MD09G1168900.v1.1

Organic cation carnitine transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
13976667 .. 13980443
3777 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1168900.v1.1.491

Sequence Viewer

Length: 1434 bp
ATGGGGTTTGGAAAGTTCCAAATTCTTGTGCTTGCATATGCCGGCATGGGTTGGGTCTCAGAAGCCATGGAGATGATGCTACTCTCTTTTGTTGGACCAGCGGTTCAGTCTGCTTGGGGTCTTTCGTCTGAACAAGAAAGTTTAATAACCAGTGTGGTTTTTGTTGGAACGCTAGTCGGAGCTTACTCGTGGGGCATAGTTTCTGACAAATATGGACGTAGGAAAGGATTCCTCATTACAGCCATAGTTACTTCTGGAGCTGGTTTTCTGAGTGCTCTTTCCCCCAATTATACATCCTTGCTCGTCCTTCGTTGCATAGTTGGTGTTGGTTTGGGAGGTGGCCCTGTACTCTCATCCTGGTTTCTGGAGTTCATTCCTGCTCCTAACAGAGGTACCTGGATGGTTATTTTTTCAGCTTTTTGGACTGTTGGAACAATTCTTGAGGCTTCACTTGCGTGGCTTGTCATGCCAAACTTTGGTTGGAGGTGGCTACTTGCCTTGTCTTCACTCCCTTCATCGCTTCTCCTCATATTCTATTGGGTTGCACCTGAATCACCGAGATATTTGTGCTTAAAAGGTAGAACAACTGAGGCAATCAATATTTTGGAGAAAGTAGCAAGAATGAATGGAACGAAACTCCCTTCGGGGAATCTTGTTTCTGATTTGAAAATTGAGTTACCTGAAAATAGTACTCCATCAGAAGCTACGCGTTTGATCTCACCGACAGATAAAGAAGATCCAACTCCTAAGGAGATGGATTCTAATGTGGGGGGCATCTCTTCACTGTTAACGCTTCTTTCCCCAAAATTAATCAGATCAACCCTGCTCTTATGGGTAGTATTCTTTGGGAATGCTTTTTCATATTACGGCCTGGTGCTTCTGACAACTGAGTTGAGCAGCAGACACAGTACATGTACACCGGGTCCAATACAGTCGGATAAAGCGATGGATACTAGCTATAGAGATGTTTTCATCACTAGTATTGCAGAGTTCCCTGGGCTCCTCATATCTGCTGCTACGGTCGATAAACTGGGTCGTAAGCTTTCAATGTCATCCATGTTCTTCCTATGCTGCATTTTTCTACTCCCCTTGGTAGTCCATCAGTCTCAGGGCTTGACCACTATCCTTCTGTTTGGAGCTCGCATATGCATCACAGGGTCCTTCACGATAATCTACATATATGCCCCAGAGATATACCCAACCTCAGTCCGAACAACTGGTGTTGGAATCGCAAGTGCAATGGGAAGAATAGGTGGAATGTTATGCCCTCTTGTGGCAGTAGGTTTGGTGCATGGATGCCATCAAACAGCTTCCATTCTGCTGTTTGAGATTATAATTTTTCTTTCGGGGATATGCGTGTTGCTCTTCCCGTTTGAAACCAAGGGCCTTGAATTGAGCGATACTATATCGGATTCAAAGACTCAAAGGCAGTAA

Protein Analysis

478

Amino Acids

51.71

Weight (kDa)

7.51

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 20 - 295 1.3e-26 Major Facilitator Superfamily
Sugar_tr PF00083 42 - 466 7.8e-44 Sugar (and other) transporter
MFS_1 PF07690 325 - 460 1.4e-11 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1334
Acc65I GGTACC 1 cut(s) 392
AccB1I GGYRCC 1 cut(s) 392
AccB7I CCANNNNNTGG 1 cut(s) 476
AccII CGCG 1 cut(s) 709
AciI CCGC 1 cut(s) 101
AclWI GGATC 1 cut(s) 731
AcsI RAATTY 1 cut(s) 21
AfaI GTAC 5 cut(s) 348, 394, 691, 910, 916
AfiI CCNNNNNNNGG 3 cut(s) 389, 476, 1273
AflIII ACRYGT 2 cut(s) 707, 911
AgsI TTSAA 5 cut(s) 667, 1047, 1376, 1391, 1416
AhlI ACTAGT 1 cut(s) 977
AjnI CCWGG 4 cut(s) 356, 395, 870, 994
AleI CACNNNNGTG 1 cut(s) 454
AloI GAACNNNNNNTCC 2 cut(s) 87, 119
AluBI AGCT 8 cut(s) 182, 260, 416, 704, 957, 1042, 1139, 1310
AluI AGCT 8 cut(s) 182, 260, 416, 704, 957, 1042, 1139, 1310
Alw21I GWGCWC 2 cut(s) 277, 1141
Alw26I GTCTC 2 cut(s) 61, 1110
AlwI GGATC 1 cut(s) 731
AoxI GGCC 3 cut(s) 340, 868, 1384
ApeKI GCWGC 3 cut(s) 897, 1013, 1071
ApoI RAATTY 1 cut(s) 21
AseI ATTAAT 1 cut(s) 809
Asp700I GAANNNNTTC 1 cut(s) 227
Asp718I GGTACC 1 cut(s) 392
AspS9I GGNCC 5 cut(s) 95, 341, 923, 1158, 1384
AsuC2I CCSGG 1 cut(s) 921
AsuHPI GGTGA 2 cut(s) 546, 711
AvaII GGWCC 3 cut(s) 95, 923, 1158
AxyI CCTNAGG 1 cut(s) 747
BaeI ACNNNNGTAYC 2 cut(s) 376, 409
BanI GGYRCC 1 cut(s) 392
BanII GRGCYC 2 cut(s) 1002, 1141
BauI CACGAG 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 495
Bbv12I GWGCWC 2 cut(s) 277, 1141
BbvI GCAGC 3 cut(s) 909, 1000, 1058
BccI CCATC 6 cut(s) 394, 703, 748, 940, 1107, 1308
BceAI ACGGC 1 cut(s) 883
BciT130I CCWGG 4 cut(s) 358, 397, 872, 996
BciVI GTATCC 1 cut(s) 943
BcnI CCSGG 1 cut(s) 921
BcoDI GTCTC 2 cut(s) 61, 1110
BcuI ACTAGT 1 cut(s) 977
BfaI CTAG 3 cut(s) 173, 954, 978
BfmI CTRYAG 1 cut(s) 958
BfuI GTATCC 1 cut(s) 943
BisI GCNGC 3 cut(s) 898, 1014, 1072
BlsI GCNGC 3 cut(s) 899, 1015, 1073
BmcAI AGTACT 1 cut(s) 691
Bme1390I CCNGG 5 cut(s) 358, 397, 872, 921, 996
Bme18I GGWCC 3 cut(s) 95, 923, 1158
BmgT120I GGNCC 5 cut(s) 95, 341, 923, 1158, 1384
BmiI GGNNCC 4 cut(s) 394, 924, 1001, 1159
BmrFI CCNGG 5 cut(s) 358, 397, 872, 921, 996
BmrI ACTGGG 1 cut(s) 1040
BmsI GCATC 4 cut(s) 66, 783, 1158, 1286
BmuI ACTGGG 1 cut(s) 1040
BpiI GAAGAC 1 cut(s) 495
BpmI CTGGAG 2 cut(s) 276, 386
BpuEI CTTGAG 1 cut(s) 461
BpuMI CCSGG 1 cut(s) 921
BsaI GGTCTC 1 cut(s) 61
BsaJI CCNNGG 5 cut(s) 66, 994, 995, 1089, 1380
Bsc4I CCNNNNNNNGG 3 cut(s) 389, 476, 1273
Bse118I RCCGGY 1 cut(s) 41
Bse1I ACTGG 3 cut(s) 150, 1035, 1222
Bse21I CCTNAGG 1 cut(s) 747
Bse3DI GCAATG 1 cut(s) 1245
BseBI CCWGG 4 cut(s) 358, 397, 872, 996
BseDI CCNNGG 5 cut(s) 66, 994, 995, 1089, 1380
BseGI GGATG 5 cut(s) 293, 353, 405, 1052, 1301
BseLI CCNNNNNNNGG 3 cut(s) 389, 476, 1273
BseMI GCAATG 1 cut(s) 1245
BseMII CTCAG 6 cut(s) 72, 260, 579, 879, 1121, 1218
BseNI ACTGG 3 cut(s) 150, 1035, 1222
BseRI GAGGAG 2 cut(s) 515, 992
BseXI GCAGC 3 cut(s) 909, 1000, 1058
Bsh1236I CGCG 1 cut(s) 709
Bsh1285I CGRYCG 1 cut(s) 1023
BshFI GGCC 3 cut(s) 342, 870, 1386
BshNI GGYRCC 1 cut(s) 392
BsiEI CGRYCG 1 cut(s) 1023
BsiHKAI GWGCWC 2 cut(s) 277, 1141
BsiSI CCGG 2 cut(s) 42, 920
BslI CCNNNNNNNGG 3 cut(s) 389, 476, 1273
BsmAI GTCTC 2 cut(s) 61, 1110
BsmI GAATGC 1 cut(s) 856
BsnI GGCC 3 cut(s) 342, 870, 1386
Bso31I GGTCTC 1 cut(s) 61
Bsp1286I GDGCHC 3 cut(s) 277, 1002, 1141
Bsp1407I TGTACA 1 cut(s) 914
Bsp143I GATC 3 cut(s) 714, 736, 815
Bsp19I CCATGG 1 cut(s) 66
BspACI CCGC 1 cut(s) 101
BspANI GGCC 3 cut(s) 342, 870, 1386
BspCNI CTCAG 6 cut(s) 71, 261, 580, 880, 1120, 1217
BspFNI CGCG 1 cut(s) 709
BspLI GGNNCC 4 cut(s) 394, 924, 1001, 1159
BspPI GGATC 1 cut(s) 731
BspQI GCTCTTC 1 cut(s) 1370
BspT107I GGYRCC 1 cut(s) 392
BspTNI GGTCTC 1 cut(s) 61
BsrDI GCAATG 1 cut(s) 1245
BsrFI RCCGGY 1 cut(s) 41
BsrGI TGTACA 1 cut(s) 914
BsrI ACTGG 3 cut(s) 150, 1035, 1222
BssAI RCCGGY 1 cut(s) 41
BssECI CCNNGG 5 cut(s) 66, 994, 995, 1089, 1380
BssMI GATC 3 cut(s) 714, 736, 815
BssSI CACGAG 1 cut(s) 187
BssT1I CCWWGG 3 cut(s) 66, 1089, 1380
Bst2BI CACGAG 1 cut(s) 187
Bst2UI CCWGG 4 cut(s) 358, 397, 872, 996
Bst4CI ACNGT 5 cut(s) 427, 786, 908, 933, 1021
Bst6I CTCTTC 2 cut(s) 784, 1370
BstAUI TGTACA 1 cut(s) 914
BstC8I GCNNGC 3 cut(s) 33, 43, 1141
BstDEI CTNAG 7 cut(s) 58, 269, 588, 747, 888, 1107, 1204
BstDSI CCRYGG 1 cut(s) 66
BstENI CCTNNNNNAGG 1 cut(s) 387
BstF5I GGATG 5 cut(s) 293, 353, 405, 1052, 1301
BstFNI CGCG 1 cut(s) 709
BstKTI GATC 3 cut(s) 717, 739, 818
BstMAI GTCTC 2 cut(s) 61, 1110
BstMBI GATC 3 cut(s) 714, 736, 815
BstMCI CGRYCG 1 cut(s) 1023
BstMWI GCNNNNNNNGC 2 cut(s) 452, 466
BstNI CCWGG 4 cut(s) 358, 397, 872, 996
BstNSI RCATGY 1 cut(s) 915
BstSCI CCNGG 5 cut(s) 356, 395, 870, 919, 994
BstSFI CTRYAG 1 cut(s) 958
BstUI CGCG 1 cut(s) 709
BstV1I GCAGC 3 cut(s) 909, 1000, 1058
BstV2I GAAGAC 1 cut(s) 495
BstX2I RGATCY 1 cut(s) 736
BstYI RGATCY 1 cut(s) 736
Bsu36I CCTNAGG 1 cut(s) 747
BsuI GTATCC 1 cut(s) 943
BsuRI GGCC 3 cut(s) 342, 870, 1386
BtgI CCRYGG 1 cut(s) 66
BtgZI GCGATG 2 cut(s) 501, 959
BtsCI GGATG 5 cut(s) 293, 353, 405, 1052, 1301
BtsIMutI CAGTG 2 cut(s) 157, 782
Cac8I GCNNGC 3 cut(s) 33, 43, 1141
Cfr10I RCCGGY 1 cut(s) 41
Cfr13I GGNCC 5 cut(s) 95, 341, 923, 1158, 1384
Csp6I GTAC 5 cut(s) 347, 393, 690, 909, 915
CviAII CATG 6 cut(s) 46, 67, 466, 912, 1057, 1292
CviQI GTAC 5 cut(s) 347, 393, 690, 909, 915
DdeI CTNAG 7 cut(s) 58, 269, 588, 747, 888, 1107, 1204
DpnI GATC 3 cut(s) 716, 738, 817
DpnII GATC 3 cut(s) 714, 736, 815
Eam1104I CTCTTC 2 cut(s) 784, 1370
EarI CTCTTC 2 cut(s) 784, 1370
Ecl136II GAGCTC 1 cut(s) 1139
Eco130I CCWWGG 3 cut(s) 66, 1089, 1380
Eco24I GRGCYC 2 cut(s) 1002, 1141
Eco31I GGTCTC 1 cut(s) 61
Eco47I GGWCC 3 cut(s) 95, 923, 1158
Eco53kI GAGCTC 1 cut(s) 1139
Eco81I CCTNAGG 1 cut(s) 747
EcoICRI GAGCTC 1 cut(s) 1139
EcoNI CCTNNNNNAGG 1 cut(s) 387
EcoO109I RGGNCCY 2 cut(s) 1158, 1384
EcoRII CCWGG 4 cut(s) 356, 395, 870, 994
EcoT14I CCWWGG 3 cut(s) 66, 1089, 1380
EcoT22I ATGCAT 1 cut(s) 1151
EcoT38I GRGCYC 2 cut(s) 1002, 1141
ErhI CCWWGG 3 cut(s) 66, 1089, 1380
FaeI CATG 6 cut(s) 49, 70, 469, 915, 1060, 1295
FatI CATG 6 cut(s) 45, 66, 465, 911, 1056, 1291
FauNDI CATATG 2 cut(s) 37, 1145
Fnu4HI GCNGC 3 cut(s) 898, 1014, 1072
FokI GGATG 5 cut(s) 280, 340, 412, 1039, 1308
FriOI GRGCYC 2 cut(s) 1002, 1141
Fsp4HI GCNGC 3 cut(s) 898, 1014, 1072
FspBI CTAG 3 cut(s) 173, 954, 978
GluI GCNGC 3 cut(s) 898, 1014, 1072
GsuI CTGGAG 2 cut(s) 276, 386
HaeIII GGCC 3 cut(s) 342, 870, 1386
HapII CCGG 2 cut(s) 42, 920
Hin1II CATG 6 cut(s) 49, 70, 469, 915, 1060, 1295
HincII GTYRAC 1 cut(s) 789
HindII GTYRAC 1 cut(s) 789
HindIII AAGCTT 1 cut(s) 1040
HinfI GANTC 7 cut(s) 228, 551, 649, 758, 1227, 1412, 1420
HpaI GTTAAC 1 cut(s) 789
HpaII CCGG 2 cut(s) 42, 920
HphI GGTGA 2 cut(s) 546, 711
Hpy166II GTNNAC 2 cut(s) 789, 917
Hpy188III TCNNGA 4 cut(s) 255, 365, 440, 1165
Hpy8I GTNNAC 2 cut(s) 789, 917
HpyAV CCTTC 5 cut(s) 317, 522, 651, 1136, 1171
HpyCH4III ACNGT 5 cut(s) 427, 786, 908, 933, 1021
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 8 cut(s) 35, 315, 545, 986, 1074, 1149, 1238, 1291
HpyF10VI GCNNNNNNNGC 2 cut(s) 452, 466
HpyF3I CTNAG 7 cut(s) 58, 269, 588, 747, 888, 1107, 1204
HpySE526I ACGT 1 cut(s) 217
Hsp92II CATG 6 cut(s) 49, 70, 469, 915, 1060, 1295
KpnI GGTACC 1 cut(s) 396
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
KspAI GTTAAC 1 cut(s) 789
Kzo9I GATC 3 cut(s) 714, 736, 815
LguI GCTCTTC 1 cut(s) 1370
LmnI GCTCC 5 cut(s) 179, 257, 385, 1005, 1136
Lsp1109I GCAGC 3 cut(s) 909, 1000, 1058
LweI GCATC 4 cut(s) 66, 783, 1158, 1286
MaeI CTAG 3 cut(s) 173, 954, 978
MaeII ACGT 1 cut(s) 217
MaeIII GTNAC 2 cut(s) 247, 675
MalI GATC 3 cut(s) 716, 738, 817
MboI GATC 3 cut(s) 714, 736, 815
MboII GAAGA 6 cut(s) 495, 746, 771, 1054, 1257, 1357
MflI RGATCY 1 cut(s) 736
MhlI GDGCHC 3 cut(s) 277, 1002, 1141
MluCI AATT 7 cut(s) 21, 286, 435, 669, 806, 1335, 1391
MluI ACGCGT 1 cut(s) 707
MlyI GAGTC 1 cut(s) 1414
MmeI TCCRAC 8 cut(s) 73, 145, 157, 409, 461, 764, 915, 1204
Mph1103I ATGCAT 1 cut(s) 1151
MroNI GCCGGC 1 cut(s) 41
MroXI GAANNNNTTC 1 cut(s) 227
MseI TTAA 4 cut(s) 143, 572, 788, 809
MslI CAYNNNNRTG 2 cut(s) 71, 454
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 2 cut(s) 42, 920
MspR9I CCNGG 5 cut(s) 358, 397, 872, 921, 996
Mva1269I GAATGC 1 cut(s) 856
MvaI CCWGG 4 cut(s) 358, 397, 872, 996
MvnI CGCG 1 cut(s) 709
MwoI GCNNNNNNNGC 2 cut(s) 452, 466
NaeI GCCGGC 1 cut(s) 43
NciI CCSGG 1 cut(s) 921
NcoI CCATGG 1 cut(s) 66
NdeI CATATG 2 cut(s) 37, 1145
NdeII GATC 3 cut(s) 714, 736, 815
NgoMIV GCCGGC 1 cut(s) 41
NlaIII CATG 6 cut(s) 49, 70, 469, 915, 1060, 1295
NlaIV GGNNCC 4 cut(s) 394, 924, 1001, 1159
NsiI ATGCAT 1 cut(s) 1151
NspI RCATGY 1 cut(s) 915
OliI CACNNNNGTG 1 cut(s) 454
PasI CCCWGGG 1 cut(s) 995
PciI ACATGT 1 cut(s) 911
PciSI GCTCTTC 1 cut(s) 1370
PcsI WCGNNNNNNNCGW 1 cut(s) 941
PctI GAATGC 1 cut(s) 856
PdiI GCCGGC 1 cut(s) 43
PdmI GAANNNNTTC 1 cut(s) 227
PfeI GAWTC 6 cut(s) 228, 551, 649, 758, 1227, 1412
PflMI CCANNNNNTGG 1 cut(s) 476
PkrI GCNGC 3 cut(s) 899, 1015, 1073
PleI GAGTC 1 cut(s) 1414
PpsI GAGTC 1 cut(s) 1414
PpuMI RGGWCCY 1 cut(s) 1158
PscI ACATGT 1 cut(s) 911
PshBI ATTAAT 1 cut(s) 809
PsiI TTATAA 1 cut(s) 1334
Psp124BI GAGCTC 1 cut(s) 1141
Psp5II RGGWCCY 1 cut(s) 1158
Psp6I CCWGG 4 cut(s) 356, 395, 870, 994
PspGI CCWGG 4 cut(s) 356, 395, 870, 994
PspN4I GGNNCC 4 cut(s) 394, 924, 1001, 1159
PspPI GGNCC 5 cut(s) 95, 341, 923, 1158, 1384
PspPPI RGGWCCY 1 cut(s) 1158
PsuI RGATCY 1 cut(s) 736
RsaI GTAC 5 cut(s) 348, 394, 691, 910, 916
RsaNI GTAC 5 cut(s) 347, 393, 690, 909, 915
RseI CAYNNNNRTG 2 cut(s) 71, 454
SacI GAGCTC 1 cut(s) 1141
SapI GCTCTTC 1 cut(s) 1370
SaqAI TTAA 4 cut(s) 143, 572, 788, 809
SatI GCNGC 3 cut(s) 898, 1014, 1072
Sau3AI GATC 3 cut(s) 714, 736, 815
Sau96I GGNCC 5 cut(s) 95, 341, 923, 1158, 1384
ScaI AGTACT 1 cut(s) 691
SchI GAGTC 1 cut(s) 1414
ScrFI CCNGG 5 cut(s) 358, 397, 872, 921, 996
SduI GDGCHC 3 cut(s) 277, 1002, 1141
SfaNI GCATC 4 cut(s) 66, 783, 1158, 1286
SfcI CTRYAG 1 cut(s) 958
SinI GGWCC 3 cut(s) 95, 923, 1158
SmiMI CAYNNNNRTG 2 cut(s) 71, 454
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
SpeI ACTAGT 1 cut(s) 977
Sse9I AATT 7 cut(s) 21, 286, 435, 669, 806, 1335, 1391
SsiI CCGC 1 cut(s) 101
SspI AATATT 1 cut(s) 601
SspMI CTAG 3 cut(s) 173, 954, 978
SstI GAGCTC 1 cut(s) 1141
StyD4I CCNGG 5 cut(s) 356, 395, 870, 919, 994
StyI CCWWGG 3 cut(s) 66, 1089, 1380
TaaI ACNGT 5 cut(s) 427, 786, 908, 933, 1021
TaiI ACGT 1 cut(s) 220
TaqI TCGA 1 cut(s) 1023
TasI AATT 7 cut(s) 21, 286, 435, 669, 806, 1335, 1391
TatI WGTACW 4 cut(s) 346, 689, 908, 914
TfiI GAWTC 6 cut(s) 228, 551, 649, 758, 1227, 1412
Tru1I TTAA 4 cut(s) 143, 572, 788, 809
Tru9I TTAA 4 cut(s) 143, 572, 788, 809
TscAI CASTG 2 cut(s) 157, 789
TseI GCWGC 3 cut(s) 897, 1013, 1071
TspDTI ATGAA 5 cut(s) 361, 504, 638, 849, 961
TspRI CASTG 2 cut(s) 157, 789
Van91I CCANNNNNTGG 1 cut(s) 476
VpaK11BI GGWCC 3 cut(s) 95, 923, 1158
VspI ATTAAT 1 cut(s) 809
XagI CCTNNNNNAGG 1 cut(s) 387
XapI RAATTY 1 cut(s) 21
XceI RCATGY 1 cut(s) 915
XcmI CCANNNNNNNNNTGG 1 cut(s) 477
XmnI GAANNNNTTC 1 cut(s) 227
XspI CTAG 3 cut(s) 173, 954, 978
ZrmI AGTACT 1 cut(s) 691
Zsp2I ATGCAT 1 cut(s) 1151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.