Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008542

Physical Location & Seq

Genomic Coordinates Reverse (-)

51963870 .. 51970217

Gene Structure 6348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0407400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2655 bp

ATGGCCTGCCAATGCCTTCTGGGCTCTTATTCATCTTCATCCCTACCCCCAAACCCCAACCCTAAAACCCCACCCAAATCCAGAATCCCCTCCTCCATTTCCTCCCACCTTTCACCCACTTCCGATAACGAAGAAAACGATAAAACCAACAACCCCAATTTCGATTTCCTCAAGCTCTCCGTAACTCTAACCGTCATCTCCGCCTCCCTCCCCCAAATCCCAACCTCACGCGCCGCCGTCAAGGAAAAAAAGCCACGCGCCCCCAAGAAATCCTCCGCTTCTAGAAAGTCCGAAGCTTTATCTCCCCAGGAGCTCAAATCCTGGTCCCAAGGTCTCCCCGTCGTCTCGAACCGCGTCCCCTACACTCAGCTCCTCGAATTGAACCGGGAATCGAAGCTCAAGCACGTGATTAAGCCGCCGGGGATCGAATTGCGGCAGAAGGCCGAGCCGGTCCTGGTGGTTCTCGAAGATTCCAGAGTGCTGCGCACCGTTTTGCCGTCGCCGGAGACTGACAAGAGGTTCTGGGAGGAATGGGAGAAGTTGAGTTTGGACTCTTTGTGCGTCAACGCCTACACGCCGCCGCTGAGGCCGCCGGAGGTGCCTCTGCCGTACCTGAGCTTCCTGGCGAGAATGCCGGCGGTGGTGGCGTGGTTTTCGAGGACGAGGAAGCCGGCGAGGAAGGAGAGCAAGAGGGCGGCGGAGCTGAGGCAGGCGAGGGAGGAGTTCAAGATGCAGAGGAAGGAGGAGTTGGAGAGAATGAGGAATGAGAGAGAGATGATTGATAGGGCCATGAAGGCTCAGAAGAAGGAGGAGGAGAGGAGAGTGAGGAGAGAGAGGAGGAAGAAGAAGCACGACGAGTCGTTGAGGGAGGCTCGCCGGAATTACTTGCAGATGGCCAATGTGTGGGCCAATTTGGCTCAGGATTCGAATGTGGCCACCGCGCTGGGGCTGGTGTTCTTTTACATTTTTTACAGGACTGTGGTGCTTAGTTATAGGAGGCAGAAAAAGGATTATGAGGACAGGTTGAAGATTGAGCAGGCCGAGGCCGAGGAGAGGAAGAAGATGAGGGATTTGGAGAGGATGGAGGGGATTGAGGGCGGCGAGGAGGATGAGGAAGGGGAGCAGGGGAAGGGGGAGCAGAATCCTTATATGAAGATGGCAATGCAGTTCATGAGGTCCGGGGCTCGTGTGAGACGAGCTCATAATAAGAGGATGCCTCAGTATTTGGAGAGAGGTGTGGATGTCAAGTTTTCGGATGTTGCTGGACTTGGGAAGATCAGGCTTGAGCTTGAGGAGATTGTCAAGTTCTTCACTCATGGGGAAATGTATAGGAGAAGAGGAGTTAAAATTCCAGGTGGGATACTTCTTTGTGGCCCTCCTGGGGTGGGGAAGACTTTGCTTGCAAAAGCTGTTGCTGGTGAGGCAGGCGTCAACTTCTTTTCCATTTCGGCCTCTCAATTCGTGGAGATATATGTTGGGGTTGGTGCTTCTCGTGTCCGAGCACTCTACCAGGAAGCAAAGGAAAATGCTCCATCAGTTGTCTTCATTGATGAGTTGGATGCTGTTGGAAGGGAGCGTGGTTTGATCAAGGGTTCTGGCGGACAAGAACGTGACGCAACTCTTAACCAGCTCCTGGTTTGCTTGGATGGGTTTGAAGGAAGGGGGGAAGTGATCACTATTGCTTCCACAAATAGACCAGACATTCTAGATCCAGCCCTTGTCAGACCTGGAAGGTTTGATCGGAAGATATATATCCCTAAGCCTGGTCTTATAGGCCGCATTGAAATTTTGAAGGTCCATGCGCGCAAGAAACCTATGGCTGAAGACGTGGACTATATGGCTATTGCAAGTATGAGTGATGGAATGGTTGGTGCAGAGCTAGCTAATATAGTCGAGGTTGCTGCAATCAACATGATGCGTGATGGAAGAACTGAGATTACTACTGATGACTTATTACAAGCTGCACAAATGGAAGAAAGAGGAATGCTAGATAGGAAGGACAGAAGTTTTGATACATGGAAGCAAGTAGCTATCAATGAAGCAGCGATGGCTGTTGTTGCTGCAAACTTTCCTGATCTGAAAAACATTGAGTTTGTGACAATTGCTCCTAGAGCTGGTAGGGAATTGGGTTATGTTAGAATGAAGATGGATCCTATCAACTTCAAAGAGGGAACACTAACTCGACAATCCCTACTGGATCATATTACTGTTCAACTAGCACCACGTGCAGCTGATGAACTTTGGTTTGGTGAGGGTCAGCTAAGTACAATATGGGCTGAAACAGCAGACAATGCTAGGTCAGCTGCACGGACGTATGTTCTTGGTGGCCTTTCTGAGAAGAATTATGGTCTATCTAATTTCTGGGTGGCGGATCGACTCAATGACCTCGATGTGCAGGCATTGCAGATTGTCAACATGTGTTATGAACGTGCAAAAGAGATACTGGAGCAGAACCGAAAGCTCATGGATGCTGTGGTCGATGAACTTGTTAAGAAGAAGAGTCTGACCAAACAAGATTTCTTTAACCTCGTTGAGTTACATGGTTCCCTCAAACCTGCACCACCTAGTTTACTTGACATCCGGGCTACCAAAAGAAAGCAGTTCCAGGACATGATGATGAAGCAAAAGGAATTAGTTTCAGGTAGTAACTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006855 GO:0008028 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0008519 GO:0015075 GO:0015101 GO:0015238 GO:0015318 GO:0015651 GO:0015695 GO:0015696 GO:0015697 GO:0015711 GO:0015718 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0034220 GO:0035461 GO:0042221 GO:0042493 GO:0044425 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051180 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0090416 GO:0090417 GO:0090482 GO:0098655 GO:0098656 GO:1903825 GO:1905039 GO:2001142 GO:2001143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 Sugar_tr

Protein Analysis

884

Amino Acids

100.14

Weight (kDa)

9.35

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	454 - 586	6e-43	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	609 - 652	3.9e-10	AAA+ lid domain
Peptidase_M41	PF01434	674 - 841	1.6e-11	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13050 AT3G13050 AT3G13050 AT3G13050
fragaria_vesca	FvH4_6g36460 FvH4_6g36460 FvH4_6g36460
malus_domestica	MD09G1168900.v1.1 MD17G1157900.v1.1
prunus_persica	Prupe.3G027200_v2.0.a1 Prupe.3G027200_v2.0.a1
pyrus_communis	pycom09g08650
rosa_chinensis	RchiOBHm_Chr2g0148591
rosa_laevigata	RLG00000020353
rosa_roxburghii	Rroxscaffold_2G00098610
rosa_rugosa	Rorug02G0407400 Rorug02G0407500 Rorug02G0407600
rosa_samantha	Rh2AG466300 Rh2BG479400 Rh2CG452800 Rh2DG488200
rosa_wichuraiana	Rw2G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	485
Acc36I	ACCTGC	1 cut(s)	2563
AccB1I	GGYRCC	1 cut(s)	598
AccB7I	CCANNNNNTGG	2 cut(s)	903, 1633
AccII	CGCG	5 cut(s)	231, 258, 354, 941, 1804
AclWI	GGATC	6 cut(s)	431, 1703, 2144, 2157, 2205, 2379
AcoI	YGGCCR	2 cut(s)	894, 933
AcsI	RAATTY	2 cut(s)	1347, 1785
AcuI	CTGAAG	1 cut(s)	1842
AcvI	CACGTG	2 cut(s)	406, 2225
AcyI	GRCGYC	1 cut(s)	1428
AdeI	CACNNNGTG	1 cut(s)	2225
AfaI	GTAC	2 cut(s)	611, 2266
AfiI	CCNNNNNNNGG	8 cut(s)	903, 945, 1053, 1381, 1385, 1633, 1763, 2114
AflIII	ACRYGT	1 cut(s)	2415
AgsI	TTSAA	8 cut(s)	382, 727, 1027, 1655, 1784, 1792, 2164, 2213
AjiI	CACGTC	1 cut(s)	1828
Alw21I	GWGCWC	3 cut(s)	315, 1201, 1504
Alw26I	GTCTC	4 cut(s)	338, 349, 500, 1186
AlwI	GGATC	6 cut(s)	431, 1703, 2144, 2157, 2205, 2379
AlwNI	CAGNNNCTG	1 cut(s)	1633
ApeKI	GCWGC	7 cut(s)	481, 1901, 1961, 2042, 2060, 2228, 2303
ApoI	RAATTY	2 cut(s)	1347, 1785
ArsI	GACNNNNNNTTYG	2 cut(s)	1991, 2023
AspLEI	GCGC	6 cut(s)	233, 260, 486, 943, 1804, 1806
AspS9I	GGNCC	7 cut(s)	324, 451, 786, 906, 1176, 1373, 1795
AsuC2I	CCSGG	4 cut(s)	386, 420, 1180, 2582
AsuHPI	GGTGA	3 cut(s)	105, 1430, 2261
AsuII	TTCGAA	1 cut(s)	926
AsuNHI	GCTAGC	1 cut(s)	1879
AvaII	GGWCC	4 cut(s)	324, 451, 1176, 1795
BalI	TGGCCA	2 cut(s)	896, 935
BamHI	GGATCC	1 cut(s)	2149
BanI	GGYRCC	1 cut(s)	598
BanII	GRGCYC	4 cut(s)	26, 315, 1186, 1201
BarI	GAAGNNNNNNTAC	4 cut(s)	602, 634, 1996, 2028
BauI	CACGAG	2 cut(s)	1185, 1491
BbrPI	CACGTG	2 cut(s)	406, 2225
BbsI	GAAGAC	3 cut(s)	1397, 1534, 1830
Bbv12I	GWGCWC	3 cut(s)	315, 1201, 1504
BbvCI	CCTCAGC	2 cut(s)	584, 704
BbvI	GCAGC	7 cut(s)	468, 1888, 1948, 2047, 2054, 2240, 2290
BccI	CCATC	9 cut(s)	886, 1075, 1150, 1540, 1640, 1853, 1916, 2041, 2140
BceAI	ACGGC	3 cut(s)	221, 481, 592
BcgI	CGANNNNNNTGC	2 cut(s)	1883, 1917
BciVI	GTATCC	1 cut(s)	1353
BclI	TGATCA	2 cut(s)	1584, 1671
BcnI	CCSGG	4 cut(s)	386, 420, 1180, 2582
BcoDI	GTCTC	4 cut(s)	338, 349, 500, 1186
BfaI	CTAG	8 cut(s)	282, 1706, 1880, 1988, 2109, 2216, 2295, 2565
BfuAI	ACCTGC	1 cut(s)	2563
BfuI	GTATCC	1 cut(s)	1353
BglI	GCCNNNNNGGC	4 cut(s)	21, 586, 794, 914
Bme18I	GGWCC	4 cut(s)	324, 451, 1176, 1795
BmgBI	CACGTC	1 cut(s)	1828
BmgT120I	GGNCC	7 cut(s)	324, 451, 786, 906, 1176, 1373, 1795
BmiI	GGNNCC	4 cut(s)	326, 600, 2151, 2545
BmsI	GCATC	5 cut(s)	720, 1203, 1549, 1905, 2458
BmtI	GCTAGC	1 cut(s)	1883
BpiI	GAAGAC	3 cut(s)	1397, 1534, 1830
BplI	GAGNNNNNCTC	6 cut(s)	856, 888, 1183, 1215, 1201, 1233
BpmI	CTGGAG	1 cut(s)	2465
Bpu10I	CCTNAGC	5 cut(s)	584, 614, 704, 918, 1758
Bpu14I	TTCGAA	1 cut(s)	926
BpuEI	CTTGAG	4 cut(s)	155, 383, 1304, 1310
BpuMI	CCSGG	4 cut(s)	386, 420, 1180, 2582
BsaAI	YACGTR	2 cut(s)	406, 2225
BsaBI	GATNNNNATC	1 cut(s)	1751
BsaHI	GRCGYC	1 cut(s)	1428
BsaI	GGTCTC	1 cut(s)	338
BsaJI	CCNNGG	7 cut(s)	306, 328, 419, 1041, 1047, 1179, 1379
BsaXI	ACNNNNNCTCC	2 cut(s)	2089, 2119
Bsc4I	CCNNNNNNNGG	8 cut(s)	903, 945, 1053, 1381, 1385, 1633, 1763, 2114
Bse118I	RCCGGY	3 cut(s)	448, 634, 670
Bse1I	ACTGG	2 cut(s)	2199, 2448
Bse3DI	GCAATG	2 cut(s)	1167, 2399
Bse8I	GATNNNNATC	1 cut(s)	1751
BseDI	CCNNGG	7 cut(s)	306, 328, 419, 1041, 1047, 1179, 1379
BseJI	GATNNNNATC	1 cut(s)	1751
BseLI	CCNNNNNNNGG	8 cut(s)	903, 945, 1053, 1381, 1385, 1633, 1763, 2114
BseMI	GCAATG	2 cut(s)	1167, 2399
BseMII	CTCAG	9 cut(s)	380, 575, 605, 695, 812, 932, 1232, 1923, 2325
BseNI	ACTGG	2 cut(s)	2199, 2448
BsePI	GCGCGC	1 cut(s)	1802
BseXI	GCAGC	7 cut(s)	468, 1888, 1948, 2047, 2054, 2240, 2290
BseYI	CCCAGC	1 cut(s)	943
BsgI	GTGCAG	6 cut(s)	1893, 1947, 2247, 2289, 2414, 2541
Bsh1236I	CGCG	5 cut(s)	231, 258, 354, 941, 1804
BshNI	GGYRCC	1 cut(s)	598
BsiHKAI	GWGCWC	3 cut(s)	315, 1201, 1504
BslFI	GGGAC	2 cut(s)	310, 341
BslI	CCNNNNNNNGG	8 cut(s)	903, 945, 1053, 1381, 1385, 1633, 1763, 2114
BsmAI	GTCTC	4 cut(s)	338, 349, 500, 1186
BsmBI	CGTCTC	2 cut(s)	349, 1186
BsmFI	GGGAC	2 cut(s)	310, 341
BsmI	GAATGC	2 cut(s)	636, 1989
Bso31I	GGTCTC	1 cut(s)	338
Bsp119I	TTCGAA	1 cut(s)	926
Bsp1286I	GDGCHC	5 cut(s)	26, 315, 1186, 1201, 1504
BspCNI	CTCAG	9 cut(s)	379, 576, 606, 696, 811, 931, 1231, 1924, 2326
BspFNI	CGCG	5 cut(s)	231, 258, 354, 941, 1804
BspHI	TCATGA	1 cut(s)	1170
BspLI	GGNNCC	4 cut(s)	326, 600, 2151, 2545
BspMI	ACCTGC	1 cut(s)	2563
BspOI	GCTAGC	1 cut(s)	1883
BspPI	GGATC	6 cut(s)	431, 1703, 2144, 2157, 2205, 2379
BspT104I	TTCGAA	1 cut(s)	926
BspT107I	GGYRCC	1 cut(s)	598
BspTNI	GGTCTC	1 cut(s)	338
BsrDI	GCAATG	2 cut(s)	1167, 2399
BsrFI	RCCGGY	3 cut(s)	448, 634, 670
BsrI	ACTGG	2 cut(s)	2199, 2448
BssAI	RCCGGY	3 cut(s)	448, 634, 670
BssECI	CCNNGG	7 cut(s)	306, 328, 419, 1041, 1047, 1179, 1379
BssHII	GCGCGC	1 cut(s)	1802
BssNI	GRCGYC	1 cut(s)	1428
BssSI	CACGAG	2 cut(s)	1185, 1491
BssT1I	CCWWGG	1 cut(s)	328
Bst2BI	CACGAG	2 cut(s)	1185, 1491
Bst4CI	ACNGT	4 cut(s)	193, 490, 979, 2209
Bst6I	CTCTTC	2 cut(s)	1330, 2492
BstACI	GRCGYC	1 cut(s)	1428
BstAPI	GCANNNNNTGC	3 cut(s)	2225, 2291, 2401
BstBAI	YACGTR	2 cut(s)	406, 2225
BstBI	TTCGAA	1 cut(s)	926
BstFNI	CGCG	5 cut(s)	231, 258, 354, 941, 1804
BstHHI	GCGC	6 cut(s)	233, 260, 486, 943, 1804, 1806
BstMAI	GTCTC	4 cut(s)	338, 349, 500, 1186
BstNSI	RCATGY	1 cut(s)	2419
BstUI	CGCG	5 cut(s)	231, 258, 354, 941, 1804
BstV1I	GCAGC	7 cut(s)	468, 1888, 1948, 2047, 2054, 2240, 2290
BstV2I	GAAGAC	3 cut(s)	1397, 1534, 1830
BstX2I	RGATCY	2 cut(s)	1708, 2149
BstXI	CCANNNNNNTGG	1 cut(s)	943
BstYI	RGATCY	2 cut(s)	1708, 2149
BsuI	GTATCC	1 cut(s)	1353
BtgZI	GCGATG	1 cut(s)	2060
BtrI	CACGTC	1 cut(s)	1828
BveI	ACCTGC	1 cut(s)	2563
CaiI	CAGNNNCTG	1 cut(s)	1633
CciI	TCATGA	1 cut(s)	1170
CfoI	GCGC	6 cut(s)	233, 260, 486, 943, 1804, 1806
Cfr10I	RCCGGY	3 cut(s)	448, 634, 670
Cfr13I	GGNCC	7 cut(s)	324, 451, 786, 906, 1176, 1373, 1795
CseI	GACGC	4 cut(s)	343, 550, 1417, 1622
Csp6I	GTAC	2 cut(s)	610, 2265
CviQI	GTAC	2 cut(s)	610, 2265
DraIII	CACNNNGTG	1 cut(s)	2225
EaeI	YGGCCR	2 cut(s)	894, 933
Eam1104I	CTCTTC	2 cut(s)	1330, 2492
EarI	CTCTTC	2 cut(s)	1330, 2492
EciI	GGCGGA	4 cut(s)	190, 713, 1614, 2384
Ecl136II	GAGCTC	2 cut(s)	313, 1199
Eco130I	CCWWGG	1 cut(s)	328
Eco24I	GRGCYC	4 cut(s)	26, 315, 1186, 1201
Eco31I	GGTCTC	1 cut(s)	338
Eco47I	GGWCC	4 cut(s)	324, 451, 1176, 1795
Eco53kI	GAGCTC	2 cut(s)	313, 1199
Eco57I	CTGAAG	1 cut(s)	1842
Eco72I	CACGTG	2 cut(s)	406, 2225
EcoICRI	GAGCTC	2 cut(s)	313, 1199
EcoT14I	CCWWGG	1 cut(s)	328
EcoT38I	GRGCYC	4 cut(s)	26, 315, 1186, 1201
ErhI	CCWWGG	1 cut(s)	328
Esp3I	CGTCTC	2 cut(s)	349, 1186
FaqI	GGGAC	2 cut(s)	310, 341
FbaI	TGATCA	2 cut(s)	1584, 1671
FriOI	GRGCYC	4 cut(s)	26, 315, 1186, 1201
FspBI	CTAG	8 cut(s)	282, 1706, 1880, 1988, 2109, 2216, 2295, 2565
FspI	TGCGCA	1 cut(s)	485
GlaI	GCGC	6 cut(s)	232, 259, 485, 942, 1803, 1805
GsaI	CCCAGC	1 cut(s)	947
GsuI	CTGGAG	1 cut(s)	2465
HgaI	GACGC	4 cut(s)	343, 550, 1417, 1622
HhaI	GCGC	6 cut(s)	233, 260, 486, 943, 1804, 1806
Hin1I	GRCGYC	1 cut(s)	1428
Hin6I	GCGC	6 cut(s)	231, 258, 484, 941, 1802, 1804
HinP1I	GCGC	6 cut(s)	231, 258, 484, 941, 1802, 1804
HincII	GTYRAC	3 cut(s)	565, 1432, 2413
HindII	GTYRAC	3 cut(s)	565, 1432, 2413
HindIII	AAGCTT	1 cut(s)	294
HinfI	GANTC	9 cut(s)	84, 389, 470, 551, 857, 923, 1141, 2376, 2500
HphI	GGTGA	3 cut(s)	105, 1430, 2261
Hpy166II	GTNNAC	5 cut(s)	565, 1432, 1831, 2413, 2570
Hpy8I	GTNNAC	5 cut(s)	565, 1432, 1831, 2413, 2570
Hpy99I	CGWCG	3 cut(s)	344, 502, 857
HpyCH4III	ACNGT	4 cut(s)	193, 490, 979, 2209
HpyCH4IV	ACGT	6 cut(s)	405, 1609, 1827, 2224, 2312, 2428
HpySE526I	ACGT	6 cut(s)	405, 1609, 1827, 2224, 2312, 2428
Hsp92I	GRCGYC	1 cut(s)	1428
HspAI	GCGC	6 cut(s)	231, 258, 484, 941, 1802, 1804
KroI	GCCGGC	2 cut(s)	634, 670
KroNI	GCCGGC	2 cut(s)	636, 672
Ksp22I	TGATCA	2 cut(s)	1584, 1671
Lsp1109I	GCAGC	7 cut(s)	468, 1888, 1948, 2047, 2054, 2240, 2290
LweI	GCATC	5 cut(s)	720, 1203, 1549, 1905, 2458
MaeI	CTAG	8 cut(s)	282, 1706, 1880, 1988, 2109, 2216, 2295, 2565
MaeII	ACGT	6 cut(s)	405, 1609, 1827, 2224, 2312, 2428
MaeIII	GTNAC	5 cut(s)	181, 1610, 2095, 2535, 2645
MfeI	CAATTG	1 cut(s)	2100
MflI	RGATCY	2 cut(s)	1708, 2149
MhlI	GDGCHC	5 cut(s)	26, 315, 1186, 1201, 1504
MlsI	TGGCCA	2 cut(s)	896, 935
MluNI	TGGCCA	2 cut(s)	896, 935
MlyI	GAGTC	4 cut(s)	545, 866, 2370, 2509
MmeI	TCCRAC	3 cut(s)	729, 1536, 1546
Mox20I	TGGCCA	2 cut(s)	896, 935
MroNI	GCCGGC	2 cut(s)	634, 670
MscI	TGGCCA	2 cut(s)	896, 935
MseI	TTAA	5 cut(s)	411, 1344, 1623, 2490, 2523
MslI	CAYNNNNRTG	1 cut(s)	2615
Msp20I	TGGCCA	2 cut(s)	896, 935
MspA1I	CMGCKG	3 cut(s)	583, 2231, 2303
MunI	CAATTG	1 cut(s)	2100
Mva1269I	GAATGC	2 cut(s)	636, 1989
MvnI	CGCG	5 cut(s)	231, 258, 354, 941, 1804
NaeI	GCCGGC	2 cut(s)	636, 672
NciI	CCSGG	4 cut(s)	386, 420, 1180, 2582
NgoMIV	GCCGGC	2 cut(s)	634, 670
NheI	GCTAGC	1 cut(s)	1879
NlaIV	GGNNCC	4 cut(s)	326, 600, 2151, 2545
NmeAIII	GCCGAG	3 cut(s)	469, 1066, 1072
NmuCI	GTSAC	2 cut(s)	1610, 2095
NsbI	TGCGCA	1 cut(s)	485
NspI	RCATGY	1 cut(s)	2419
NspV	TTCGAA	1 cut(s)	926
PagI	TCATGA	1 cut(s)	1170
PauI	GCGCGC	1 cut(s)	1802
PciI	ACATGT	1 cut(s)	2415
PcsI	WCGNNNNNNNCGW	2 cut(s)	135, 1192
PctI	GAATGC	2 cut(s)	636, 1989
PdiI	GCCGGC	2 cut(s)	636, 672
PfeI	GAWTC	5 cut(s)	84, 389, 470, 923, 1141
PflMI	CCANNNNNTGG	2 cut(s)	903, 1633
PfoI	TCCNGGA	1 cut(s)	2604
PleI	GAGTC	4 cut(s)	545, 865, 2370, 2508
PmaCI	CACGTG	2 cut(s)	406, 2225
PmlI	CACGTG	2 cut(s)	406, 2225
PpsI	GAGTC	4 cut(s)	545, 865, 2370, 2508
Ppu21I	YACGTR	2 cut(s)	406, 2225
PscI	ACATGT	1 cut(s)	2415
Psp124BI	GAGCTC	2 cut(s)	315, 1201
PspCI	CACGTG	2 cut(s)	406, 2225
PspFI	CCCAGC	1 cut(s)	943
PspN4I	GGNNCC	4 cut(s)	326, 600, 2151, 2545
PspPI	GGNCC	7 cut(s)	324, 451, 786, 906, 1176, 1373, 1795
PsrI	GAACNNNNNNTAC	2 cut(s)	1921, 1953
PstNI	CAGNNNCTG	1 cut(s)	1633
PsuI	RGATCY	2 cut(s)	1708, 2149
PteI	GCGCGC	1 cut(s)	1802
PvuII	CAGCTG	2 cut(s)	2231, 2303
RsaI	GTAC	2 cut(s)	611, 2266
RsaNI	GTAC	2 cut(s)	610, 2265
RseI	CAYNNNNRTG	1 cut(s)	2615
SacI	GAGCTC	2 cut(s)	315, 1201
SaqAI	TTAA	5 cut(s)	411, 1344, 1623, 2490, 2523
Sau96I	GGNCC	7 cut(s)	324, 451, 786, 906, 1176, 1373, 1795
SchI	GAGTC	4 cut(s)	545, 866, 2370, 2509
SduI	GDGCHC	5 cut(s)	26, 315, 1186, 1201, 1504
SfaNI	GCATC	5 cut(s)	720, 1203, 1549, 1905, 2458
SfuI	TTCGAA	1 cut(s)	926
SinI	GGWCC	4 cut(s)	324, 451, 1176, 1795
SmiMI	CAYNNNNRTG	1 cut(s)	2615
SmlI	CTYRAG	4 cut(s)	170, 398, 1283, 1289
SmoI	CTYRAG	4 cut(s)	170, 398, 1283, 1289
SspMI	CTAG	8 cut(s)	282, 1706, 1880, 1988, 2109, 2216, 2295, 2565
SstI	GAGCTC	2 cut(s)	315, 1201
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	4 cut(s)	193, 490, 979, 2209
TaiI	ACGT	6 cut(s)	408, 1612, 1830, 2227, 2315, 2431
TatI	WGTACW	1 cut(s)	2264
TauI	GCSGC	9 cut(s)	236, 418, 436, 580, 583, 592, 698, 1101, 1779
TfiI	GAWTC	5 cut(s)	84, 389, 470, 923, 1141
Tru1I	TTAA	5 cut(s)	411, 1344, 1623, 2490, 2523
Tru9I	TTAA	5 cut(s)	411, 1344, 1623, 2490, 2523
TseFI	GTSAC	2 cut(s)	1610, 2095
TseI	GCWGC	7 cut(s)	481, 1901, 1961, 2042, 2060, 2228, 2303
Tsp45I	GTSAC	2 cut(s)	1610, 2095
TspGWI	ACGGA	2 cut(s)	169, 2323
Van91I	CCANNNNNTGG	2 cut(s)	903, 1633
VpaK11BI	GGWCC	4 cut(s)	324, 451, 1176, 1795
XapI	RAATTY	2 cut(s)	1347, 1785
XbaI	TCTAGA	2 cut(s)	281, 1705
XceI	RCATGY	1 cut(s)	2419
XspI	CTAG	8 cut(s)	282, 1706, 1880, 1988, 2109, 2216, 2295, 2565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.