Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0024665

Physical Location & Seq

Genomic Coordinates Forward (+)

11282702 .. 11283259

Gene Structure 558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCTTGCTCCTCCATCAAGGCCATCTCCTCCTCCGCCTTCACCGCCTCCCTTCCGCCGTCTCAAACCAAACCACCACCGTCCATATCCTACCTTCTTTCCTTCCTCCACGCCACCTCCCGCCCCATCTCCTTAAAACTCTCCCGTTCTCGTTCCCATAATTCGCATTTCCATTCTTTTCTCATAACCAACGTTCTAAAAAAAGCCGAGTCATCTTCCGACACATATCTTTCCAAGTCCTTCCAGCTTCCCAATCCAAGGTCCTCAGATTCAACTCCGACCGTTCTGGTCACCGAAAAACTCGGAGAAGCCGGTCTTGAAGTCCTACGTGGCTTTGGCAACTTGGAGTGCGCGTACAACCTCTCCCCTGAGGAGCTCTGCGCCAAGATCTCGACATGCGAGGCTTTGATTGTTCGGAGCGGCACGAAGGTGACCAGGCAGGTGTTTGAGGCCGCCAAAGGGAGGTTGAAGGTGGTGGGAAGAGCTGGTGTGGGGATAGACAATGTGGATCGATCATTTTATGCAGGCGGCTACGGAGTTTGGATGCTTGGTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00260 ko00680 ko01100 ko01120 ko01130 ko01200 ko01230 map00260 map00680 map01100 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C ACT

Protein Analysis

186

Amino Acids

19.94

Weight (kDa)

9.62

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh	PF00389	95 - 170	3.6e-16	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0024665)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g07660 pycom17g13700
rosa_multiflora	Rmu_co8216346.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	430
Acc36I	ACCTGC	1 cut(s)	430
AccBSI	CCGCTC	1 cut(s)	420
AccII	CGCG	1 cut(s)	353
AciI	CCGC	7 cut(s)	36, 45, 56, 121, 420, 453, 528
AclI	AACGTT	1 cut(s)	192
AclWI	GGATC	1 cut(s)	516
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	3 cut(s)	258, 459, 462
AgsI	TTSAA	3 cut(s)	273, 320, 469
AjnI	CCWGG	1 cut(s)	434
AleI	CACNNNNGTG	1 cut(s)	428
AluBI	AGCT	3 cut(s)	247, 376, 485
AluI	AGCT	3 cut(s)	247, 376, 485
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	1 cut(s)	516
AoxI	GGCC	2 cut(s)	21, 450
AspLEI	GCGC	2 cut(s)	353, 383
AspS9I	GGNCC	1 cut(s)	261
AsuHPI	GGTGA	3 cut(s)	34, 283, 442
AvaII	GGWCC	1 cut(s)	261
AxyI	CCTNAGG	1 cut(s)	369
BanII	GRGCYC	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	378
BccI	CCATC	3 cut(s)	23, 32, 134
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	436
BcoDI	GTCTC	1 cut(s)	66
BfuAI	ACCTGC	1 cut(s)	430
BglII	AGATCT	1 cut(s)	387
BisI	GCNGC	3 cut(s)	421, 453, 529
BlsI	GCNGC	3 cut(s)	422, 454, 530
Bme1390I	CCNGG	1 cut(s)	436
Bme18I	GGWCC	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	261
BmrFI	CCNGG	1 cut(s)	436
BmsI	GCATC	1 cut(s)	534
Bsa29I	ATCGAT	1 cut(s)	511
BsaAI	YACGTR	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	257
BsaXI	ACNNNNNCTCC	6 cut(s)	101, 131, 338, 347, 368, 377
Bsc4I	CCNNNNNNNGG	3 cut(s)	258, 459, 462
Bse118I	RCCGGY	1 cut(s)	311
Bse21I	CCTNAGG	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	436
BseCI	ATCGAT	1 cut(s)	511
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	1 cut(s)	549
BseLI	CCNNNNNNNGG	3 cut(s)	258, 459, 462
BseMII	CTCAG	2 cut(s)	279, 360
BseRI	GAGGAG	3 cut(s)	19, 22, 386
Bsh1236I	CGCG	1 cut(s)	353
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	2 cut(s)	23, 452
BshVI	ATCGAT	1 cut(s)	511
BsiEI	CGRYCG	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	378
BsiSI	CCGG	1 cut(s)	312
BslI	CCNNNNNNNGG	3 cut(s)	258, 459, 462
BsmAI	GTCTC	1 cut(s)	66
BsmBI	CGTCTC	1 cut(s)	66
BsnI	GGCC	2 cut(s)	23, 452
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp143I	GATC	3 cut(s)	387, 508, 512
BspACI	CCGC	7 cut(s)	36, 45, 56, 121, 420, 453, 528
BspANI	GGCC	2 cut(s)	23, 452
BspCNI	CTCAG	2 cut(s)	278, 361
BspDI	ATCGAT	1 cut(s)	511
BspFNI	CGCG	1 cut(s)	353
BspMI	ACCTGC	1 cut(s)	430
BspPI	GGATC	1 cut(s)	516
BspQI	GCTCTTC	1 cut(s)	475
BsrBI	CCGCTC	1 cut(s)	420
BsrFI	RCCGGY	1 cut(s)	311
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	3 cut(s)	387, 508, 512
BssT1I	CCWWGG	1 cut(s)	257
Bst2UI	CCWGG	1 cut(s)	436
Bst4CI	ACNGT	2 cut(s)	81, 283
Bst6I	CTCTTC	1 cut(s)	475
BstBAI	YACGTR	1 cut(s)	329
BstC8I	GCNNGC	2 cut(s)	7, 526
BstDEI	CTNAG	2 cut(s)	265, 369
BstEII	GGTNACC	2 cut(s)	289, 430
BstF5I	GGATG	1 cut(s)	549
BstFNI	CGCG	1 cut(s)	353
BstHHI	GCGC	2 cut(s)	353, 383
BstKTI	GATC	3 cut(s)	390, 511, 515
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	3 cut(s)	387, 508, 512
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstNI	CCWGG	1 cut(s)	436
BstNSI	RCATGY	1 cut(s)	399
BstPI	GGTNACC	2 cut(s)	289, 430
BstSCI	CCNGG	1 cut(s)	434
BstUI	CGCG	1 cut(s)	353
BstX2I	RGATCY	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	387
Bsu15I	ATCGAT	1 cut(s)	511
Bsu36I	CCTNAGG	1 cut(s)	369
BsuRI	GGCC	2 cut(s)	23, 452
BsuTUI	ATCGAT	1 cut(s)	511
BtsCI	GGATG	1 cut(s)	549
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	2 cut(s)	7, 526
CfoI	GCGC	2 cut(s)	353, 383
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	261
ClaI	ATCGAT	1 cut(s)	511
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	1 cut(s)	396
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	2 cut(s)	265, 369
DpnI	GATC	3 cut(s)	389, 510, 514
DpnII	GATC	3 cut(s)	387, 508, 512
Eam1104I	CTCTTC	1 cut(s)	475
EarI	CTCTTC	1 cut(s)	475
EciI	GGCGGA	2 cut(s)	25, 45
Ecl136II	GAGCTC	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	378
Eco47I	GGWCC	1 cut(s)	261
Eco53kI	GAGCTC	1 cut(s)	376
Eco81I	CCTNAGG	1 cut(s)	369
Eco91I	GGTNACC	2 cut(s)	289, 430
EcoICRI	GAGCTC	1 cut(s)	376
EcoO109I	RGGNCCY	1 cut(s)	261
EcoO65I	GGTNACC	2 cut(s)	289, 430
EcoRII	CCWGG	1 cut(s)	434
EcoT14I	CCWWGG	1 cut(s)	257
EcoT38I	GRGCYC	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	257
Esp3I	CGTCTC	1 cut(s)	66
FaeI	CATG	1 cut(s)	399
FaiI	YATR	6 cut(s)	86, 159, 185, 226, 397, 522
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FatI	CATG	1 cut(s)	395
FauI	CCCGC	1 cut(s)	128
Fnu4HI	GCNGC	3 cut(s)	421, 453, 529
FriOI	GRGCYC	1 cut(s)	378
Fsp4HI	GCNGC	3 cut(s)	421, 453, 529
GlaI	GCGC	2 cut(s)	352, 382
GluI	GCNGC	3 cut(s)	421, 453, 529
HaeIII	GGCC	2 cut(s)	23, 452
HapII	CCGG	1 cut(s)	312
HhaI	GCGC	2 cut(s)	353, 383
Hin1II	CATG	1 cut(s)	399
Hin6I	GCGC	2 cut(s)	351, 381
HinP1I	GCGC	2 cut(s)	351, 381
HinfI	GANTC	2 cut(s)	209, 269
HpaII	CCGG	1 cut(s)	312
HphI	GGTGA	3 cut(s)	34, 283, 442
Hpy188I	TCNGA	5 cut(s)	220, 268, 279, 305, 417
Hpy188III	TCNNGA	2 cut(s)	317, 391
HpyAV	CCTTC	7 cut(s)	49, 62, 104, 112, 250, 421, 463
HpyCH4III	ACNGT	2 cut(s)	81, 283
HpyCH4IV	ACGT	2 cut(s)	192, 328
HpyCH4V	TGCA	1 cut(s)	524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpyF3I	CTNAG	2 cut(s)	265, 369
HpySE526I	ACGT	2 cut(s)	192, 328
Hsp92II	CATG	1 cut(s)	399
HspAI	GCGC	2 cut(s)	351, 381
Kzo9I	GATC	3 cut(s)	387, 508, 512
LguI	GCTCTTC	1 cut(s)	475
LmnI	GCTCC	3 cut(s)	14, 373, 417
LpnPI	CCDG	9 cut(s)	257, 272, 325, 381, 421, 425, 448, 471, 510
LweI	GCATC	1 cut(s)	534
MaeII	ACGT	2 cut(s)	192, 328
MaeIII	GTNAC	2 cut(s)	289, 430
MalI	GATC	3 cut(s)	389, 510, 514
MbiI	CCGCTC	1 cut(s)	420
MboI	GATC	3 cut(s)	387, 508, 512
MboII	GAAGA	2 cut(s)	207, 492
MflI	RGATCY	1 cut(s)	387
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	1 cut(s)	160
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	2 cut(s)	243, 302
MseI	TTAA	2 cut(s)	134, 556
MslI	CAYNNNNRTG	1 cut(s)	428
MspI	CCGG	1 cut(s)	312
MspR9I	CCNGG	1 cut(s)	436
MvaI	CCWGG	1 cut(s)	436
MvnI	CGCG	1 cut(s)	353
MwoI	GCNNNNNNNGC	1 cut(s)	44
NdeII	GATC	3 cut(s)	387, 508, 512
NlaIII	CATG	1 cut(s)	399
NmeAIII	GCCGAG	1 cut(s)	232
NmuCI	GTSAC	2 cut(s)	289, 430
NspI	RCATGY	1 cut(s)	399
OliI	CACNNNNGTG	1 cut(s)	428
PaqCI	CACCTGC	1 cut(s)	430
PciSI	GCTCTTC	1 cut(s)	475
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	3 cut(s)	422, 454, 530
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
Ppu21I	YACGTR	1 cut(s)	329
PpuMI	RGGWCCY	1 cut(s)	261
Psp124BI	GAGCTC	1 cut(s)	378
Psp1406I	AACGTT	1 cut(s)	192
Psp5II	RGGWCCY	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	434
PspEI	GGTNACC	2 cut(s)	289, 430
PspGI	CCWGG	1 cut(s)	434
PspPI	GGNCC	1 cut(s)	261
PspPPI	RGGWCCY	1 cut(s)	261
PsuI	RGATCY	1 cut(s)	387
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
RseI	CAYNNNNRTG	1 cut(s)	428
SacI	GAGCTC	1 cut(s)	378
SapI	GCTCTTC	1 cut(s)	475
SaqAI	TTAA	2 cut(s)	134, 556
SatI	GCNGC	3 cut(s)	421, 453, 529
Sau3AI	GATC	3 cut(s)	387, 508, 512
Sau96I	GGNCC	1 cut(s)	261
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	436
SduI	GDGCHC	1 cut(s)	378
SfaNI	GCATC	1 cut(s)	534
SinI	GGWCC	1 cut(s)	261
SmiMI	CAYNNNNRTG	1 cut(s)	428
Sse9I	AATT	1 cut(s)	160
SsiI	CCGC	7 cut(s)	36, 45, 56, 121, 420, 453, 528
SstI	GAGCTC	1 cut(s)	378
StyD4I	CCNGG	1 cut(s)	434
StyI	CCWWGG	1 cut(s)	257
TaaI	ACNGT	2 cut(s)	81, 283
TaiI	ACGT	2 cut(s)	195, 331
TaqI	TCGA	2 cut(s)	392, 511
TasI	AATT	1 cut(s)	160
TauI	GCSGC	3 cut(s)	423, 455, 531
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	2 cut(s)	134, 556
Tru9I	TTAA	2 cut(s)	134, 556
TseFI	GTSAC	2 cut(s)	289, 430
Tsp45I	GTSAC	2 cut(s)	289, 430
TspGWI	ACGGA	1 cut(s)	549
VpaK11BI	GGWCC	1 cut(s)	261
XceI	RCATGY	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.