Rmu_co8393283.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8393283.1
OG0024708
Physical Location & Seq
Forward (+)
159 .. 1230
1072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8393283.1_g000001.1.cds

Sequence Viewer

Length: 1072 bp
atgcagtacaagacaatgacgaccagagcaattggtgaaaagggcagcagccaagtattcatccaaaatctcaagattacccagttggggaagtcaggccgaatcgacgaagcagtcaaagttttctcacaaatgactcaaaggaacaccgtcacatacaactccatgatctccgcctacgccaagaacggtagactcggccatgcacgccacctgttcgataatatgtctcacagaaacttggtttcttggaacactatgattgcagggtacctgcacagtaatatggtggaggatgcttatgggctttttgttcacatgccacaaagagaccttttctcttggactttgatgattacttgctacacacgtaacggcgagcttgacagagccagacagctgttcagtttgcttccggataagcgggacccggcttgttggaatgctatgattgcagggtatgtgaagaagaggaggtttgaggatgcgaagagaatgtttgatgaaatgccggtgaagaacttagtttcttggaattcgatgctagcggggtatactaagaatggggagatgtgtttgggggtgaagttttttgaggagatgccggagaggaatgtggtttcgtggaatttgatgctggatggatttgttcaggttggtgagttggataatgcttggaagttttttgagaagattccggagcctaatgttgtttcgtgggtgacaatgttgtgtgggtttgcgcaaaatgggaagattgcgcaggcggaggatctgtttgagaagatgccgagtagaagtgtggttgcttggaatgcaatgcttgcagcctatgtacaagaccgccgaattgacaaggctgttgaaatattcagggatatgccggagatggattcagtgtcgtggactacaatgatcaatgggtatgttcgcgttggcaagcttgacgaagcaaggcagttgctcaaccggatgccatacaggaacattgcagcacaaacagcaatgatatctggatatgctcataatggaaggatggatgaagcaagtcagatcttcaatcagattgcca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

357

Amino Acids

41.07

Weight (kDa)

9.02

Isoelectric Point (pI)

35.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024708)

Species Orthologous Gene IDs
pyrus_communis pycom17g11980
rosa_laevigata RLG00000009646
rosa_multiflora Rmu_co8393283.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 113
Acc16I TGCGCA 2 cut(s) 744, 762
Acc36I ACCTGC 1 cut(s) 282
Acc65I GGTACC 1 cut(s) 270
AccB1I GGYRCC 1 cut(s) 270
AccI GTMKAC 2 cut(s) 193, 554
AccII CGCG 1 cut(s) 933
AccIII TCCGGA 2 cut(s) 415, 697
AciI CCGC 5 cut(s) 174, 424, 548, 767, 844
AclWI GGATC 1 cut(s) 780
AcoI YGGCCR 1 cut(s) 199
AcsI RAATTY 2 cut(s) 535, 628
AfaI GTAC 3 cut(s) 8, 272, 837
AfiI CCNNNNNNNGG 1 cut(s) 87
AflIII ACRYGT 1 cut(s) 368
AgsI TTSAA 2 cut(s) 866, 1060
AluBI AGCT 3 cut(s) 382, 400, 943
AluI AGCT 3 cut(s) 382, 400, 943
Alw26I GTCTC 2 cut(s) 234, 324
AlwI GGATC 1 cut(s) 780
Aor13HI TCCGGA 2 cut(s) 415, 697
AoxI GGCC 2 cut(s) 97, 199
ApeKI GCWGC 4 cut(s) 45, 48, 827, 992
ApoI RAATTY 2 cut(s) 535, 628
Asp718I GGTACC 1 cut(s) 270
AspLEI GCGC 2 cut(s) 745, 763
AspS9I GGNCC 1 cut(s) 427
AsuC2I CCSGG 1 cut(s) 431
AsuHPI GGTGA 5 cut(s) 47, 526, 595, 671, 733
AsuNHI GCTAGC 1 cut(s) 544
AvaII GGWCC 1 cut(s) 427
BanI GGYRCC 1 cut(s) 270
BbvI GCAGC 4 cut(s) 57, 60, 839, 1004
BccI CCATC 3 cut(s) 635, 883, 1030
BceAI ACGGC 1 cut(s) 391
BclI TGATCA 1 cut(s) 915
BcnI CCSGG 1 cut(s) 431
BcoDI GTCTC 2 cut(s) 234, 324
BfaI CTAG 1 cut(s) 545
BfuAI ACCTGC 1 cut(s) 282
BglII AGATCT 1 cut(s) 1053
BisI GCNGC 4 cut(s) 46, 49, 828, 993
BlsI GCNGC 4 cut(s) 47, 50, 829, 994
Bme1390I CCNGG 1 cut(s) 431
Bme18I GGWCC 1 cut(s) 427
BmgT120I GGNCC 1 cut(s) 427
BmiI GGNNCC 4 cut(s) 272, 428, 429, 702
BmrFI CCNGG 1 cut(s) 431
BmrI ACTGGG 1 cut(s) 76
BmsI GCATC 7 cut(s) 286, 475, 531, 591, 624, 777, 963
BmtI GCTAGC 1 cut(s) 548
BmuI ACTGGG 1 cut(s) 76
BpuEI CTTGAG 1 cut(s) 56
BpuMI CCSGG 1 cut(s) 431
BsaAI YACGTR 1 cut(s) 371
BsaI GGTCTC 1 cut(s) 324
BsaWI WCCGGW 3 cut(s) 415, 697, 969
BsaXI ACNNNNNCTCC 2 cut(s) 761, 791
Bsc4I CCNNNNNNNGG 1 cut(s) 87
Bse118I RCCGGY 1 cut(s) 511
Bse1I ACTGG 1 cut(s) 82
Bse3DI GCAATG 3 cut(s) 825, 987, 1011
BseAI TCCGGA 2 cut(s) 415, 697
BseGI GGATG 7 cut(s) 60, 301, 490, 646, 978, 1041, 1045
BseLI CCNNNNNNNGG 1 cut(s) 87
BseMI GCAATG 3 cut(s) 825, 987, 1011
BseNI ACTGG 1 cut(s) 82
BseRI GAGGAG 2 cut(s) 487, 611
BseXI GCAGC 4 cut(s) 57, 60, 839, 1004
BsgI GTGCAG 1 cut(s) 260
Bsh1236I CGCG 1 cut(s) 933
BshFI GGCC 2 cut(s) 99, 201
BshNI GGYRCC 1 cut(s) 270
BsiSI CCGG 7 cut(s) 416, 431, 512, 605, 698, 884, 970
BslFI GGGAC 1 cut(s) 440
BslI CCNNNNNNNGG 1 cut(s) 87
BsmAI GTCTC 2 cut(s) 234, 324
BsmFI GGGAC 1 cut(s) 440
BsmI GAATGC 2 cut(s) 448, 820
BsnI GGCC 2 cut(s) 99, 201
Bso31I GGTCTC 1 cut(s) 324
Bsp13I TCCGGA 2 cut(s) 415, 697
Bsp1407I TGTACA 1 cut(s) 835
Bsp143I GATC 4 cut(s) 168, 772, 915, 1053
BspACI CCGC 5 cut(s) 174, 424, 548, 767, 844
BspANI GGCC 2 cut(s) 99, 201
BspEI TCCGGA 2 cut(s) 415, 697
BspFNI CGCG 1 cut(s) 933
BspLI GGNNCC 4 cut(s) 272, 428, 429, 702
BspMI ACCTGC 1 cut(s) 282
BspOI GCTAGC 1 cut(s) 548
BspPI GGATC 1 cut(s) 780
BspT107I GGYRCC 1 cut(s) 270
BspTNI GGTCTC 1 cut(s) 324
BsrDI GCAATG 3 cut(s) 825, 987, 1011
BsrFI RCCGGY 1 cut(s) 511
BsrGI TGTACA 1 cut(s) 835
BsrI ACTGG 1 cut(s) 82
BssAI RCCGGY 1 cut(s) 511
BssMI GATC 4 cut(s) 168, 772, 915, 1053
BssNAI GTATAC 1 cut(s) 555
Bst1107I GTATAC 1 cut(s) 555
Bst4CI ACNGT 3 cut(s) 151, 191, 281
Bst6I CTCTTC 2 cut(s) 464, 485
BstAPI GCANNNNNTGC 1 cut(s) 824
BstAUI TGTACA 1 cut(s) 835
BstBAI YACGTR 1 cut(s) 371
BstC8I GCNNGC 6 cut(s) 208, 380, 546, 765, 825, 941
BstDEI CTNAG 2 cut(s) 523, 558
BstF5I GGATG 7 cut(s) 60, 301, 490, 646, 978, 1041, 1045
BstFNI CGCG 1 cut(s) 933
BstHHI GCGC 2 cut(s) 745, 763
BstKTI GATC 4 cut(s) 171, 775, 918, 1056
BstMAI GTCTC 2 cut(s) 234, 324
BstMBI GATC 4 cut(s) 168, 772, 915, 1053
BstMWI GCNNNNNNNGC 5 cut(s) 207, 452, 815, 824, 1001
BstNSI RCATGY 1 cut(s) 322
BstSCI CCNGG 1 cut(s) 429
BstUI CGCG 1 cut(s) 933
BstV1I GCAGC 4 cut(s) 57, 60, 839, 1004
BstX2I RGATCY 2 cut(s) 772, 1053
BstYI RGATCY 2 cut(s) 772, 1053
BstZ17I GTATAC 1 cut(s) 555
BsuRI GGCC 2 cut(s) 99, 201
BtsCI GGATG 7 cut(s) 60, 301, 490, 646, 978, 1041, 1045
BtsIMutI CAGTG 1 cut(s) 903
BveI ACCTGC 1 cut(s) 282
Cac8I GCNNGC 6 cut(s) 208, 380, 546, 765, 825, 941
CfoI GCGC 2 cut(s) 745, 763
Cfr10I RCCGGY 1 cut(s) 511
Cfr13I GGNCC 1 cut(s) 427
Csp6I GTAC 3 cut(s) 7, 271, 836
CviAII CATG 3 cut(s) 166, 203, 319
CviQI GTAC 3 cut(s) 7, 271, 836
DdeI CTNAG 2 cut(s) 523, 558
DpnI GATC 4 cut(s) 170, 774, 917, 1055
DpnII GATC 4 cut(s) 168, 772, 915, 1053
DrdI GACNNNNNNGTC 1 cut(s) 113
DseDI GACNNNNNNGTC 1 cut(s) 113
EaeI YGGCCR 1 cut(s) 199
Eam1104I CTCTTC 2 cut(s) 464, 485
EarI CTCTTC 2 cut(s) 464, 485
EciI GGCGGA 2 cut(s) 163, 782
Eco31I GGTCTC 1 cut(s) 324
Eco32I GATATC 1 cut(s) 1011
Eco47I GGWCC 1 cut(s) 427
EcoO109I RGGNCCY 1 cut(s) 427
EcoRI GAATTC 1 cut(s) 535
EcoRV GATATC 1 cut(s) 1011
FaeI CATG 3 cut(s) 169, 206, 322
FaqI GGGAC 1 cut(s) 440
FatI CATG 3 cut(s) 165, 202, 318
FauI CCCGC 2 cut(s) 417, 541
FbaI TGATCA 1 cut(s) 915
FblI GTMKAC 2 cut(s) 193, 554
Fnu4HI GCNGC 4 cut(s) 46, 49, 828, 993
FokI GGATG 7 cut(s) 47, 308, 497, 653, 985, 1048, 1052
Fsp4HI GCNGC 4 cut(s) 46, 49, 828, 993
FspBI CTAG 1 cut(s) 545
FspI TGCGCA 2 cut(s) 744, 762
GlaI GCGC 2 cut(s) 744, 762
GluI GCNGC 4 cut(s) 46, 49, 828, 993
HaeIII GGCC 2 cut(s) 99, 201
HapII CCGG 7 cut(s) 416, 431, 512, 605, 698, 884, 970
HhaI GCGC 2 cut(s) 745, 763
Hin1II CATG 3 cut(s) 169, 206, 322
Hin6I GCGC 2 cut(s) 743, 761
HinP1I GCGC 2 cut(s) 743, 761
HindIII AAGCTT 1 cut(s) 941
HinfI GANTC 5 cut(s) 102, 136, 195, 694, 893
HpaII CCGG 7 cut(s) 416, 431, 512, 605, 698, 884, 970
HphI GGTGA 5 cut(s) 47, 526, 595, 671, 733
Hpy166II GTNNAC 4 cut(s) 194, 316, 555, 906
Hpy188I TCNGA 2 cut(s) 1053, 1065
Hpy188III TCNNGA 4 cut(s) 73, 416, 698, 1014
Hpy8I GTNNAC 4 cut(s) 194, 316, 555, 906
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 1 cut(s) 1026
HpyCH4III ACNGT 3 cut(s) 151, 191, 281
HpyCH4IV ACGT 1 cut(s) 370
HpyCH4V TGCA 8 cut(s) 4, 206, 266, 277, 455, 818, 827, 992
HpyF10VI GCNNNNNNNGC 5 cut(s) 207, 452, 815, 824, 1001
HpyF3I CTNAG 2 cut(s) 523, 558
HpySE526I ACGT 1 cut(s) 370
Hsp92II CATG 3 cut(s) 169, 206, 322
HspAI GCGC 2 cut(s) 743, 761
KflI GGGWCCC 1 cut(s) 427
Kpn2I TCCGGA 2 cut(s) 415, 697
KpnI GGTACC 1 cut(s) 274
Ksp22I TGATCA 1 cut(s) 915
Kzo9I GATC 4 cut(s) 168, 772, 915, 1053
LmnI GCTCC 1 cut(s) 700
Lsp1109I GCAGC 4 cut(s) 57, 60, 839, 1004
LweI GCATC 7 cut(s) 286, 475, 531, 591, 624, 777, 963
MaeI CTAG 1 cut(s) 545
MaeII ACGT 1 cut(s) 370
MaeIII GTNAC 3 cut(s) 151, 371, 721
MalI GATC 4 cut(s) 170, 774, 917, 1055
MboI GATC 4 cut(s) 168, 772, 915, 1053
MboII GAAGA 8 cut(s) 478, 481, 502, 529, 703, 766, 796, 1048
MfeI CAATTG 1 cut(s) 30
MflI RGATCY 2 cut(s) 772, 1053
MluCI AATT 4 cut(s) 30, 535, 628, 849
MlyI GAGTC 2 cut(s) 130, 189
MmeI TCCRAC 2 cut(s) 419, 645
MnlI CCTC 7 cut(s) 286, 465, 468, 475, 589, 603, 763
MroI TCCGGA 2 cut(s) 415, 697
MspA1I CMGCKG 1 cut(s) 400
MspI CCGG 7 cut(s) 416, 431, 512, 605, 698, 884, 970
MspR9I CCNGG 1 cut(s) 431
MunI CAATTG 1 cut(s) 30
Mva1269I GAATGC 2 cut(s) 448, 820
MvnI CGCG 1 cut(s) 933
MwoI GCNNNNNNNGC 5 cut(s) 207, 452, 815, 824, 1001
NciI CCSGG 1 cut(s) 431
NdeII GATC 4 cut(s) 168, 772, 915, 1053
NheI GCTAGC 1 cut(s) 544
NlaIII CATG 3 cut(s) 169, 206, 322
NlaIV GGNNCC 4 cut(s) 272, 428, 429, 702
NmeAIII GCCGAG 2 cut(s) 177, 816
NmuCI GTSAC 2 cut(s) 151, 721
NsbI TGCGCA 2 cut(s) 744, 762
NspI RCATGY 1 cut(s) 322
PctI GAATGC 2 cut(s) 448, 820
PfeI GAWTC 3 cut(s) 102, 694, 893
PkrI GCNGC 4 cut(s) 47, 50, 829, 994
PleI GAGTC 2 cut(s) 130, 189
PpsI GAGTC 2 cut(s) 130, 189
Ppu21I YACGTR 1 cut(s) 371
PpuMI RGGWCCY 1 cut(s) 427
Psp5II RGGWCCY 1 cut(s) 427
PspN4I GGNNCC 4 cut(s) 272, 428, 429, 702
PspPI GGNCC 1 cut(s) 427
PspPPI RGGWCCY 1 cut(s) 427
PsuI RGATCY 2 cut(s) 772, 1053
PvuII CAGCTG 1 cut(s) 400
RsaI GTAC 3 cut(s) 8, 272, 837
RsaNI GTAC 3 cut(s) 7, 271, 836
SatI GCNGC 4 cut(s) 46, 49, 828, 993
Sau3AI GATC 4 cut(s) 168, 772, 915, 1053
Sau96I GGNCC 1 cut(s) 427
SchI GAGTC 2 cut(s) 130, 189
ScrFI CCNGG 1 cut(s) 431
SetI ASST 9 cut(s) 216, 276, 336, 373, 384, 402, 479, 657, 945
SfaNI GCATC 7 cut(s) 286, 475, 531, 591, 624, 777, 963
SinI GGWCC 1 cut(s) 427
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 4 cut(s) 30, 535, 628, 849
SsiI CCGC 5 cut(s) 174, 424, 548, 767, 844
SspI AATATT 1 cut(s) 870
SspMI CTAG 1 cut(s) 545
StyD4I CCNGG 1 cut(s) 429
TaaI ACNGT 3 cut(s) 151, 191, 281
TaiI ACGT 1 cut(s) 373
TaqI TCGA 3 cut(s) 105, 219, 539
TasI AATT 4 cut(s) 30, 535, 628, 849
TatI WGTACW 2 cut(s) 6, 835
TfiI GAWTC 3 cut(s) 102, 694, 893
TscAI CASTG 1 cut(s) 903
TseFI GTSAC 2 cut(s) 151, 721
TseI GCWGC 4 cut(s) 45, 48, 827, 992
Tsp45I GTSAC 2 cut(s) 151, 721
TspDTI ATGAA 3 cut(s) 49, 519, 1056
TspRI CASTG 1 cut(s) 903
VpaK11BI GGWCC 1 cut(s) 427
XapI RAATTY 2 cut(s) 535, 628
XceI RCATGY 1 cut(s) 322
XmiI GTMKAC 2 cut(s) 193, 554
XspI CTAG 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.