Prupe.3G027200_v2.0.a1

Organic cation carnitine transporter

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
2015795 .. 2020810
5016 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G027200.4

Sequence Viewer

Length: 1488 bp
ATGGGAGATGGAAGCCCGGAATACACTGTTGATGAGGCTCTTGTGGCCATGGGGTTTGGAAAGTTTCAAATTCTTGTGCTTGCTTATGCTGGCATGGGTTGGGTCTCAGAAGCAATGGAGATGATGCTACTCTCGTTTGTTGGACCAGCGGTTCAGTCTGCTTGGGGTCTTTCTTCTCAACAAGAAAGTTTCATAACCAGTGTGGTTTTTGCTGGAATGCTAGTTGGAGCGTACTCATGGGGCATAGTTTCTGATAAACACGGACGTAGGAAAGGTTTCCTCATTACAGCCACAATTACTTCTGGAGCTGGTTTTCTGAGTGCTCTTTCGCCTAATTATACATCCTTGATCCTTCTTCGTTGTTTGGTCGGTGTTGGTTTGGGAGGTGGCCCTGTACTCTCATCCTGGTTTCTGGAGTTCATTCCTGCTCCTAACAGAGGCACCTGGATGGTTGTTTTTTCAGCTTTTTGGACTCTTGGAACAATTCTCGAGGCTTCACTTGCATGGTTTGTCATGCCAACGCTGGGCTGGAGGTGGCTACTTGGACTGTCTTCACTCCCTTCATCGCTTCTCCTTGTATTCTATTGGTTAGCACCTGAATCACCCAGGTATTTATGCTTAAAAGGAAGAACAACTGAGGCAATCAATATTTTGGAGAGAGTAGCAAGACTGAATGGAACAAAACTCCCTTCTGGAAATCTTGTTTCTGATTTAAAAATTGAGTTATCTGAAAAGAGTACTCTATCAGAAGATGCACGTTTGATCTCACCAACAGAAAATGAAGATACATCATCTAAGGAGATGGATTCTTCTGATATGGGGGGCATCTCTTCACTGTCAATGCTTCTTTCCCCAAAATTAGTCAGATCTACCTTGCTCTTATGGGTAGTATTCTTTGGGAATGCTTTTTCATATTATGGCCTGGTGCTTCTGACCACTGAGTTGACCAATGGACATAGTAAATGTACGCCAGATACATTACGGTCAGACAAATTGCAGGATACTGGCTATAGAGATGTTTTCATCGCTAGTTTTGCAGAGTTACCTGGGCTCCTCATATCTGCTGCCACGGTCGATAGACTGGGTCGTAAGCTTTCAATGTCAGCCATGTTCTTCTTGTGTTGCATTTTTCTACTCCCCTTAGTAATTCAACAGTCTCAGGGCTTGACCACTAGCCTTCTTTTTGGAGCTCGCATATGCATCACAGCAACCTTCACAATAGTCTATATATATGCCCCAGAGATATACCCAACCTCAGTCCGAACAACCGGCGTCGGAGTTGCAAGTGCAATGGGAAGAATTGGTGGAATGATATGTCCTCTGGTGGCAGTAGGTTTGGTACATGGATGCCATCAGACAGCATCCATTCTGCTCTTTGAGATTGTAATTTTTCTTTCCGGGGTATGCGTTTTGCTCTTCCCATTTGAAACCAAGGGACGTGAATTGAGCGATACTGTATCATCTAACTCAAACAACCAAGGCCAGTAA

Protein Analysis

496

Amino Acids

53.49

Weight (kDa)

5.71

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 440
AciI CCGC 1 cut(s) 149
AclWI GGATC 1 cut(s) 343
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 69
AcyI GRCGYC 1 cut(s) 1272
AfaI GTAC 5 cut(s) 233, 396, 739, 967, 1341
AfiI CCNNNNNNNGG 2 cut(s) 437, 524
AgsI TTSAA 4 cut(s) 68, 1098, 1151, 1427
AjiI CACGTC 1 cut(s) 1439
AjnI CCWGG 5 cut(s) 404, 443, 605, 921, 1045
AloI GAACNNNNNNTCC 2 cut(s) 135, 167
AluBI AGCT 4 cut(s) 308, 464, 1093, 1190
AluI AGCT 4 cut(s) 308, 464, 1093, 1190
Alw21I GWGCWC 2 cut(s) 325, 1192
Alw26I GTCTC 2 cut(s) 109, 1161
AlwI GGATC 1 cut(s) 343
Ama87I CYCGRG 1 cut(s) 488
AoxI GGCC 4 cut(s) 45, 388, 919, 1480
ApeKI GCWGC 1 cut(s) 1064
ApoI RAATTY 1 cut(s) 69
Asp700I GAANNNNTTC 1 cut(s) 275
AspS9I GGNCC 2 cut(s) 143, 389
AsuC2I CCSGG 2 cut(s) 17, 1399
AsuHPI GGTGA 2 cut(s) 594, 759
AvaI CYCGRG 1 cut(s) 488
AvaII GGWCC 1 cut(s) 143
BalI TGGCCA 1 cut(s) 47
BanI GGYRCC 1 cut(s) 440
BanII GRGCYC 2 cut(s) 1053, 1192
BbsI GAAGAC 1 cut(s) 543
Bbv12I GWGCWC 2 cut(s) 325, 1192
BbvI GCAGC 1 cut(s) 1051
BccI CCATC 4 cut(s) 2, 442, 796, 1359
BciT130I CCWGG 5 cut(s) 406, 445, 607, 923, 1047
BciVI GTATCC 1 cut(s) 994
BcnI CCSGG 2 cut(s) 17, 1399
BcoDI GTCTC 2 cut(s) 109, 1161
BfaI CTAG 3 cut(s) 221, 1029, 1173
BfmI CTRYAG 1 cut(s) 1009
BfuI GTATCC 1 cut(s) 994
BglII AGATCT 1 cut(s) 866
BisI GCNGC 1 cut(s) 1065
BlsI GCNGC 1 cut(s) 1066
BmcAI AGTACT 1 cut(s) 739
Bme1390I CCNGG 7 cut(s) 17, 406, 445, 607, 923, 1047, 1399
Bme18I GGWCC 1 cut(s) 143
BmeT110I CYCGRG 1 cut(s) 488
BmgBI CACGTC 1 cut(s) 1439
BmgT120I GGNCC 2 cut(s) 143, 389
BmiI GGNNCC 2 cut(s) 442, 1052
BmrFI CCNGG 7 cut(s) 17, 406, 445, 607, 923, 1047, 1399
BmrI ACTGGG 1 cut(s) 1091
BmsI GCATC 6 cut(s) 114, 742, 834, 1209, 1337, 1370
BmuI ACTGGG 1 cut(s) 1091
BpiI GAAGAC 1 cut(s) 543
BpmI CTGGAG 3 cut(s) 324, 434, 550
BpuMI CCSGG 2 cut(s) 17, 1399
BsaHI GRCGYC 1 cut(s) 1272
BsaI GGTCTC 1 cut(s) 109
BsaJI CCNNGG 7 cut(s) 48, 605, 1046, 1068, 1398, 1431, 1477
BsaXI ACNNNNNCTCC 2 cut(s) 1035, 1065
Bsc4I CCNNNNNNNGG 2 cut(s) 437, 524
Bse118I RCCGGY 1 cut(s) 1268
Bse1I ACTGG 4 cut(s) 198, 1009, 1086, 1483
Bse3DI GCAATG 2 cut(s) 120, 1296
BseBI CCWGG 5 cut(s) 406, 445, 607, 923, 1047
BseDI CCNNGG 7 cut(s) 48, 605, 1046, 1068, 1398, 1431, 1477
BseGI GGATG 5 cut(s) 341, 401, 453, 1352, 1361
BseLI CCNNNNNNNGG 2 cut(s) 437, 524
BseMI GCAATG 2 cut(s) 120, 1296
BseMII CTCAG 6 cut(s) 120, 308, 627, 930, 1172, 1269
BseNI ACTGG 4 cut(s) 198, 1009, 1086, 1483
BseRI GAGGAG 1 cut(s) 1043
BseXI GCAGC 1 cut(s) 1051
BseYI CCCAGC 1 cut(s) 523
Bsh1285I CGRYCG 1 cut(s) 1074
BshFI GGCC 4 cut(s) 47, 390, 921, 1482
BshNI GGYRCC 1 cut(s) 440
BsiEI CGRYCG 1 cut(s) 1074
BsiHKAI GWGCWC 2 cut(s) 325, 1192
BsiHKCI CYCGRG 1 cut(s) 488
BsiSI CCGG 3 cut(s) 17, 1269, 1398
BslFI GGGAC 1 cut(s) 1449
BslI CCNNNNNNNGG 2 cut(s) 437, 524
BsmAI GTCTC 2 cut(s) 109, 1161
BsmFI GGGAC 1 cut(s) 1449
BsmI GAATGC 2 cut(s) 222, 907
BsnI GGCC 4 cut(s) 47, 390, 921, 1482
Bso31I GGTCTC 1 cut(s) 109
BsoBI CYCGRG 1 cut(s) 488
Bsp1286I GDGCHC 3 cut(s) 325, 1053, 1192
Bsp143I GATC 3 cut(s) 348, 762, 866
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 1 cut(s) 149
BspANI GGCC 4 cut(s) 47, 390, 921, 1482
BspCNI CTCAG 6 cut(s) 119, 309, 628, 931, 1171, 1268
BspLI GGNNCC 2 cut(s) 442, 1052
BspPI GGATC 1 cut(s) 343
BspQI GCTCTTC 1 cut(s) 1421
BspT107I GGYRCC 1 cut(s) 440
BspTNI GGTCTC 1 cut(s) 109
BsrDI GCAATG 2 cut(s) 120, 1296
BsrFI RCCGGY 1 cut(s) 1268
BsrI ACTGG 4 cut(s) 198, 1009, 1086, 1483
BssAI RCCGGY 1 cut(s) 1268
BssECI CCNNGG 7 cut(s) 48, 605, 1046, 1068, 1398, 1431, 1477
BssMI GATC 3 cut(s) 348, 762, 866
BssNI GRCGYC 1 cut(s) 1272
BssT1I CCWWGG 3 cut(s) 48, 1431, 1477
Bst2UI CCWGG 5 cut(s) 406, 445, 607, 923, 1047
Bst4CI ACNGT 7 cut(s) 28, 549, 837, 984, 1072, 1155, 1456
Bst6I CTCTTC 2 cut(s) 835, 1421
BstACI GRCGYC 1 cut(s) 1272
BstC8I GCNNGC 3 cut(s) 81, 91, 1192
BstDEI CTNAG 8 cut(s) 106, 317, 636, 795, 939, 1141, 1158, 1255
BstDSI CCRYGG 2 cut(s) 48, 1068
BstENI CCTNNNNNAGG 1 cut(s) 435
BstF5I GGATG 5 cut(s) 341, 401, 453, 1352, 1361
BstKTI GATC 3 cut(s) 351, 765, 869
BstMAI GTCTC 2 cut(s) 109, 1161
BstMBI GATC 3 cut(s) 348, 762, 866
BstMCI CGRYCG 1 cut(s) 1074
BstMWI GCNNNNNNNGC 3 cut(s) 44, 500, 1034
BstNI CCWGG 5 cut(s) 406, 445, 607, 923, 1047
BstSCI CCNGG 7 cut(s) 15, 404, 443, 605, 921, 1045, 1397
BstSFI CTRYAG 1 cut(s) 1009
BstV1I GCAGC 1 cut(s) 1051
BstV2I GAAGAC 1 cut(s) 543
BstX2I RGATCY 1 cut(s) 866
BstYI RGATCY 1 cut(s) 866
BsuI GTATCC 1 cut(s) 994
BsuRI GGCC 4 cut(s) 47, 390, 921, 1482
BtgI CCRYGG 2 cut(s) 48, 1068
BtgZI GCGATG 2 cut(s) 549, 1009
BtrI CACGTC 1 cut(s) 1439
BtsCI GGATG 5 cut(s) 341, 401, 453, 1352, 1361
BtsIMutI CAGTG 4 cut(s) 24, 205, 833, 936
Cac8I GCNNGC 3 cut(s) 81, 91, 1192
Cfr10I RCCGGY 1 cut(s) 1268
Cfr13I GGNCC 2 cut(s) 143, 389
CseI GACGC 1 cut(s) 1261
Csp6I GTAC 5 cut(s) 232, 395, 738, 966, 1340
CviAII CATG 7 cut(s) 49, 94, 237, 504, 514, 1108, 1343
CviQI GTAC 5 cut(s) 232, 395, 738, 966, 1340
DdeI CTNAG 8 cut(s) 106, 317, 636, 795, 939, 1141, 1158, 1255
DpnI GATC 3 cut(s) 350, 764, 868
DpnII GATC 3 cut(s) 348, 762, 866
DraI TTTAAA 1 cut(s) 714
EaeI YGGCCR 1 cut(s) 45
Eam1104I CTCTTC 2 cut(s) 835, 1421
EarI CTCTTC 2 cut(s) 835, 1421
Ecl136II GAGCTC 1 cut(s) 1190
Eco130I CCWWGG 3 cut(s) 48, 1431, 1477
Eco24I GRGCYC 2 cut(s) 1053, 1192
Eco31I GGTCTC 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 143
Eco53kI GAGCTC 1 cut(s) 1190
Eco88I CYCGRG 1 cut(s) 488
EcoICRI GAGCTC 1 cut(s) 1190
EcoNI CCTNNNNNAGG 1 cut(s) 435
EcoRII CCWGG 5 cut(s) 404, 443, 605, 921, 1045
EcoT14I CCWWGG 3 cut(s) 48, 1431, 1477
EcoT22I ATGCAT 1 cut(s) 1202
EcoT38I GRGCYC 2 cut(s) 1053, 1192
ErhI CCWWGG 3 cut(s) 48, 1431, 1477
FaeI CATG 7 cut(s) 52, 97, 240, 507, 517, 1111, 1346
FaqI GGGAC 1 cut(s) 1449
FatI CATG 7 cut(s) 48, 93, 236, 503, 513, 1107, 1342
FauNDI CATATG 1 cut(s) 1196
Fnu4HI GCNGC 1 cut(s) 1065
FokI GGATG 5 cut(s) 328, 388, 460, 1348, 1359
FriOI GRGCYC 2 cut(s) 1053, 1192
Fsp4HI GCNGC 1 cut(s) 1065
FspBI CTAG 3 cut(s) 221, 1029, 1173
GluI GCNGC 1 cut(s) 1065
GsaI CCCAGC 1 cut(s) 527
GsuI CTGGAG 3 cut(s) 324, 434, 550
HaeIII GGCC 4 cut(s) 47, 390, 921, 1482
HapII CCGG 3 cut(s) 17, 1269, 1398
HgaI GACGC 1 cut(s) 1261
Hin1I GRCGYC 1 cut(s) 1272
Hin1II CATG 7 cut(s) 52, 97, 240, 507, 517, 1111, 1346
HincII GTYRAC 1 cut(s) 945
HindII GTYRAC 1 cut(s) 945
HindIII AAGCTT 1 cut(s) 1091
HinfI GANTC 3 cut(s) 472, 599, 806
HpaII CCGG 3 cut(s) 17, 1269, 1398
HphI GGTGA 2 cut(s) 594, 759
Hpy166II GTNNAC 1 cut(s) 945
Hpy188III TCNNGA 4 cut(s) 303, 413, 488, 693
Hpy8I GTNNAC 1 cut(s) 945
Hpy99I CGWCG 1 cut(s) 1277
HpyAV CCTTC 5 cut(s) 362, 570, 699, 1187, 1222
HpyCH4III ACNGT 7 cut(s) 28, 549, 837, 984, 1072, 1155, 1456
HpyCH4IV ACGT 3 cut(s) 265, 757, 1438
HpyCH4V TGCA 8 cut(s) 503, 755, 997, 1037, 1125, 1200, 1283, 1289
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 500, 1034
HpyF3I CTNAG 8 cut(s) 106, 317, 636, 795, 939, 1141, 1158, 1255
HpySE526I ACGT 3 cut(s) 265, 757, 1438
Hsp92I GRCGYC 1 cut(s) 1272
Hsp92II CATG 7 cut(s) 52, 97, 240, 507, 517, 1111, 1346
Kzo9I GATC 3 cut(s) 348, 762, 866
LguI GCTCTTC 1 cut(s) 1421
LmnI GCTCC 5 cut(s) 227, 305, 433, 1056, 1187
Lsp1109I GCAGC 1 cut(s) 1051
LweI GCATC 6 cut(s) 114, 742, 834, 1209, 1337, 1370
MaeI CTAG 3 cut(s) 221, 1029, 1173
MaeII ACGT 3 cut(s) 265, 757, 1438
MaeIII GTNAC 1 cut(s) 1041
MalI GATC 3 cut(s) 350, 764, 868
MboI GATC 3 cut(s) 348, 762, 866
MflI RGATCY 1 cut(s) 866
MhlI GDGCHC 3 cut(s) 325, 1053, 1192
MlsI TGGCCA 1 cut(s) 47
MluNI TGGCCA 1 cut(s) 47
MlyI GAGTC 1 cut(s) 466
MmeI TCCRAC 3 cut(s) 121, 205, 1255
Mox20I TGGCCA 1 cut(s) 47
Mph1103I ATGCAT 1 cut(s) 1202
MroXI GAANNNNTTC 1 cut(s) 275
MscI TGGCCA 1 cut(s) 47
MseI TTAA 2 cut(s) 620, 713
MslI CAYNNNNRTG 2 cut(s) 446, 502
Msp20I TGGCCA 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 3 cut(s) 17, 1269, 1398
MspR9I CCNGG 7 cut(s) 17, 406, 445, 607, 923, 1047, 1399
Mva1269I GAATGC 2 cut(s) 222, 907
MvaI CCWGG 5 cut(s) 406, 445, 607, 923, 1047
MwoI GCNNNNNNNGC 3 cut(s) 44, 500, 1034
NciI CCSGG 2 cut(s) 17, 1399
NcoI CCATGG 1 cut(s) 48
NdeI CATATG 1 cut(s) 1196
NdeII GATC 3 cut(s) 348, 762, 866
NlaIII CATG 7 cut(s) 52, 97, 240, 507, 517, 1111, 1346
NlaIV GGNNCC 2 cut(s) 442, 1052
NsiI ATGCAT 1 cut(s) 1202
PaeR7I CTCGAG 1 cut(s) 488
PciSI GCTCTTC 1 cut(s) 1421
PctI GAATGC 2 cut(s) 222, 907
PdmI GAANNNNTTC 1 cut(s) 275
PfeI GAWTC 2 cut(s) 599, 806
PflFI GACNNNGTC 1 cut(s) 1083
PkrI GCNGC 1 cut(s) 1066
PleI GAGTC 1 cut(s) 466
PpsI GAGTC 1 cut(s) 466
Psp124BI GAGCTC 1 cut(s) 1192
Psp6I CCWGG 5 cut(s) 404, 443, 605, 921, 1045
PspFI CCCAGC 1 cut(s) 523
PspGI CCWGG 5 cut(s) 404, 443, 605, 921, 1045
PspN4I GGNNCC 2 cut(s) 442, 1052
PspPI GGNCC 2 cut(s) 143, 389
PsuI RGATCY 1 cut(s) 866
PsyI GACNNNGTC 1 cut(s) 1083
RsaI GTAC 5 cut(s) 233, 396, 739, 967, 1341
RsaNI GTAC 5 cut(s) 232, 395, 738, 966, 1340
RseI CAYNNNNRTG 2 cut(s) 446, 502
SacI GAGCTC 1 cut(s) 1192
SapI GCTCTTC 1 cut(s) 1421
SaqAI TTAA 2 cut(s) 620, 713
SatI GCNGC 1 cut(s) 1065
Sau3AI GATC 3 cut(s) 348, 762, 866
Sau96I GGNCC 2 cut(s) 143, 389
ScaI AGTACT 1 cut(s) 739
SchI GAGTC 1 cut(s) 466
ScrFI CCNGG 7 cut(s) 17, 406, 445, 607, 923, 1047, 1399
SduI GDGCHC 3 cut(s) 325, 1053, 1192
SfaNI GCATC 6 cut(s) 114, 742, 834, 1209, 1337, 1370
SfcI CTRYAG 1 cut(s) 1009
Sfr274I CTCGAG 1 cut(s) 488
SinI GGWCC 1 cut(s) 143
SlaI CTCGAG 1 cut(s) 488
SmiMI CAYNNNNRTG 2 cut(s) 446, 502
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
SsiI CCGC 1 cut(s) 149
SspI AATATT 1 cut(s) 649
SspMI CTAG 3 cut(s) 221, 1029, 1173
SstI GAGCTC 1 cut(s) 1192
StyD4I CCNGG 7 cut(s) 15, 404, 443, 605, 921, 1045, 1397
StyI CCWWGG 3 cut(s) 48, 1431, 1477
TaaI ACNGT 7 cut(s) 28, 549, 837, 984, 1072, 1155, 1456
TaiI ACGT 3 cut(s) 268, 760, 1441
TaqI TCGA 2 cut(s) 489, 1074
TatI WGTACW 2 cut(s) 394, 737
TfiI GAWTC 2 cut(s) 599, 806
Tru1I TTAA 2 cut(s) 620, 713
Tru9I TTAA 2 cut(s) 620, 713
TscAI CASTG 4 cut(s) 31, 205, 840, 943
TseI GCWGC 1 cut(s) 1064
TspDTI ATGAA 6 cut(s) 181, 409, 552, 795, 900, 1012
TspGWI ACGGA 1 cut(s) 276
TspRI CASTG 4 cut(s) 31, 205, 840, 943
Tth111I GACNNNGTC 1 cut(s) 1083
VpaK11BI GGWCC 1 cut(s) 143
XagI CCTNNNNNAGG 1 cut(s) 435
XapI RAATTY 1 cut(s) 69
XcmI CCANNNNNNNNNTGG 1 cut(s) 525
XhoI CTCGAG 1 cut(s) 488
XmnI GAANNNNTTC 1 cut(s) 275
XspI CTAG 3 cut(s) 221, 1029, 1173
ZrmI AGTACT 1 cut(s) 739
Zsp2I ATGCAT 1 cut(s) 1202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.