pycom17g13310

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
10979148 .. 10980067
920 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g13310.3

Sequence Viewer

Length: 573 bp
ATGTGTTCTTGCAAGCTCCCAGTGAATATGGTGCTTTTTCTTTCTTTGTTCACAACTTCTCTGATGGTCATGGCTGCCTCAGCTGGTAATTTCTACCAAGACTTTGACGTTACATTTGGGGATGGACGTGCCAAGATGCTCAACGGAGGACAGCTTCTCACGCTCAACCTTGACCAGGCATCTGGGTCTGGTTTCAAGTCCAAAAATGAGTATTTATTTGGAAGGATTGATATGCAGATCAAGTTGGTCACTGGGAACTCGGCTGGAACCGTCACTGCCTACTATATATGTCCAACTCATGATGAAATCGACTTTGAGTTTTTGGGGAATGTATCTGGAGATCCCTACACTCTCCATACCAATGTGTTCAGCCAAGGAAAAGGGAACAGAGAACAGCAGTTCCAACTTTGGTTTGATCCCACAAATGCCTTCCACACTTACTCCATTGTATGGAACTCCCAACGCATTATATTCTTGGTGGACAACATTCCAATCAGAGTGTTCAACAACCTGGAATCAGTTGGAGTTCCATTCCCTAAAAACCAGCCCATGCGGATTTACTCAAGCCTGTGA

Protein Analysis

191

Amino Acids

21.33

Weight (kDa)

5.85

Isoelectric Point (pI)

22.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0029488)

Species Orthologous Gene IDs
pyrus_communis pycom17g13310
rosa_multiflora Rmu_co8296425.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 450
AciI CCGC 1 cut(s) 553
AclWI GGATC 2 cut(s) 335, 410
AfiI CCNNNNNNNGG 2 cut(s) 175, 450
AgsI TTSAA 2 cut(s) 196, 505
AjiI CACGTC 1 cut(s) 128
AjnI CCWGG 2 cut(s) 174, 510
AloI GAACNNNNNNTCC 2 cut(s) 384, 416
AluBI AGCT 3 cut(s) 16, 83, 154
AluI AGCT 3 cut(s) 16, 83, 154
AlwI GGATC 2 cut(s) 335, 410
ApeKI GCWGC 1 cut(s) 74
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
BbvCI CCTCAGC 1 cut(s) 79
BbvI GCAGC 1 cut(s) 61
BccI CCATC 2 cut(s) 58, 116
BciT130I CCWGG 2 cut(s) 176, 512
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 2 cut(s) 176, 512
BmgBI CACGTC 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 2 cut(s) 176, 512
BmrI ACTGGG 2 cut(s) 14, 261
BmsI GCATC 2 cut(s) 126, 188
BmuI ACTGGG 2 cut(s) 14, 261
BpmI CTGGAG 1 cut(s) 357
Bpu10I CCTNAGC 1 cut(s) 79
BpuEI CTTGAG 1 cut(s) 547
BsaJI CCNNGG 1 cut(s) 373
BsaXI ACNNNNNCTCC 2 cut(s) 425, 455
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 450
Bse1I ACTGG 2 cut(s) 20, 256
BseBI CCWGG 2 cut(s) 176, 512
BseDI CCNNGG 1 cut(s) 373
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 2 cut(s) 175, 450
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 2 cut(s) 20, 256
BseXI GCAGC 1 cut(s) 61
BslI CCNNNNNNNGG 2 cut(s) 175, 450
Bsp143I GATC 3 cut(s) 237, 340, 415
BspACI CCGC 1 cut(s) 553
BspCNI CTCAG 1 cut(s) 92
BspHI TCATGA 1 cut(s) 298
BspLI GGNNCC 1 cut(s) 268
BspPI GGATC 2 cut(s) 335, 410
BsrI ACTGG 2 cut(s) 20, 256
BssECI CCNNGG 1 cut(s) 373
BssMI GATC 3 cut(s) 237, 340, 415
BssT1I CCWWGG 1 cut(s) 373
Bst2UI CCWGG 2 cut(s) 176, 512
Bst4CI ACNGT 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 79
BstENI CCTNNNNNAGG 1 cut(s) 173
BstF5I GGATG 1 cut(s) 127
BstKTI GATC 3 cut(s) 240, 343, 418
BstMBI GATC 3 cut(s) 237, 340, 415
BstMWI GCNNNNNNNGC 2 cut(s) 80, 160
BstNI CCWGG 2 cut(s) 176, 512
BstSCI CCNGG 2 cut(s) 174, 510
BstV1I GCAGC 1 cut(s) 61
BstX2I RGATCY 1 cut(s) 340
BstXI CCANNNNNNTGG 1 cut(s) 182
BstYI RGATCY 1 cut(s) 340
BtrI CACGTC 1 cut(s) 128
BtsCI GGATG 1 cut(s) 127
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 3 cut(s) 27, 249, 273
Cac8I GCNNGC 1 cut(s) 14
CciI TCATGA 1 cut(s) 298
CviAII CATG 3 cut(s) 70, 299, 550
CviJI RGCY 8 cut(s) 16, 74, 83, 154, 263, 372, 547, 567
CviKI_1 RGCY 8 cut(s) 16, 74, 83, 154, 263, 372, 547, 567
DdeI CTNAG 1 cut(s) 79
DpnI GATC 3 cut(s) 239, 342, 417
DpnII GATC 3 cut(s) 237, 340, 415
Eco130I CCWWGG 1 cut(s) 373
EcoNI CCTNNNNNAGG 1 cut(s) 173
EcoRII CCWGG 2 cut(s) 174, 510
EcoT14I CCWWGG 1 cut(s) 373
ErhI CCWWGG 1 cut(s) 373
FaeI CATG 3 cut(s) 73, 302, 553
FatI CATG 3 cut(s) 69, 298, 549
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 357
Hin1II CATG 3 cut(s) 73, 302, 553
HinfI GANTC 1 cut(s) 515
Hpy166II GTNNAC 2 cut(s) 51, 481
Hpy188I TCNGA 2 cut(s) 63, 497
Hpy188III TCNNGA 2 cut(s) 299, 336
Hpy8I GTNNAC 2 cut(s) 51, 481
HpyAV CCTTC 2 cut(s) 216, 439
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4IV ACGT 2 cut(s) 108, 127
HpyCH4V TGCA 2 cut(s) 12, 235
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 160
HpyF3I CTNAG 1 cut(s) 79
HpySE526I ACGT 2 cut(s) 108, 127
Hsp92II CATG 3 cut(s) 73, 302, 553
Kzo9I GATC 3 cut(s) 237, 340, 415
LmnI GCTCC 1 cut(s) 21
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 2 cut(s) 126, 188
MaeII ACGT 2 cut(s) 108, 127
MaeIII GTNAC 3 cut(s) 109, 247, 271
MalI GATC 3 cut(s) 239, 342, 417
MboI GATC 3 cut(s) 237, 340, 415
MflI RGATCY 1 cut(s) 340
MluCI AATT 1 cut(s) 88
MmeI TCCRAC 3 cut(s) 317, 427, 502
MnlI CCTC 2 cut(s) 88, 140
MslI CAYNNNNRTG 1 cut(s) 360
MspA1I CMGCKG 1 cut(s) 83
MspR9I CCNGG 2 cut(s) 176, 512
MvaI CCWGG 2 cut(s) 176, 512
MwoI GCNNNNNNNGC 2 cut(s) 80, 160
NdeII GATC 3 cut(s) 237, 340, 415
NlaIII CATG 3 cut(s) 73, 302, 553
NlaIV GGNNCC 1 cut(s) 268
NmeAIII GCCGAG 1 cut(s) 239
NmuCI GTSAC 2 cut(s) 247, 271
PagI TCATGA 1 cut(s) 298
PfeI GAWTC 1 cut(s) 515
PflMI CCANNNNNTGG 1 cut(s) 450
PkrI GCNGC 1 cut(s) 76
Psp6I CCWGG 2 cut(s) 174, 510
PspGI CCWGG 2 cut(s) 174, 510
PspN4I GGNNCC 1 cut(s) 268
PsuI RGATCY 1 cut(s) 340
PvuII CAGCTG 1 cut(s) 83
RseI CAYNNNNRTG 1 cut(s) 360
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 3 cut(s) 237, 340, 415
ScrFI CCNGG 2 cut(s) 176, 512
SetI ASST 7 cut(s) 18, 85, 111, 130, 156, 171, 513
SfaNI GCATC 2 cut(s) 126, 188
SmiMI CAYNNNNRTG 1 cut(s) 360
SmlI CTYRAG 1 cut(s) 562
SmoI CTYRAG 1 cut(s) 562
Sse9I AATT 1 cut(s) 88
SsiI CCGC 1 cut(s) 553
StyD4I CCNGG 2 cut(s) 174, 510
StyI CCWWGG 1 cut(s) 373
TaaI ACNGT 1 cut(s) 271
TaiI ACGT 2 cut(s) 111, 130
TaqI TCGA 1 cut(s) 309
TasI AATT 1 cut(s) 88
TfiI GAWTC 1 cut(s) 515
TscAI CASTG 3 cut(s) 27, 256, 280
TseFI GTSAC 2 cut(s) 247, 271
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 2 cut(s) 247, 271
TspDTI ATGAA 1 cut(s) 318
TspGWI ACGGA 1 cut(s) 159
TspRI CASTG 3 cut(s) 27, 256, 280
Van91I CCANNNNNTGG 1 cut(s) 450
XagI CCTNNNNNAGG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.