Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0029488

Physical Location & Seq

Genomic Coordinates Reverse (-)

10979148 .. 10980067

Gene Structure 920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTGTTCTTGCAAGCTCCCAGTGAATATGGTGCTTTTTCTTTCTTTGTTCACAACTTCTCTGATGGTCATGGCTGCCTCAGCTGGTAATTTCTACCAAGACTTTGACGTTACATTTGGGGATGGACGTGCCAAGATGCTCAACGGAGGACAGCTTCTCACGCTCAACCTTGACCAGGCATCTGGGTCTGGTTTCAAGTCCAAAAATGAGTATTTATTTGGAAGGATTGATATGCAGATCAAGTTGGTCACTGGGAACTCGGCTGGAACCGTCACTGCCTACTATATATGTCCAACTCATGATGAAATCGACTTTGAGTTTTTGGGGAATGTATCTGGAGATCCCTACACTCTCCATACCAATGTGTTCAGCCAAGGAAAAGGGAACAGAGAACAGCAGTTCCAACTTTGGTTTGATCCCACAAATGCCTTCCACACTTACTCCATTGTATGGAACTCCCAACGCATTATATTCTTGGTGGACAACATTCCAATCAGAGTGTTCAACAACCTGGAATCAGTTGGAGTTCCATTCCCTAAAAACCAGCCCATGCGGATTTACTCAAGCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009612 GO:0009628 GO:0009664 GO:0009719 GO:0009725 GO:0009733 GO:0009741 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046527 GO:0050896 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

191

Amino Acids

21.33

Weight (kDa)

5.85

Isoelectric Point (pI)

22.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	32 - 190	3.2e-54	Glycosyl hydrolases family 16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0029488)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g13310
rosa_multiflora	Rmu_co8296425.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	450
AciI	CCGC	1 cut(s)	553
AclWI	GGATC	2 cut(s)	335, 410
AfiI	CCNNNNNNNGG	2 cut(s)	175, 450
AgsI	TTSAA	2 cut(s)	196, 505
AjiI	CACGTC	1 cut(s)	128
AjnI	CCWGG	2 cut(s)	174, 510
AloI	GAACNNNNNNTCC	2 cut(s)	384, 416
AluBI	AGCT	3 cut(s)	16, 83, 154
AluI	AGCT	3 cut(s)	16, 83, 154
AlwI	GGATC	2 cut(s)	335, 410
ApeKI	GCWGC	1 cut(s)	74
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
BbvCI	CCTCAGC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	2 cut(s)	58, 116
BciT130I	CCWGG	2 cut(s)	176, 512
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	2 cut(s)	176, 512
BmgBI	CACGTC	1 cut(s)	128
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	2 cut(s)	176, 512
BmrI	ACTGGG	2 cut(s)	14, 261
BmsI	GCATC	2 cut(s)	126, 188
BmuI	ACTGGG	2 cut(s)	14, 261
BpmI	CTGGAG	1 cut(s)	357
Bpu10I	CCTNAGC	1 cut(s)	79
BpuEI	CTTGAG	1 cut(s)	547
BsaJI	CCNNGG	1 cut(s)	373
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 450
Bse1I	ACTGG	2 cut(s)	20, 256
BseBI	CCWGG	2 cut(s)	176, 512
BseDI	CCNNGG	1 cut(s)	373
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	2 cut(s)	175, 450
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	2 cut(s)	20, 256
BseXI	GCAGC	1 cut(s)	61
BslI	CCNNNNNNNGG	2 cut(s)	175, 450
Bsp143I	GATC	3 cut(s)	237, 340, 415
BspACI	CCGC	1 cut(s)	553
BspCNI	CTCAG	1 cut(s)	92
BspHI	TCATGA	1 cut(s)	298
BspLI	GGNNCC	1 cut(s)	268
BspPI	GGATC	2 cut(s)	335, 410
BsrI	ACTGG	2 cut(s)	20, 256
BssECI	CCNNGG	1 cut(s)	373
BssMI	GATC	3 cut(s)	237, 340, 415
BssT1I	CCWWGG	1 cut(s)	373
Bst2UI	CCWGG	2 cut(s)	176, 512
Bst4CI	ACNGT	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	14
BstDEI	CTNAG	1 cut(s)	79
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	127
BstKTI	GATC	3 cut(s)	240, 343, 418
BstMBI	GATC	3 cut(s)	237, 340, 415
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 160
BstNI	CCWGG	2 cut(s)	176, 512
BstSCI	CCNGG	2 cut(s)	174, 510
BstV1I	GCAGC	1 cut(s)	61
BstX2I	RGATCY	1 cut(s)	340
BstXI	CCANNNNNNTGG	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	340
BtrI	CACGTC	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	127
BtsI	GCAGTG	1 cut(s)	273
BtsIMutI	CAGTG	3 cut(s)	27, 249, 273
Cac8I	GCNNGC	1 cut(s)	14
CciI	TCATGA	1 cut(s)	298
CviAII	CATG	3 cut(s)	70, 299, 550
CviJI	RGCY	8 cut(s)	16, 74, 83, 154, 263, 372, 547, 567
CviKI_1	RGCY	8 cut(s)	16, 74, 83, 154, 263, 372, 547, 567
DdeI	CTNAG	1 cut(s)	79
DpnI	GATC	3 cut(s)	239, 342, 417
DpnII	GATC	3 cut(s)	237, 340, 415
Eco130I	CCWWGG	1 cut(s)	373
EcoNI	CCTNNNNNAGG	1 cut(s)	173
EcoRII	CCWGG	2 cut(s)	174, 510
EcoT14I	CCWWGG	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	373
FaeI	CATG	3 cut(s)	73, 302, 553
FatI	CATG	3 cut(s)	69, 298, 549
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	75
GsuI	CTGGAG	1 cut(s)	357
Hin1II	CATG	3 cut(s)	73, 302, 553
HinfI	GANTC	1 cut(s)	515
Hpy166II	GTNNAC	2 cut(s)	51, 481
Hpy188I	TCNGA	2 cut(s)	63, 497
Hpy188III	TCNNGA	2 cut(s)	299, 336
Hpy8I	GTNNAC	2 cut(s)	51, 481
HpyAV	CCTTC	2 cut(s)	216, 439
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	2 cut(s)	108, 127
HpyCH4V	TGCA	2 cut(s)	12, 235
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 160
HpyF3I	CTNAG	1 cut(s)	79
HpySE526I	ACGT	2 cut(s)	108, 127
Hsp92II	CATG	3 cut(s)	73, 302, 553
Kzo9I	GATC	3 cut(s)	237, 340, 415
LmnI	GCTCC	1 cut(s)	21
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	2 cut(s)	126, 188
MaeII	ACGT	2 cut(s)	108, 127
MaeIII	GTNAC	3 cut(s)	109, 247, 271
MalI	GATC	3 cut(s)	239, 342, 417
MboI	GATC	3 cut(s)	237, 340, 415
MflI	RGATCY	1 cut(s)	340
MluCI	AATT	1 cut(s)	88
MmeI	TCCRAC	3 cut(s)	317, 427, 502
MnlI	CCTC	2 cut(s)	88, 140
MslI	CAYNNNNRTG	1 cut(s)	360
MspA1I	CMGCKG	1 cut(s)	83
MspR9I	CCNGG	2 cut(s)	176, 512
MvaI	CCWGG	2 cut(s)	176, 512
MwoI	GCNNNNNNNGC	2 cut(s)	80, 160
NdeII	GATC	3 cut(s)	237, 340, 415
NlaIII	CATG	3 cut(s)	73, 302, 553
NlaIV	GGNNCC	1 cut(s)	268
NmeAIII	GCCGAG	1 cut(s)	239
NmuCI	GTSAC	2 cut(s)	247, 271
PagI	TCATGA	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	515
PflMI	CCANNNNNTGG	1 cut(s)	450
PkrI	GCNGC	1 cut(s)	76
Psp6I	CCWGG	2 cut(s)	174, 510
PspGI	CCWGG	2 cut(s)	174, 510
PspN4I	GGNNCC	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	340
PvuII	CAGCTG	1 cut(s)	83
RseI	CAYNNNNRTG	1 cut(s)	360
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	3 cut(s)	237, 340, 415
ScrFI	CCNGG	2 cut(s)	176, 512
SetI	ASST	7 cut(s)	18, 85, 111, 130, 156, 171, 513
SfaNI	GCATC	2 cut(s)	126, 188
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	562
SmoI	CTYRAG	1 cut(s)	562
Sse9I	AATT	1 cut(s)	88
SsiI	CCGC	1 cut(s)	553
StyD4I	CCNGG	2 cut(s)	174, 510
StyI	CCWWGG	1 cut(s)	373
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	2 cut(s)	111, 130
TaqI	TCGA	1 cut(s)	309
TasI	AATT	1 cut(s)	88
TfiI	GAWTC	1 cut(s)	515
TscAI	CASTG	3 cut(s)	27, 256, 280
TseFI	GTSAC	2 cut(s)	247, 271
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	2 cut(s)	247, 271
TspDTI	ATGAA	1 cut(s)	318
TspGWI	ACGGA	1 cut(s)	159
TspRI	CASTG	3 cut(s)	27, 256, 280
Van91I	CCANNNNNTGG	1 cut(s)	450
XagI	CCTNNNNNAGG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.