Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8296425.1

Orthogroup ID

OG0029488

Physical Location & Seq

Genomic Coordinates Forward (+)

100 .. 883

Gene Structure 784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8296425.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 548 bp

atgtcttcttctaaggtttccatggtgcttcttctttctttgttcatagcttctattctagccatgactgccttagctggcaatttctttcaagattttgacatcacttttggagatcaacgcgttaaaatactcgaaggaggaaagtttctcacgctcaacctcgaccagtattctggctctggtttcaaatccaagaacgagtacttattcggaaggatcgacatgcaaatcaaacttgtgcctggaaactcagctggcactgtcactacatactatttatcttctgaaggtccaactcatgatgaaatcgacttcgagtttttgggcaactcatctggagatccctacactctccacaccaatgtattcagtcagggaaaaggggacagagaacaacaattccatctttggtttgatcccacaaaggccttccacacctattcatttgtctggaactccaaacgcattatattctttgtcgacaacattccaatccgagtgttcaacaacttggaatcatttggtgttccattccccaaaaacca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009612 GO:0009628 GO:0009664 GO:0009719 GO:0009725 GO:0009733 GO:0009741 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046527 GO:0050896 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

182

Amino Acids

20.57

Weight (kDa)

5.76

Isoelectric Point (pI)

26.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029488)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g13310
rosa_multiflora	Rmu_co8296425.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	483
AccII	CGCG	1 cut(s)	123
AclWI	GGATC	3 cut(s)	227, 338, 413
AcuI	CTGAAG	1 cut(s)	309
AfaI	GTAC	1 cut(s)	206
AflIII	ACRYGT	1 cut(s)	121
AgsI	TTSAA	3 cut(s)	92, 190, 508
AjnI	CCWGG	1 cut(s)	244
AloI	GAACNNNNNNTCC	2 cut(s)	387, 419
AluBI	AGCT	3 cut(s)	50, 77, 257
AluI	AGCT	3 cut(s)	50, 77, 257
AlwI	GGATC	3 cut(s)	227, 338, 413
AoxI	GGCC	1 cut(s)	429
ArsI	GACNNNNNNTTYG	2 cut(s)	92, 124
AspS9I	GGNCC	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	293
BccI	CCATC	1 cut(s)	414
BciT130I	CCWGG	1 cut(s)	246
BfaI	CTAG	1 cut(s)	59
BmcAI	AGTACT	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	246
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	293
BmrFI	CCNGG	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	360
Bpu10I	CCTNAGC	1 cut(s)	73
BsaJI	CCNNGG	1 cut(s)	21
Bse1I	ACTGG	1 cut(s)	169
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	21
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	169
Bsh1236I	CGCG	1 cut(s)	123
BshFI	GGCC	1 cut(s)	431
BslFI	GGGAC	1 cut(s)	401
BsmFI	GGGAC	1 cut(s)	401
BsnI	GGCC	1 cut(s)	431
Bsp143I	GATC	4 cut(s)	115, 219, 343, 418
Bsp19I	CCATGG	1 cut(s)	21
BspANI	GGCC	1 cut(s)	431
BspCNI	CTCAG	1 cut(s)	266
BspFNI	CGCG	1 cut(s)	123
BspHI	TCATGA	1 cut(s)	301
BspPI	GGATC	3 cut(s)	227, 338, 413
BsrI	ACTGG	1 cut(s)	169
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	4 cut(s)	115, 219, 343, 418
BssT1I	CCWWGG	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	265
BstC8I	GCNNGC	2 cut(s)	79, 259
BstDEI	CTNAG	3 cut(s)	12, 73, 253
BstDSI	CCRYGG	1 cut(s)	21
BstFNI	CGCG	1 cut(s)	123
BstKTI	GATC	4 cut(s)	118, 222, 346, 421
BstMBI	GATC	4 cut(s)	115, 219, 343, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	1 cut(s)	246
BstNSI	RCATGY	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	244
BstUI	CGCG	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	343
BstXI	CCANNNNNNTGG	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	431
BtgI	CCRYGG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	2 cut(s)	79, 259
CciI	TCATGA	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	4 cut(s)	22, 64, 226, 302
CviJI	RGCY	6 cut(s)	50, 62, 77, 180, 257, 431
CviKI_1	RGCY	6 cut(s)	50, 62, 77, 180, 257, 431
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	3 cut(s)	12, 73, 253
DpnI	GATC	4 cut(s)	117, 221, 345, 420
DpnII	GATC	4 cut(s)	115, 219, 343, 418
Eco130I	CCWWGG	1 cut(s)	21
Eco147I	AGGCCT	1 cut(s)	431
Eco47I	GGWCC	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	4 cut(s)	25, 67, 229, 305
FaiI	YATR	7 cut(s)	23, 47, 65, 227, 274, 303, 473
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	4 cut(s)	21, 63, 225, 301
FblI	GTMKAC	1 cut(s)	483
FspBI	CTAG	1 cut(s)	59
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	431
Hin1II	CATG	4 cut(s)	25, 67, 229, 305
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	1 cut(s)	518
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	3 cut(s)	215, 289, 500
Hpy188III	TCNNGA	4 cut(s)	92, 302, 339, 454
Hpy8I	GTNNAC	1 cut(s)	484
HpyAV	CCTTC	4 cut(s)	131, 210, 284, 442
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4V	TGCA	1 cut(s)	229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	3 cut(s)	12, 73, 253
Hsp92II	CATG	4 cut(s)	25, 67, 229, 305
Kzo9I	GATC	4 cut(s)	115, 219, 343, 418
MaeI	CTAG	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	4 cut(s)	117, 221, 345, 420
MboI	GATC	4 cut(s)	115, 219, 343, 418
MboII	GAAGA	2 cut(s)	23, 276
MflI	RGATCY	1 cut(s)	343
MluCI	AATT	2 cut(s)	82, 401
MluI	ACGCGT	1 cut(s)	121
MmeI	TCCRAC	1 cut(s)	320
MnlI	CCTC	2 cut(s)	134, 173
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	1 cut(s)	363
MspA1I	CMGCKG	1 cut(s)	257
MspR9I	CCNGG	1 cut(s)	246
MvaI	CCWGG	1 cut(s)	246
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	68
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	4 cut(s)	115, 219, 343, 418
NlaIII	CATG	4 cut(s)	25, 67, 229, 305
NmuCI	GTSAC	1 cut(s)	265
NspI	RCATGY	1 cut(s)	229
PagI	TCATGA	1 cut(s)	301
PceI	AGGCCT	1 cut(s)	431
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	518
Psp6I	CCWGG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	343
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	363
SalI	GTCGAC	1 cut(s)	482
SaqAI	TTAA	1 cut(s)	126
Sau3AI	GATC	4 cut(s)	115, 219, 343, 418
Sau96I	GGNCC	1 cut(s)	293
ScaI	AGTACT	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	246
SetI	ASST	7 cut(s)	18, 52, 79, 165, 259, 295, 443
SinI	GGWCC	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	363
Sse9I	AATT	2 cut(s)	82, 401
SseBI	AGGCCT	1 cut(s)	431
SspMI	CTAG	1 cut(s)	59
StuI	AGGCCT	1 cut(s)	431
StyD4I	CCNGG	1 cut(s)	244
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	265
TaqI	TCGA	6 cut(s)	135, 165, 222, 312, 318, 483
TasI	AATT	2 cut(s)	82, 401
TatI	WGTACW	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	518
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	1 cut(s)	265
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	3 cut(s)	34, 321, 435
TspRI	CASTG	1 cut(s)	268
VpaK11BI	GGWCC	1 cut(s)	293
XceI	RCATGY	1 cut(s)	229
XmiI	GTMKAC	1 cut(s)	483
XspI	CTAG	1 cut(s)	59
ZrmI	AGTACT	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.