDa)

8.1

Isoelectric Point (pI)

31.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 42 - 70 1.5e-09 PPR repeat
PPR_2 PF13041 42 - 75 6.1e-09 PPR repeat family
PPR PF01535 45 - 74 6.2e-09 PPR repeat
PPR_2 PF13041 74 - 114 8.1e-10 PPR repeat family
PPR PF01535 76 - 106 1.6e-09 PPR repeat
PPR_2 PF13041 148 - 177 7.7e-06 PPR repeat family
PPR_2 PF13041 192 - 223 2.9e-08 PPR repeat family
PPR PF01535 195 - 223 7.2e-07 PPR repeat
PPR_1 PF12854 223 - 251 3e-07 PPR repeat
PPR_2 PF13041 224 - 256 5.4e-08 PPR repeat family
PPR PF01535 226 - 255 4.1e-08 PPR repeat
PPR_2 PF13041 286 - 317 2.9e-07 PPR repeat family
PPR_1 PF12854 286 - 313 8.6e-06 PPR repeat
PPR PF01535 288 - 317 8.1e-09 PPR repeat
PPR_2 PF13041 316 - 350 5.7e-09 PPR repeat family
PPR_1 PF12854 317 - 344 3.6e-06 PPR repeat
PPR PF01535 319 - 347 4.9e-09 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024708)

Species Orthologous Gene IDs
pyrus_communis pycom17g11980
rosa_laevigata RLG00000009646
rosa_multiflora Rmu_co8393283.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 264, 1059
Acc65I GGTACC 1 cut(s) 252
AccB1I GGYRCC 1 cut(s) 252
AccII CGCG 2 cut(s) 188, 190
AciI CCGC 3 cut(s) 95, 212, 406
AclWI GGATC 2 cut(s) 92, 558
AcuI CTGAAG 2 cut(s) 74, 820
AdeI CACNNNGTG 2 cut(s) 20, 356
AfaI GTAC 2 cut(s) 254, 708
AfiI CCNNNNNNNGG 3 cut(s) 69, 311, 541
AflIII ACRYGT 1 cut(s) 350
AgsI TTSAA 4 cut(s) 43, 652, 914, 1016
AjuI GAANNNNNNNTTGG 2 cut(s) 452, 484
AloI GAACNNNNNNTCC 2 cut(s) 597, 629
AluBI AGCT 4 cut(s) 281, 364, 372, 721
AluI AGCT 4 cut(s) 281, 364, 372, 721
Alw26I GTCTC 1 cut(s) 612
AlwI GGATC 2 cut(s) 92, 558
Ama87I CYCGRG 1 cut(s) 662
AoxI GGCC 1 cut(s) 313
ApeKI GCWGC 1 cut(s) 770
Asp718I GGTACC 1 cut(s) 252
AspLEI GCGC 2 cut(s) 190, 192
AsuC2I CCSGG 2 cut(s) 64, 250
AsuHPI GGTGA 2 cut(s) 32, 503
AvaI CYCGRG 1 cut(s) 662
BanI GGYRCC 1 cut(s) 252
BauI CACGAG 1 cut(s) 322
BbsI GAAGAC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 782
BccI CCATC 4 cut(s) 467, 808, 857, 1024
BciVI GTATCC 1 cut(s) 788
BclI TGATCA 3 cut(s) 202, 693, 1057
BcnI CCSGG 2 cut(s) 64, 250
BcoDI GTCTC 1 cut(s) 612
BfaI CTAG 1 cut(s) 17
BfuAI ACCTGC 2 cut(s) 264, 1059
BfuI GTATCC 1 cut(s) 788
BglII AGATCT 1 cut(s) 831
BisI GCNGC 3 cut(s) 212, 407, 771
BlsI GCNGC 3 cut(s) 213, 408, 772
Bme1390I CCNGG 2 cut(s) 64, 250
BmeT110I CYCGRG 1 cut(s) 662
BmiI GGNNCC 2 cut(s) 254, 607
BmrFI CCNGG 2 cut(s) 64, 250
BmsI GCATC 3 cut(s) 393, 555, 847
BpiI GAAGAC 1 cut(s) 31
BpuEI CTTGAG 1 cut(s) 386
BpuMI CCSGG 2 cut(s) 64, 250
BsaAI YACGTR 3 cut(s) 353, 710, 799
BsaI GGTCTC 1 cut(s) 612
BsaXI ACNNNNNCTCC 2 cut(s) 597, 627
Bsc4I CCNNNNNNNGG 3 cut(s) 69, 311, 541
Bse1I ACTGG 1 cut(s) 982
Bse3DI GCAATG 3 cut(s) 603, 765, 789
BseGI GGATG 4 cut(s) 478, 819, 823, 1039
BseLI CCNNNNNNNGG 3 cut(s) 69, 311, 541
BseMI GCAATG 3 cut(s) 603, 765, 789
BseMII CTCAG 3 cut(s) 134, 429, 908
BseNI ACTGG 1 cut(s) 982
BsePI GCGCGC 1 cut(s) 188
BseXI GCAGC 1 cut(s) 782
BseYI CCCAGC 1 cut(s) 409
BsgI GTGCAG 1 cut(s) 242
Bsh1236I CGCG 2 cut(s) 188, 190
BshFI GGCC 1 cut(s) 315
BshNI GGYRCC 1 cut(s) 252
BsiHKCI CYCGRG 1 cut(s) 662
BsiSI CCGG 3 cut(s) 64, 249, 305
BslFI GGGAC 1 cut(s) 825
BslI CCNNNNNNNGG 3 cut(s) 69, 311, 541
BsmAI GTCTC 1 cut(s) 612
BsmFI GGGAC 1 cut(s) 825
BsmI GAATGC 1 cut(s) 598
BsnI GGCC 1 cut(s) 315
Bso31I GGTCTC 1 cut(s) 612
BsoBI CYCGRG 1 cut(s) 662
Bsp143I GATC 8 cut(s) 11, 84, 150, 202, 550, 693, 831, 1057
BspACI CCGC 3 cut(s) 95, 212, 406
BspANI GGCC 1 cut(s) 315
BspCNI CTCAG 3 cut(s) 133, 430, 907
BspFNI CGCG 2 cut(s) 188, 190
BspLI GGNNCC 2 cut(s) 254, 607
BspMI ACCTGC 2 cut(s) 264, 1059
BspPI GGATC 2 cut(s) 92, 558
BspT107I GGYRCC 1 cut(s) 252
BspTNI GGTCTC 1 cut(s) 612
BsrDI GCAATG 3 cut(s) 603, 765, 789
BsrI ACTGG 1 cut(s) 982
BssHII GCGCGC 1 cut(s) 188
BssMI GATC 8 cut(s) 11, 84, 150, 202, 550, 693, 831, 1057
BssSI CACGAG 1 cut(s) 322
Bst2BI CACGAG 1 cut(s) 322
Bst4CI ACNGT 2 cut(s) 133, 198
BstAPI GCANNNNNTGC 1 cut(s) 890
BstBAI YACGTR 3 cut(s) 353, 710, 799
BstC8I GCNNGC 4 cut(s) 190, 362, 826, 886
BstDEI CTNAG 5 cut(s) 8, 120, 165, 438, 894
BstF5I GGATG 4 cut(s) 478, 819, 823, 1039
BstFNI CGCG 2 cut(s) 188, 190
BstHHI GCGC 2 cut(s) 190, 192
BstKTI GATC 8 cut(s) 14, 87, 153, 205, 553, 696, 834, 1060
BstMAI GTCTC 1 cut(s) 612
BstMBI GATC 8 cut(s) 11, 84, 150, 202, 550, 693, 831, 1057
BstMWI GCNNNNNNNGC 2 cut(s) 779, 890
BstNSI RCATGY 1 cut(s) 304
BstSCI CCNGG 2 cut(s) 62, 248
BstSNI TACGTA 1 cut(s) 710
BstUI CGCG 2 cut(s) 188, 190
BstV1I GCAGC 1 cut(s) 782
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 2 cut(s) 550, 831
BstYI RGATCY 2 cut(s) 550, 831
BsuI GTATCC 1 cut(s) 788
BsuRI GGCC 1 cut(s) 315
BtsCI GGATG 4 cut(s) 478, 819, 823, 1039
BtsIMutI CAGTG 1 cut(s) 902
BveI ACCTGC 2 cut(s) 264, 1059
Cac8I GCNNGC 4 cut(s) 190, 362, 826, 886
CfoI GCGC 2 cut(s) 190, 192
Csp6I GTAC 2 cut(s) 253, 707
CviAII CATG 2 cut(s) 301, 1051
CviQI GTAC 2 cut(s) 253, 707
DdeI CTNAG 5 cut(s) 8, 120, 165, 438, 894
DpnI GATC 8 cut(s) 13, 86, 152, 204, 552, 695, 833, 1059
DpnII GATC 8 cut(s) 11, 84, 150, 202, 550, 693, 831, 1057
DraIII CACNNNGTG 2 cut(s) 20, 356
Eco105I TACGTA 1 cut(s) 710
Eco147I AGGCCT 1 cut(s) 315
Eco31I GGTCTC 1 cut(s) 612
Eco32I GATATC 1 cut(s) 339
Eco57I CTGAAG 2 cut(s) 74, 820
Eco88I CYCGRG 1 cut(s) 662
EcoRV GATATC 1 cut(s) 339
FaeI CATG 2 cut(s) 304, 1054
FaqI GGGAC 1 cut(s) 825
FatI CATG 2 cut(s) 300, 1050
FbaI TGATCA 3 cut(s) 202, 693, 1057
Fnu4HI GCNGC 3 cut(s) 212, 407, 771
FokI GGATG 4 cut(s) 485, 826, 830, 1046
Fsp4HI GCNGC 3 cut(s) 212, 407, 771
FspBI CTAG 1 cut(s) 17
GlaI GCGC 2 cut(s) 189, 191
GluI GCNGC 3 cut(s) 212, 407, 771
GsaI CCCAGC 1 cut(s) 413
HaeIII GGCC 1 cut(s) 315
HapII CCGG 3 cut(s) 64, 249, 305
HhaI GCGC 2 cut(s) 190, 192
Hin1II CATG 2 cut(s) 304, 1054
Hin6I GCGC 2 cut(s) 188, 190
HinP1I GCGC 2 cut(s) 188, 190
HindIII AAGCTT 2 cut(s) 279, 719
HinfI GANTC 6 cut(s) 118, 460, 500, 526, 671, 1025
HpaII CCGG 3 cut(s) 64, 249, 305
HphI GGTGA 2 cut(s) 32, 503
Hpy166II GTNNAC 2 cut(s) 327, 684
Hpy188I TCNGA 4 cut(s) 54, 123, 465, 932
Hpy188III TCNNGA 3 cut(s) 530, 617, 792
Hpy8I GTNNAC 2 cut(s) 327, 684
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 804
HpyCH4III ACNGT 2 cut(s) 133, 198
HpyCH4IV ACGT 3 cut(s) 352, 709, 798
HpyCH4V TGCA 7 cut(s) 259, 596, 770, 802, 884, 1050, 1079
HpyF10VI GCNNNNNNNGC 2 cut(s) 779, 890
HpyF3I CTNAG 5 cut(s) 8, 120, 165, 438, 894
HpySE526I ACGT 3 cut(s) 352, 709, 798
Hsp92II CATG 2 cut(s) 304, 1054
HspAI GCGC 2 cut(s) 188, 190
KpnI GGTACC 1 cut(s) 256
Ksp22I TGATCA 3 cut(s) 202, 693, 1057
Kzo9I GATC 8 cut(s) 11, 84, 150, 202, 550, 693, 831, 1057
LmnI GCTCC 1 cut(s) 605
Lsp1109I GCAGC 1 cut(s) 782
LweI GCATC 3 cut(s) 393, 555, 847
MaeI CTAG 1 cut(s) 17
MaeII ACGT 3 cut(s) 352, 709, 798
MaeIII GTNAC 3 cut(s) 133, 182, 980
MalI GATC 8 cut(s) 13, 86, 152, 204, 552, 695, 833, 1059
MboI GATC 8 cut(s) 11, 84, 150, 202, 550, 693, 831, 1057
MboII GAAGA 4 cut(s) 31, 67, 535, 826
MfeI CAATTG 1 cut(s) 737
MflI RGATCY 2 cut(s) 550, 831
MluCI AATT 4 cut(s) 142, 627, 644, 737
MlyI GAGTC 2 cut(s) 112, 1034
MmeI TCCRAC 2 cut(s) 450, 848
MseI TTAA 5 cut(s) 99, 519, 642, 744, 942
MspI CCGG 3 cut(s) 64, 249, 305
MspR9I CCNGG 2 cut(s) 64, 250
MunI CAATTG 1 cut(s) 737
Mva1269I GAATGC 1 cut(s) 598
MvnI CGCG 2 cut(s) 188, 190
MwoI GCNNNNNNNGC 2 cut(s) 779, 890
NciI CCSGG 2 cut(s) 64, 250
NdeII GATC 8 cut(s) 11, 84, 150, 202, 550, 693, 831, 1057
NlaIII CATG 2 cut(s) 304, 1054
NlaIV GGNNCC 2 cut(s) 254, 607
NspI RCATGY 1 cut(s) 304
PauI GCGCGC 1 cut(s) 188
PceI AGGCCT 1 cut(s) 315
PctI GAATGC 1 cut(s) 598
PfeI GAWTC 4 cut(s) 460, 500, 526, 671
PkrI GCNGC 3 cut(s) 213, 408, 772
PleI GAGTC 2 cut(s) 112, 1033
PpsI GAGTC 2 cut(s) 112, 1033
Ppu21I YACGTR 3 cut(s) 353, 710, 799
PspFI CCCAGC 1 cut(s) 409
PspN4I GGNNCC 2 cut(s) 254, 607
PsuI RGATCY 2 cut(s) 550, 831
PteI GCGCGC 1 cut(s) 188
RsaI GTAC 2 cut(s) 254, 708
RsaNI GTAC 2 cut(s) 253, 707
SaqAI TTAA 5 cut(s) 99, 519, 642, 744, 942
SatI GCNGC 3 cut(s) 212, 407, 771
Sau3AI GATC 8 cut(s) 11, 84, 150, 202, 550, 693, 831, 1057
SchI GAGTC 2 cut(s) 112, 1034
ScrFI CCNGG 2 cut(s) 64, 250
SfaNI GCATC 3 cut(s) 393, 555, 847
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
SnaBI TACGTA 1 cut(s) 710
Sse9I AATT 4 cut(s) 142, 627, 644, 737
SseBI AGGCCT 1 cut(s) 315
SsiI CCGC 3 cut(s) 95, 212, 406
SspMI CTAG 1 cut(s) 17
StuI AGGCCT 1 cut(s) 315
StyD4I CCNGG 2 cut(s) 62, 248
TaaI ACNGT 2 cut(s) 133, 198
TaiI ACGT 3 cut(s) 355, 712, 801
TaqI TCGA 4 cut(s) 87, 273, 616, 1028
TasI AATT 4 cut(s) 142, 627, 644, 737
TauI GCSGC 2 cut(s) 214, 409
TfiI GAWTC 4 cut(s) 460, 500, 526, 671
Tru1I TTAA 5 cut(s) 99, 519, 642, 744, 942
Tru9I TTAA 5 cut(s) 99, 519, 642, 744, 942
TscAI CASTG 1 cut(s) 902
TseI GCWGC 1 cut(s) 770
TspDTI ATGAA 1 cut(s) 834
TspRI CASTG 1 cut(s) 902
XceI RCATGY 1 cut(s) 304
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.