RLG00000009646

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0024708
Physical Location & Seq
Forward (+)
55848492 .. 55849433
942 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009646

Sequence Viewer

Length: 774 bp
ATGACGACCAGAGCAATTGGTGAAAAGGGCAGCCAAGTATTCATCCAAAATCTCAAGATTACCCAGTTGGGGAAGTCGAGCAGAATCGACGAAGCATTCAAAGTTTTCTCACAAATGACTCAAAGGAACACCGTCACATACAACTCCATGATCTCTGCCTATGCCAAGAACGGTAGACTCGGCCATGCACGCAAGGTGTTTGATAATATGTCTCACAGAAACTTGGTTTCTTGGAACACTATGATTGTAGGGTACCTGCACAGTAATTTGGTGGAGGATGCTTATGGGCTTTTTGTTACCATGCCACAAAGAGACCTTTTCTCTTGGACTTTGATGATTACTTGCTACACATGTAATGGCGAGCTTGACAGAGCCAGACAGCTGTTCAGTTTGCTTCCGGATAAACGGGACCCGGCTTGTTGGAATGCCATGATTGCAGGGTATGTGAAGAAGGGGAGGTTTGAGGATGCGAAGAGAATGTTTGATGAAATGCCGTTTTTTGAGAAGATTCCAGAGGCTAATGTTGTTTCGTGGGTGACAATGTTGTGTGGGTTTGCGCAAAATGGGAAGATTGCGCAGGCAGAGGATCTGTTTGAGAAGATGCCGAGTAGAAATGTGGTTGCTTGGAATGCAATGCTTGCAGCCTATGTACAAGATCGCCGAATTGACAAGGCTGCTGAAATATTCAAGGATATACCGGAGATGGATTCAGTGTCATGGACTACAATGATCAATGGGTATGTTCGCGTTGGCAAGCTTGACGAAGTAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

258

Amino Acids

29.48

Weight (kDa)

8.97

Isoelectric Point (pI)

27.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 42 - 75 6e-09 PPR repeat family
PPR_1 PF12854 42 - 71 1.2e-08 PPR repeat
PPR PF01535 45 - 74 9.5e-09 PPR repeat
PPR_2 PF13041 139 - 164 5.4e-07 PPR repeat family
PPR PF01535 140 - 164 4e-08 PPR repeat
PPR_2 PF13041 174 - 206 3e-06 PPR repeat family
PPR PF01535 176 - 206 3.8e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024708)

Species Orthologous Gene IDs
pyrus_communis pycom17g11980
rosa_laevigata RLG00000009646
rosa_multiflora Rmu_co8393283.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 558, 576
Acc36I ACCTGC 1 cut(s) 264
Acc65I GGTACC 1 cut(s) 252
AccB1I GGYRCC 1 cut(s) 252
AccI GTMKAC 1 cut(s) 175
AccII CGCG 1 cut(s) 747
AccIII TCCGGA 1 cut(s) 397
AclWI GGATC 1 cut(s) 594
AcoI YGGCCR 1 cut(s) 181
AfaI GTAC 2 cut(s) 254, 651
AfiI CCNNNNNNNGG 1 cut(s) 69
AflIII ACRYGT 1 cut(s) 350
AgsI TTSAA 2 cut(s) 100, 688
AluBI AGCT 3 cut(s) 364, 382, 757
AluI AGCT 3 cut(s) 364, 382, 757
Alw26I GTCTC 2 cut(s) 216, 306
AlwI GGATC 1 cut(s) 594
Aor13HI TCCGGA 1 cut(s) 397
AoxI GGCC 1 cut(s) 181
ApeKI GCWGC 3 cut(s) 30, 641, 674
Asp718I GGTACC 1 cut(s) 252
AspLEI GCGC 2 cut(s) 559, 577
AspS9I GGNCC 1 cut(s) 409
AsuC2I CCSGG 1 cut(s) 413
AsuHPI GGTGA 2 cut(s) 32, 547
AvaII GGWCC 1 cut(s) 409
BanI GGYRCC 1 cut(s) 252
BbvI GCAGC 3 cut(s) 42, 653, 661
BccI CCATC 1 cut(s) 697
BceAI ACGGC 1 cut(s) 478
BclI TGATCA 1 cut(s) 729
BcnI CCSGG 1 cut(s) 413
BcoDI GTCTC 2 cut(s) 216, 306
BfuAI ACCTGC 1 cut(s) 264
BisI GCNGC 3 cut(s) 31, 642, 675
BlsI GCNGC 3 cut(s) 32, 643, 676
Bme1390I CCNGG 1 cut(s) 413
Bme18I GGWCC 1 cut(s) 409
BmgT120I GGNCC 1 cut(s) 409
BmiI GGNNCC 3 cut(s) 254, 410, 411
BmrFI CCNGG 1 cut(s) 413
BmrI ACTGGG 1 cut(s) 58
BmsI GCATC 3 cut(s) 268, 457, 591
BmuI ACTGGG 1 cut(s) 58
BpuEI CTTGAG 1 cut(s) 38
BpuMI CCSGG 1 cut(s) 413
BsaI GGTCTC 1 cut(s) 306
BsaWI WCCGGW 2 cut(s) 397, 697
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse1I ACTGG 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 639
BseAI TCCGGA 1 cut(s) 397
BseGI GGATG 3 cut(s) 42, 283, 472
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMI GCAATG 1 cut(s) 639
BseNI ACTGG 1 cut(s) 64
BseXI GCAGC 3 cut(s) 42, 653, 661
BsgI GTGCAG 1 cut(s) 242
Bsh1236I CGCG 1 cut(s) 747
BshFI GGCC 1 cut(s) 183
BshNI GGYRCC 1 cut(s) 252
BsiSI CCGG 3 cut(s) 398, 413, 698
BslFI GGGAC 1 cut(s) 422
BslI CCNNNNNNNGG 1 cut(s) 69
BsmAI GTCTC 2 cut(s) 216, 306
BsmFI GGGAC 1 cut(s) 422
BsmI GAATGC 3 cut(s) 95, 430, 634
BsnI GGCC 1 cut(s) 183
Bso31I GGTCTC 1 cut(s) 306
Bsp13I TCCGGA 1 cut(s) 397
Bsp1407I TGTACA 1 cut(s) 649
Bsp143I GATC 4 cut(s) 150, 586, 655, 729
BspANI GGCC 1 cut(s) 183
BspEI TCCGGA 1 cut(s) 397
BspFNI CGCG 1 cut(s) 747
BspLI GGNNCC 3 cut(s) 254, 410, 411
BspMI ACCTGC 1 cut(s) 264
BspPI GGATC 1 cut(s) 594
BspT107I GGYRCC 1 cut(s) 252
BspTNI GGTCTC 1 cut(s) 306
BsrDI GCAATG 1 cut(s) 639
BsrGI TGTACA 1 cut(s) 649
BsrI ACTGG 1 cut(s) 64
BssMI GATC 4 cut(s) 150, 586, 655, 729
Bst4CI ACNGT 3 cut(s) 133, 173, 263
Bst6I CTCTTC 1 cut(s) 467
BstAPI GCANNNNNTGC 1 cut(s) 638
BstAUI TGTACA 1 cut(s) 649
BstC8I GCNNGC 5 cut(s) 190, 362, 579, 639, 755
BstF5I GGATG 3 cut(s) 42, 283, 472
BstFNI CGCG 1 cut(s) 747
BstHHI GCGC 2 cut(s) 559, 577
BstKTI GATC 4 cut(s) 153, 589, 658, 732
BstMAI GTCTC 2 cut(s) 216, 306
BstMBI GATC 4 cut(s) 150, 586, 655, 729
BstMWI GCNNNNNNNGC 4 cut(s) 189, 434, 629, 638
BstNSI RCATGY 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 411
BstUI CGCG 1 cut(s) 747
BstV1I GCAGC 3 cut(s) 42, 653, 661
BstX2I RGATCY 1 cut(s) 586
BstYI RGATCY 1 cut(s) 586
BsuRI GGCC 1 cut(s) 183
BtsCI GGATG 3 cut(s) 42, 283, 472
BtsIMutI CAGTG 1 cut(s) 717
BveI ACCTGC 1 cut(s) 264
Cac8I GCNNGC 5 cut(s) 190, 362, 579, 639, 755
CfoI GCGC 2 cut(s) 559, 577
Cfr13I GGNCC 1 cut(s) 409
Csp6I GTAC 2 cut(s) 253, 650
CviAII CATG 6 cut(s) 148, 185, 301, 351, 430, 717
CviQI GTAC 2 cut(s) 253, 650
DpnI GATC 4 cut(s) 152, 588, 657, 731
DpnII GATC 4 cut(s) 150, 586, 655, 729
EaeI YGGCCR 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 467
EarI CTCTTC 1 cut(s) 467
Eco31I GGTCTC 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 409
EcoO109I RGGNCCY 1 cut(s) 409
FaeI CATG 6 cut(s) 151, 188, 304, 354, 433, 720
FaqI GGGAC 1 cut(s) 422
FatI CATG 6 cut(s) 147, 184, 300, 350, 429, 716
FbaI TGATCA 1 cut(s) 729
FblI GTMKAC 1 cut(s) 175
Fnu4HI GCNGC 3 cut(s) 31, 642, 675
FokI GGATG 3 cut(s) 29, 290, 479
Fsp4HI GCNGC 3 cut(s) 31, 642, 675
FspI TGCGCA 2 cut(s) 558, 576
GlaI GCGC 2 cut(s) 558, 576
GluI GCNGC 3 cut(s) 31, 642, 675
HaeIII GGCC 1 cut(s) 183
HapII CCGG 3 cut(s) 398, 413, 698
HhaI GCGC 2 cut(s) 559, 577
Hin1II CATG 6 cut(s) 151, 188, 304, 354, 433, 720
Hin6I GCGC 2 cut(s) 557, 575
HinP1I GCGC 2 cut(s) 557, 575
HindIII AAGCTT 1 cut(s) 755
HinfI GANTC 5 cut(s) 84, 118, 177, 508, 707
HpaII CCGG 3 cut(s) 398, 413, 698
HphI GGTGA 2 cut(s) 32, 547
Hpy166II GTNNAC 1 cut(s) 176
Hpy188III TCNNGA 3 cut(s) 55, 398, 512
Hpy8I GTNNAC 1 cut(s) 176
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 445
HpyCH4III ACNGT 3 cut(s) 133, 173, 263
HpyCH4V TGCA 5 cut(s) 188, 259, 437, 632, 641
HpyF10VI GCNNNNNNNGC 4 cut(s) 189, 434, 629, 638
Hsp92II CATG 6 cut(s) 151, 188, 304, 354, 433, 720
HspAI GCGC 2 cut(s) 557, 575
KflI GGGWCCC 1 cut(s) 409
Kpn2I TCCGGA 1 cut(s) 397
KpnI GGTACC 1 cut(s) 256
Ksp22I TGATCA 1 cut(s) 729
Kzo9I GATC 4 cut(s) 150, 586, 655, 729
Lsp1109I GCAGC 3 cut(s) 42, 653, 661
LweI GCATC 3 cut(s) 268, 457, 591
MaeIII GTNAC 3 cut(s) 133, 295, 535
MalI GATC 4 cut(s) 152, 588, 657, 731
MboI GATC 4 cut(s) 150, 586, 655, 729
MboII GAAGA 5 cut(s) 460, 484, 517, 580, 610
MfeI CAATTG 1 cut(s) 15
MflI RGATCY 1 cut(s) 586
MluCI AATT 3 cut(s) 15, 265, 663
MlyI GAGTC 2 cut(s) 112, 171
MmeI TCCRAC 1 cut(s) 401
MnlI CCTC 5 cut(s) 268, 450, 457, 508, 577
MroI TCCGGA 1 cut(s) 397
MspA1I CMGCKG 1 cut(s) 382
MspI CCGG 3 cut(s) 398, 413, 698
MspR9I CCNGG 1 cut(s) 413
MunI CAATTG 1 cut(s) 15
Mva1269I GAATGC 3 cut(s) 95, 430, 634
MvnI CGCG 1 cut(s) 747
MwoI GCNNNNNNNGC 4 cut(s) 189, 434, 629, 638
NciI CCSGG 1 cut(s) 413
NdeII GATC 4 cut(s) 150, 586, 655, 729
NlaIII CATG 6 cut(s) 151, 188, 304, 354, 433, 720
NlaIV GGNNCC 3 cut(s) 254, 410, 411
NmeAIII GCCGAG 2 cut(s) 159, 630
NmuCI GTSAC 2 cut(s) 133, 535
NsbI TGCGCA 2 cut(s) 558, 576
NspI RCATGY 1 cut(s) 354
PciI ACATGT 1 cut(s) 350
PctI GAATGC 3 cut(s) 95, 430, 634
PfeI GAWTC 3 cut(s) 84, 508, 707
PkrI GCNGC 3 cut(s) 32, 643, 676
PleI GAGTC 2 cut(s) 112, 171
PpsI GAGTC 2 cut(s) 112, 171
PpuMI RGGWCCY 1 cut(s) 409
PscI ACATGT 1 cut(s) 350
Psp5II RGGWCCY 1 cut(s) 409
PspN4I GGNNCC 3 cut(s) 254, 410, 411
PspPI GGNCC 1 cut(s) 409
PspPPI RGGWCCY 1 cut(s) 409
PsuI RGATCY 1 cut(s) 586
PvuII CAGCTG 1 cut(s) 382
RsaI GTAC 2 cut(s) 254, 651
RsaNI GTAC 2 cut(s) 253, 650
SatI GCNGC 3 cut(s) 31, 642, 675
Sau3AI GATC 4 cut(s) 150, 586, 655, 729
Sau96I GGNCC 1 cut(s) 409
SchI GAGTC 2 cut(s) 112, 171
ScrFI CCNGG 1 cut(s) 413
SetI ASST 8 cut(s) 198, 258, 318, 366, 384, 461, 759, 773
SfaNI GCATC 3 cut(s) 268, 457, 591
SinI GGWCC 1 cut(s) 409
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 3 cut(s) 15, 265, 663
SspI AATATT 1 cut(s) 684
StyD4I CCNGG 1 cut(s) 411
TaaI ACNGT 3 cut(s) 133, 173, 263
TaqI TCGA 2 cut(s) 77, 87
TasI AATT 3 cut(s) 15, 265, 663
TatI WGTACW 1 cut(s) 649
TfiI GAWTC 3 cut(s) 84, 508, 707
TscAI CASTG 1 cut(s) 717
TseFI GTSAC 2 cut(s) 133, 535
TseI GCWGC 3 cut(s) 30, 641, 674
Tsp45I GTSAC 2 cut(s) 133, 535
TspDTI ATGAA 2 cut(s) 31, 501
TspRI CASTG 1 cut(s) 717
VpaK11BI GGWCC 1 cut(s) 409
XceI RCATGY 1 cut(s) 354
XmiI GTMKAC 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.