Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0022253

Physical Location & Seq

Genomic Coordinates Forward (+)

12950177 .. 12952521

Gene Structure 2345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGGGTTTGGAAAATTCCAAATTCTTGTGCTTGCTTATGCCGGCATGGGTTGGGTCTCAGAAGCCATGGAGATGATGTTACTTTCTTTTGTTGGACCAGCAGTTCAGTCTGCTTGGGGTCTTTCTTCTAAACAAGAAAGTTTTATAACTAGTGTGGTTTTTGCTGGAATGCTAGTCGGAGCATACTCATGGGGCATCGTTTCTGATAAACATGGACGTAGGAAAGGATTCCTCATTACAGCCACAATTACTTGTGGAGCTGGTTTTCTGAGTGCTCTTTCCCCTAATTATGCATCCTTGCTCGTTCTTCGTTGCTTGGTTGGTGTTGGTTTGGGAGGTGGCCCTGTACTCTCATCCTGGTTTCTGGAGTTCATTCCTGCTCCTAACAGAGGCACGTGGATGGTTATTTTTTCAGCATTTTGGACTCTTGGAACAATTCTTGAGGCTTCACTTGCATGGTTTGTCATGCCAAACTTTGGTTGGAGGTGGCTACTTGCCTTGTCTTCACTCCCTTCCTCGCTTCTCCTCATATTCTATTGGGTTGCACCTGAATCACCAAGATATTTGTGCTTAAAAGGTCGAACAACTGAGGCAATCAATATTTTGGAGAAAGTAGCAAGAATGAATGGAATGAAACTCCCTTCTGGGAATCTTGTTTCTGATTTGAAAATAGAGTTATCTGAAGAGATTACTTCATCAGAAGATGCACATTTGATCGATCACCGACAGATGATAAAGATCCAATTCCTGCGGAGATGGATTCCAATATGGGTGGCATCTCTTCACTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006855 GO:0008028 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0008519 GO:0015075 GO:0015101 GO:0015238 GO:0015318 GO:0015651 GO:0015695 GO:0015696 GO:0015697 GO:0015711 GO:0015718 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0034220 GO:0035461 GO:0042221 GO:0042493 GO:0044425 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051180 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0090416 GO:0090417 GO:0090482 GO:0098655 GO:0098656 GO:1903825 GO:1905039 GO:2001142 GO:2001143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 Sugar_tr

Protein Analysis

264

Amino Acids

29.07

Weight (kDa)

8.94

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	19 - 187	6.9e-25	Major Facilitator Superfamily
Sugar_tr	PF00083	42 - 235	2.3e-32	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022253)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36460
prunus_persica	Prupe.3G027200_v2.0.a1 Prupe.3G027200_v2.0.a1
pyrus_communis	pycom17g15120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	146
AccB7I	CCANNNNNTGG	1 cut(s)	476
AciI	CCGC	1 cut(s)	751
AclWI	GGATC	1 cut(s)	733
AcsI	RAATTY	2 cut(s)	14, 21
AcuI	CTGAAG	1 cut(s)	702
AcvI	CACGTG	1 cut(s)	396
AfaI	GTAC	1 cut(s)	348
AfiI	CCNNNNNNNGG	2 cut(s)	389, 476
AgsI	TTSAA	1 cut(s)	667
AhlI	ACTAGT	1 cut(s)	149
AjnI	CCWGG	1 cut(s)	356
AloI	GAACNNNNNNTCC	2 cut(s)	87, 119
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
Alw21I	GWGCWC	1 cut(s)	277
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	1 cut(s)	733
AoxI	GGCC	1 cut(s)	340
ApoI	RAATTY	2 cut(s)	14, 21
Asp700I	GAANNNNTTC	1 cut(s)	227
AspS9I	GGNCC	2 cut(s)	95, 341
AsuHPI	GGTGA	2 cut(s)	546, 713
AvaII	GGWCC	1 cut(s)	95
BbrPI	CACGTG	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	495
Bbv12I	GWGCWC	1 cut(s)	277
BccI	CCATC	2 cut(s)	394, 750
BciT130I	CCWGG	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	61
BcuI	ACTAGT	1 cut(s)	149
BfaI	CTAG	2 cut(s)	150, 173
Bme1390I	CCNGG	1 cut(s)	358
Bme18I	GGWCC	1 cut(s)	95
BmgT120I	GGNCC	2 cut(s)	95, 341
BmrFI	CCNGG	1 cut(s)	358
BmsI	GCATC	4 cut(s)	204, 302, 694, 785
BpiI	GAAGAC	1 cut(s)	495
BpmI	CTGGAG	1 cut(s)	386
BpuEI	CTTGAG	1 cut(s)	461
Bsa29I	ATCGAT	1 cut(s)	717
BsaAI	YACGTR	1 cut(s)	396
BsaBI	GATNNNNATC	1 cut(s)	737
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	66
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	2 cut(s)	389, 476
Bse118I	RCCGGY	1 cut(s)	41
Bse8I	GATNNNNATC	1 cut(s)	737
BseBI	CCWGG	1 cut(s)	358
BseCI	ATCGAT	1 cut(s)	717
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	3 cut(s)	293, 353, 405
BseJI	GATNNNNATC	1 cut(s)	737
BseLI	CCNNNNNNNGG	2 cut(s)	389, 476
BseMII	CTCAG	3 cut(s)	72, 260, 579
BseRI	GAGGAG	1 cut(s)	515
BshFI	GGCC	1 cut(s)	342
BshVI	ATCGAT	1 cut(s)	717
BsiHKAI	GWGCWC	1 cut(s)	277
BsiSI	CCGG	1 cut(s)	42
BslI	CCNNNNNNNGG	2 cut(s)	389, 476
BsmAI	GTCTC	1 cut(s)	61
BsmI	GAATGC	1 cut(s)	174
BsnI	GGCC	1 cut(s)	342
Bso31I	GGTCTC	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	3 cut(s)	714, 718, 738
Bsp19I	CCATGG	1 cut(s)	66
BspACI	CCGC	1 cut(s)	751
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	3 cut(s)	71, 261, 580
BspDI	ATCGAT	1 cut(s)	717
BspPI	GGATC	1 cut(s)	733
BspTNI	GGTCTC	1 cut(s)	61
BsrFI	RCCGGY	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	3 cut(s)	714, 718, 738
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	358
Bst4CI	ACNGT	1 cut(s)	788
Bst6I	CTCTTC	2 cut(s)	678, 786
BstBAI	YACGTR	1 cut(s)	396
BstC8I	GCNNGC	2 cut(s)	33, 43
BstDEI	CTNAG	3 cut(s)	58, 269, 588
BstDSI	CCRYGG	1 cut(s)	66
BstENI	CCTNNNNNAGG	1 cut(s)	387
BstF5I	GGATG	3 cut(s)	293, 353, 405
BstKTI	GATC	3 cut(s)	717, 721, 741
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	3 cut(s)	714, 718, 738
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstNI	CCWGG	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	356
BstV2I	GAAGAC	1 cut(s)	495
BstX2I	RGATCY	1 cut(s)	738
BstYI	RGATCY	1 cut(s)	738
Bsu15I	ATCGAT	1 cut(s)	717
BsuRI	GGCC	1 cut(s)	342
BsuTUI	ATCGAT	1 cut(s)	717
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	3 cut(s)	293, 353, 405
BtsIMutI	CAGTG	1 cut(s)	784
Cac8I	GCNNGC	2 cut(s)	33, 43
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	95, 341
ClaI	ATCGAT	1 cut(s)	717
Csp6I	GTAC	1 cut(s)	347
CspCI	CAANNNNNGTGG	2 cut(s)	753, 788
CviAII	CATG	6 cut(s)	46, 67, 189, 212, 456, 466
CviJI	RGCY	6 cut(s)	65, 242, 260, 342, 446, 490
CviKI_1	RGCY	6 cut(s)	65, 242, 260, 342, 446, 490
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	3 cut(s)	58, 269, 588
DpnI	GATC	3 cut(s)	716, 720, 740
DpnII	GATC	3 cut(s)	714, 718, 738
Eam1104I	CTCTTC	2 cut(s)	678, 786
EarI	CTCTTC	2 cut(s)	678, 786
Eco130I	CCWWGG	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	95
Eco57I	CTGAAG	1 cut(s)	702
Eco72I	CACGTG	1 cut(s)	396
EcoNI	CCTNNNNNAGG	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	66
EcoT22I	ATGCAT	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	6 cut(s)	49, 70, 192, 215, 459, 469
FatI	CATG	6 cut(s)	45, 66, 188, 211, 455, 465
FokI	GGATG	3 cut(s)	280, 340, 412
FspBI	CTAG	2 cut(s)	150, 173
GsuI	CTGGAG	1 cut(s)	386
HaeIII	GGCC	1 cut(s)	342
HapII	CCGG	1 cut(s)	42
Hin1II	CATG	6 cut(s)	49, 70, 192, 215, 459, 469
HinfI	GANTC	5 cut(s)	228, 424, 551, 649, 760
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	2 cut(s)	546, 713
Hpy188I	TCNGA	7 cut(s)	61, 179, 205, 270, 661, 682, 700
Hpy188III	TCNNGA	2 cut(s)	365, 440
HpyAV	CCTTC	2 cut(s)	522, 651
HpyCH4III	ACNGT	1 cut(s)	788
HpyCH4IV	ACGT	2 cut(s)	217, 395
HpyCH4V	TGCA	4 cut(s)	293, 455, 545, 707
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	3 cut(s)	58, 269, 588
HpySE526I	ACGT	2 cut(s)	217, 395
Hsp92II	CATG	6 cut(s)	49, 70, 192, 215, 459, 469
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
Kzo9I	GATC	3 cut(s)	714, 718, 738
LmnI	GCTCC	3 cut(s)	179, 257, 385
LweI	GCATC	4 cut(s)	204, 302, 694, 785
MaeI	CTAG	2 cut(s)	150, 173
MaeII	ACGT	2 cut(s)	217, 395
MaeIII	GTNAC	1 cut(s)	78
MalI	GATC	3 cut(s)	716, 720, 740
MboI	GATC	3 cut(s)	714, 718, 738
MboII	GAAGA	6 cut(s)	117, 299, 495, 695, 713, 773
MflI	RGATCY	1 cut(s)	738
MhlI	GDGCHC	1 cut(s)	277
MluCI	AATT	6 cut(s)	14, 21, 246, 286, 435, 743
MlyI	GAGTC	1 cut(s)	418
MmeI	TCCRAC	3 cut(s)	73, 157, 461
MnlI	CCTC	8 cut(s)	242, 329, 383, 436, 477, 526, 536, 583
Mph1103I	ATGCAT	1 cut(s)	295
MroNI	GCCGGC	1 cut(s)	41
MroXI	GAANNNNTTC	1 cut(s)	227
MseI	TTAA	2 cut(s)	572, 790
MslI	CAYNNNNRTG	4 cut(s)	71, 187, 398, 454
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	1 cut(s)	358
Mva1269I	GAATGC	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	358
MwoI	GCNNNNNNNGC	1 cut(s)	452
NaeI	GCCGGC	1 cut(s)	43
NcoI	CCATGG	1 cut(s)	66
NdeII	GATC	3 cut(s)	714, 718, 738
NgoMIV	GCCGGC	1 cut(s)	41
NlaIII	CATG	6 cut(s)	49, 70, 192, 215, 459, 469
NsiI	ATGCAT	1 cut(s)	295
PctI	GAATGC	1 cut(s)	174
PdiI	GCCGGC	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	227
PfeI	GAWTC	4 cut(s)	228, 551, 649, 760
PflMI	CCANNNNNTGG	1 cut(s)	476
PleI	GAGTC	1 cut(s)	418
PmaCI	CACGTG	1 cut(s)	396
PmlI	CACGTG	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	418
Ppu21I	YACGTR	1 cut(s)	396
PsiI	TTATAA	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	356
PspCI	CACGTG	1 cut(s)	396
PspGI	CCWGG	1 cut(s)	356
PspPI	GGNCC	2 cut(s)	95, 341
PsuI	RGATCY	1 cut(s)	738
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
RseI	CAYNNNNRTG	4 cut(s)	71, 187, 398, 454
SaqAI	TTAA	2 cut(s)	572, 790
Sau3AI	GATC	3 cut(s)	714, 718, 738
Sau96I	GGNCC	2 cut(s)	95, 341
SchI	GAGTC	1 cut(s)	418
ScrFI	CCNGG	1 cut(s)	358
SduI	GDGCHC	1 cut(s)	277
SetI	ASST	7 cut(s)	220, 262, 340, 398, 488, 550, 580
SfaNI	GCATC	4 cut(s)	204, 302, 694, 785
SinI	GGWCC	1 cut(s)	95
SmiMI	CAYNNNNRTG	4 cut(s)	71, 187, 398, 454
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
SpeI	ACTAGT	1 cut(s)	149
Sse9I	AATT	6 cut(s)	14, 21, 246, 286, 435, 743
SsiI	CCGC	1 cut(s)	751
SspI	AATATT	1 cut(s)	601
SspMI	CTAG	2 cut(s)	150, 173
StyD4I	CCNGG	1 cut(s)	356
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	788
TaiI	ACGT	2 cut(s)	220, 398
TaqI	TCGA	2 cut(s)	580, 717
TasI	AATT	6 cut(s)	14, 21, 246, 286, 435, 743
TatI	WGTACW	1 cut(s)	346
TfiI	GAWTC	4 cut(s)	228, 551, 649, 760
Tru1I	TTAA	2 cut(s)	572, 790
Tru9I	TTAA	2 cut(s)	572, 790
TscAI	CASTG	1 cut(s)	791
TspDTI	ATGAA	4 cut(s)	361, 638, 647, 684
TspRI	CASTG	1 cut(s)	791
Van91I	CCANNNNNTGG	1 cut(s)	476
VpaK11BI	GGWCC	1 cut(s)	95
XagI	CCTNNNNNAGG	1 cut(s)	387
XapI	RAATTY	2 cut(s)	14, 21
XcmI	CCANNNNNNNNNTGG	1 cut(s)	477
XmnI	GAANNNNTTC	1 cut(s)	227
XspI	CTAG	2 cut(s)	150, 173
Zsp2I	ATGCAT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.