Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0024606

Physical Location & Seq

Genomic Coordinates Forward (+)

10150421 .. 10150750

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGGTATCCTAGTTTTTTGGACATGGTTTCCTCTCCTCGTTTCGTGTTTGCCCGGTGAGAGGGTTATGTTTGTGCTAGCAGCATTTGCATTAACATCGCTCAAGCACATCCAGTTCACATCGAGTCATTTCTCCGGCAACACCTATCGAACATCATTTGTTTCCGCGAATGCCTCATGGACAACTGAGGAAGATTGCTCCAATTGTGAATACTCATGTCTGATACCTCTTAGAGAGCATGTCTACATAGATTTACTGCGGCACCACCCCACCACACACGTTGATTCGTTTACATTTCGCAATTTTTTTTTACAAGTTTGGGGCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0012505 GO:0016491 GO:0016705 GO:0030148 GO:0033554 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046467 GO:0050896 GO:0051716 GO:0052631 GO:0055114 GO:0070417 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5 FA_desaturase

Protein Analysis

110

Amino Acids

12.64

Weight (kDa)

6.26

Isoelectric Point (pI)

30.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024606)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g03360 pycom05g07610 pycom17g12390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	261
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	1 cut(s)	167
AciI	CCGC	2 cut(s)	165, 259
AfiI	CCNNNNNNNGG	1 cut(s)	60
AflIII	ACRYGT	1 cut(s)	277
ApeKI	GCWGC	1 cut(s)	80
AsuC2I	CCSGG	1 cut(s)	54
AsuHPI	GGTGA	1 cut(s)	68
AsuNHI	GCTAGC	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	92
BcgI	CGANNNNNNTGC	2 cut(s)	78, 112
BciVI	GTATCC	1 cut(s)	17
BcnI	CCSGG	1 cut(s)	54
BfaI	CTAG	2 cut(s)	11, 77
BfuI	GTATCC	1 cut(s)	17
BisI	GCNGC	2 cut(s)	81, 260
BlsI	GCNGC	2 cut(s)	82, 261
Bme1390I	CCNGG	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	263
BmrFI	CCNGG	1 cut(s)	54
BmtI	GCTAGC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	86
BpuMI	CCSGG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse1I	ACTGG	1 cut(s)	112
BseGI	GGATG	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	112
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	92
Bsh1236I	CGCG	1 cut(s)	167
BshNI	GGYRCC	1 cut(s)	261
BsiSI	CCGG	2 cut(s)	54, 135
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmI	GAATGC	1 cut(s)	175
BspACI	CCGC	2 cut(s)	165, 259
BspCNI	CTCAG	1 cut(s)	178
BspFNI	CGCG	1 cut(s)	167
BspLI	GGNNCC	1 cut(s)	263
BspOI	GCTAGC	1 cut(s)	80
BspT107I	GGYRCC	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	2 cut(s)	186, 230
BstF5I	GGATG	1 cut(s)	108
BstFNI	CGCG	1 cut(s)	167
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNSI	RCATGY	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	52
BstUI	CGCG	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	92
BsuI	GTATCC	1 cut(s)	17
BtgZI	GCGATG	1 cut(s)	81
BtsCI	GGATG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	78
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviAII	CATG	4 cut(s)	24, 177, 216, 239
DdeI	CTNAG	2 cut(s)	186, 230
FaeI	CATG	4 cut(s)	27, 180, 219, 242
FaiI	YATR	6 cut(s)	25, 68, 178, 217, 240, 248
FatI	CATG	4 cut(s)	23, 176, 215, 238
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	2 cut(s)	81, 260
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	2 cut(s)	81, 260
FspBI	CTAG	2 cut(s)	11, 77
GluI	GCNGC	2 cut(s)	81, 260
HapII	CCGG	2 cut(s)	54, 135
Hin1II	CATG	4 cut(s)	27, 180, 219, 242
HinfI	GANTC	2 cut(s)	124, 284
HpaII	CCGG	2 cut(s)	54, 135
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	3 cut(s)	117, 244, 291
Hpy188I	TCNGA	1 cut(s)	222
Hpy8I	GTNNAC	3 cut(s)	117, 244, 291
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	1 cut(s)	89
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	2 cut(s)	186, 230
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	4 cut(s)	27, 180, 219, 242
LmnI	GCTCC	1 cut(s)	203
LpnPI	CCDG	3 cut(s)	67, 125, 148
Lsp1109I	GCAGC	1 cut(s)	92
MaeI	CTAG	2 cut(s)	11, 77
MaeII	ACGT	1 cut(s)	279
MboII	GAAGA	1 cut(s)	203
MfeI	CAATTG	1 cut(s)	202
MluCI	AATT	2 cut(s)	202, 301
MlyI	GAGTC	1 cut(s)	133
MnlI	CCTC	6 cut(s)	42, 47, 54, 181, 184, 237
MseI	TTAA	1 cut(s)	92
MspI	CCGG	2 cut(s)	54, 135
MspR9I	CCNGG	1 cut(s)	54
MunI	CAATTG	1 cut(s)	202
Mva1269I	GAATGC	1 cut(s)	175
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	86
NciI	CCSGG	1 cut(s)	54
NheI	GCTAGC	1 cut(s)	76
NlaIII	CATG	4 cut(s)	27, 180, 219, 242
NlaIV	GGNNCC	1 cut(s)	263
NspI	RCATGY	1 cut(s)	242
PctI	GAATGC	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	284
PkrI	GCNGC	2 cut(s)	82, 261
PleI	GAGTC	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	263
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	2 cut(s)	81, 260
SchI	GAGTC	1 cut(s)	133
ScrFI	CCNGG	1 cut(s)	54
SetI	ASST	3 cut(s)	146, 229, 282
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	2 cut(s)	202, 301
SsiI	CCGC	2 cut(s)	165, 259
SspMI	CTAG	2 cut(s)	11, 77
StyD4I	CCNGG	1 cut(s)	52
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	2 cut(s)	122, 148
TasI	AATT	2 cut(s)	202, 301
TauI	GCSGC	1 cut(s)	262
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TseI	GCWGC	1 cut(s)	80
XceI	RCATGY	1 cut(s)	242
XmiI	GTMKAC	1 cut(s)	243
XspI	CTAG	2 cut(s)	11, 77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.