Rroxscaffold_2G00098610

Organic cation carnitine transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0008542
Physical Location & Seq
Reverse (-)
19936392 .. 19939439
3048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00098610.1

Sequence Viewer

Length: 1233 bp
ATGGGTGATGGAACCCTGGAATACACTGTCGATGACGCTCTTGTCTCCATGGGGTTTGGAAAGTTCCAACTTCTTGTGCTTGCTTATGCCGGCATGGGTTGGATCTCAGAAGCAATGGAGATGATGCTACTCTCGTTTGTAGGACCAGCGGTCCAGTCTGCTTGGGGTCTTTCTTCTAAACAAGAAAGTTTCATAACCAGTGTGGTGTTTACTGGAATGCTGGTTGGAGCATACTCATGGGGCATCGTCTCAGATAACTACGGACGCAGGAAAGGATTCCTTATTACAGCCATGATTACTTCCGGTGCTGGTTTTCTGAGTGCTTTTTCCCCTAATTATACATCCTTGCTTATTTTCCGTTGTTTGGTCGGTGTTGGCTTGGGAGGTGGTCCGGTACTGTCATCCTGGTTTCTGGAGTTCATTCCTGCTCCTAGCAGAGGCACCTGGATGGTTATCTTTTCAGCTTTTTGGACTGTTGGAACAATTCTTGAGGCTTCACTTGCATGGTTTGTCATGCCAACACTGGGTTGGAGGTGGCTACTTGCACTCTCTGCACTCCCTTCTTCACTTCTTCTTATATTCTATTGGGTAGCACCTGAATCACCAAGGTCTACCTTGCTTTTATGGGTAGTATTCTTTGGGAATGCCTTTTCATATTACGGCCTGGTGCTTCTGACATCTGAGTTGAACGGACATAGCCAATGTGGGCCAACTAAAGTACAGTCAGTCGTGTCTCAGGATATCAACTACAAAAATATTTTCATCGCTAGTTTTGCAGAGTTACCTGGGCTCATCATATCTGCTGCCACGGTGGATAGACTGGGTCGTAAACTTTCGATGTCAGGGATGTTCTTCCTCTGCTGCATTTTTCTACTACCATTGGTAGTCCATCAGCCTGAGGGCTTGACCACTGCCCTTCTGTTTGGAGCTCGTATATGCATCACTGCAACCTTCACCATAGTCTATATATATGCTCCCGAGATATACCCAACGTCAGTACGAACAACTGGTGTTGGAGTTGCAAGCGCAATGGGAAGAATTGGTGGAATGGTATGTCCTCTTGTGGCTGTAGCTTTGGTACATGGCTGTCATCAAACAGCATCCATTCTGCTGTTTGAGGCTGTAATATTTCTTTCAGGAATATGTGTAATCCTTTTCCCATTTGAAACCAAGGGCCGAGAATTGAGCGATAGTGTATCATCTAGCCCAAAGCCGATGGATGCTTCTGTATGA

Protein Analysis

410

Amino Acids

44.21

Weight (kDa)

6.09

Isoelectric Point (pI)

36.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 35 - 204 7.5e-19 Major Facilitator Superfamily
Sugar_tr PF00083 58 - 205 1.8e-22 Sugar (and other) transporter
MFS_1 PF07690 211 - 395 4.9e-11 Major Facilitator Superfamily
Sugar_tr PF00083 263 - 396 1.5e-11 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 41
AccB1I GGYRCC 1 cut(s) 440
AccI GTMKAC 1 cut(s) 611
AciI CCGC 1 cut(s) 149
AclWI GGATC 1 cut(s) 110
AfaI GTAC 4 cut(s) 396, 720, 999, 1080
AfiI CCNNNNNNNGG 3 cut(s) 364, 437, 524
AgsI TTSAA 2 cut(s) 688, 1166
AhdI GACNNNNNGTC 1 cut(s) 149
AjnI CCWGG 5 cut(s) 15, 404, 443, 663, 784
AluBI AGCT 3 cut(s) 464, 929, 1073
AluI AGCT 3 cut(s) 464, 929, 1073
Alw21I GWGCWC 1 cut(s) 931
Alw26I GTCTC 3 cut(s) 49, 253, 738
AlwI GGATC 1 cut(s) 110
Ama87I CYCGRG 1 cut(s) 977
AoxI GGCC 3 cut(s) 661, 707, 1174
ApeKI GCWGC 2 cut(s) 803, 861
Asp700I GAANNNNTTC 1 cut(s) 275
AspLEI GCGC 1 cut(s) 1028
AspS9I GGNCC 5 cut(s) 143, 151, 389, 707, 1174
AsuHPI GGTGA 3 cut(s) 17, 594, 946
AvaI CYCGRG 1 cut(s) 977
AvaII GGWCC 3 cut(s) 143, 151, 389
AxyI CCTNAGG 1 cut(s) 897
BanI GGYRCC 1 cut(s) 440
BanII GRGCYC 2 cut(s) 792, 931
Bbv12I GWGCWC 1 cut(s) 931
BbvI GCAGC 2 cut(s) 790, 848
BccI CCATC 4 cut(s) 2, 442, 897, 1210
BceAI ACGGC 1 cut(s) 676
BciT130I CCWGG 5 cut(s) 17, 406, 445, 665, 786
BcoDI GTCTC 3 cut(s) 49, 253, 738
BfaI CTAG 3 cut(s) 432, 768, 1203
BfmI CTRYAG 1 cut(s) 1068
BisI GCNGC 2 cut(s) 804, 862
BlsI GCNGC 2 cut(s) 805, 863
Bme1390I CCNGG 5 cut(s) 17, 406, 445, 665, 786
Bme18I GGWCC 3 cut(s) 143, 151, 389
BmeRI GACNNNNNGTC 1 cut(s) 149
BmeT110I CYCGRG 1 cut(s) 977
BmgT120I GGNCC 5 cut(s) 143, 151, 389, 707, 1174
BmiI GGNNCC 2 cut(s) 13, 442
BmrFI CCNGG 5 cut(s) 17, 406, 445, 665, 786
BmrI ACTGGG 2 cut(s) 533, 830
BmsI GCATC 5 cut(s) 114, 252, 948, 1109, 1210
BmuI ACTGGG 2 cut(s) 533, 830
BpmI CTGGAG 1 cut(s) 434
BpuEI CTTGAG 1 cut(s) 509
BsaBI GATNNNNATC 1 cut(s) 452
BsaJI CCNNGG 6 cut(s) 15, 48, 605, 785, 807, 1170
BsaWI WCCGGW 2 cut(s) 302, 391
Bsc4I CCNNNNNNNGG 3 cut(s) 364, 437, 524
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 6 cut(s) 154, 198, 217, 528, 825, 1012
Bse21I CCTNAGG 1 cut(s) 897
Bse3DI GCAATG 2 cut(s) 120, 1035
Bse8I GATNNNNATC 1 cut(s) 452
BseBI CCWGG 5 cut(s) 17, 406, 445, 665, 786
BseDI CCNNGG 6 cut(s) 15, 48, 605, 785, 807, 1170
BseGI GGATG 6 cut(s) 341, 401, 453, 852, 1100, 1225
BseJI GATNNNNATC 1 cut(s) 452
BseLI CCNNNNNNNGG 3 cut(s) 364, 437, 524
BseMI GCAATG 2 cut(s) 120, 1035
BseMII CTCAG 6 cut(s) 120, 264, 308, 672, 749, 888
BseNI ACTGG 6 cut(s) 154, 198, 217, 528, 825, 1012
BseXI GCAGC 2 cut(s) 790, 848
BsgI GTGCAG 1 cut(s) 537
BshFI GGCC 3 cut(s) 663, 709, 1176
BshNI GGYRCC 1 cut(s) 440
BsiHKAI GWGCWC 1 cut(s) 931
BsiHKCI CYCGRG 1 cut(s) 977
BsiSI CCGG 3 cut(s) 90, 303, 392
BslI CCNNNNNNNGG 3 cut(s) 364, 437, 524
BsmAI GTCTC 3 cut(s) 49, 253, 738
BsmBI CGTCTC 1 cut(s) 253
BsmI GAATGC 2 cut(s) 222, 649
BsnI GGCC 3 cut(s) 663, 709, 1176
BsoBI CYCGRG 1 cut(s) 977
Bsp1286I GDGCHC 2 cut(s) 792, 931
Bsp143I GATC 1 cut(s) 102
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 1 cut(s) 149
BspANI GGCC 3 cut(s) 663, 709, 1176
BspCNI CTCAG 6 cut(s) 119, 263, 309, 673, 748, 889
BspLI GGNNCC 2 cut(s) 13, 442
BspPI GGATC 1 cut(s) 110
BspT107I GGYRCC 1 cut(s) 440
BsrDI GCAATG 2 cut(s) 120, 1035
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 6 cut(s) 154, 198, 217, 528, 825, 1012
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 6 cut(s) 15, 48, 605, 785, 807, 1170
BssMI GATC 1 cut(s) 102
BssT1I CCWWGG 3 cut(s) 48, 605, 1170
Bst2UI CCWGG 5 cut(s) 17, 406, 445, 665, 786
Bst4CI ACNGT 5 cut(s) 28, 399, 475, 723, 811
BstAPI GCANNNNNTGC 1 cut(s) 551
BstC8I GCNNGC 3 cut(s) 81, 91, 1024
BstDEI CTNAG 6 cut(s) 106, 250, 317, 681, 735, 897
BstDSI CCRYGG 2 cut(s) 48, 807
BstENI CCTNNNNNAGG 1 cut(s) 435
BstF5I GGATG 6 cut(s) 341, 401, 453, 852, 1100, 1225
BstHHI GCGC 1 cut(s) 1028
BstKTI GATC 1 cut(s) 105
BstMAI GTCTC 3 cut(s) 49, 253, 738
BstMBI GATC 1 cut(s) 102
BstMWI GCNNNNNNNGC 3 cut(s) 500, 551, 773
BstNI CCWGG 5 cut(s) 17, 406, 445, 665, 786
BstSCI CCNGG 5 cut(s) 15, 404, 443, 663, 784
BstSFI CTRYAG 1 cut(s) 1068
BstV1I GCAGC 2 cut(s) 790, 848
BstX2I RGATCY 1 cut(s) 102
BstYI RGATCY 1 cut(s) 102
Bsu36I CCTNAGG 1 cut(s) 897
BsuRI GGCC 3 cut(s) 663, 709, 1176
BtgI CCRYGG 2 cut(s) 48, 807
BtgZI GCGATG 1 cut(s) 748
BtsCI GGATG 6 cut(s) 341, 401, 453, 852, 1100, 1225
BtsI GCAGTG 2 cut(s) 909, 942
BtsIMutI CAGTG 5 cut(s) 24, 205, 521, 909, 942
Cac8I GCNNGC 3 cut(s) 81, 91, 1024
CfoI GCGC 1 cut(s) 1028
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 5 cut(s) 143, 151, 389, 707, 1174
CseI GACGC 2 cut(s) 44, 273
Csp6I GTAC 4 cut(s) 395, 719, 998, 1079
CviAII CATG 7 cut(s) 49, 94, 237, 292, 504, 514, 1082
CviQI GTAC 4 cut(s) 395, 719, 998, 1079
DdeI CTNAG 6 cut(s) 106, 250, 317, 681, 735, 897
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
DrdI GACNNNNNNGTC 1 cut(s) 41
DriI GACNNNNNGTC 1 cut(s) 149
DseDI GACNNNNNNGTC 1 cut(s) 41
Eam1105I GACNNNNNGTC 1 cut(s) 149
Ecl136II GAGCTC 1 cut(s) 929
Eco130I CCWWGG 3 cut(s) 48, 605, 1170
Eco24I GRGCYC 2 cut(s) 792, 931
Eco32I GATATC 1 cut(s) 742
Eco47I GGWCC 3 cut(s) 143, 151, 389
Eco53kI GAGCTC 1 cut(s) 929
Eco81I CCTNAGG 1 cut(s) 897
Eco88I CYCGRG 1 cut(s) 977
EcoICRI GAGCTC 1 cut(s) 929
EcoNI CCTNNNNNAGG 1 cut(s) 435
EcoRII CCWGG 5 cut(s) 15, 404, 443, 663, 784
EcoRV GATATC 1 cut(s) 742
EcoT14I CCWWGG 3 cut(s) 48, 605, 1170
EcoT22I ATGCAT 1 cut(s) 941
EcoT38I GRGCYC 2 cut(s) 792, 931
ErhI CCWWGG 3 cut(s) 48, 605, 1170
Esp3I CGTCTC 1 cut(s) 253
FaeI CATG 7 cut(s) 52, 97, 240, 295, 507, 517, 1085
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FatI CATG 7 cut(s) 48, 93, 236, 291, 503, 513, 1081
FblI GTMKAC 1 cut(s) 611
Fnu4HI GCNGC 2 cut(s) 804, 862
FokI GGATG 5 cut(s) 328, 388, 460, 859, 1087
FriOI GRGCYC 2 cut(s) 792, 931
Fsp4HI GCNGC 2 cut(s) 804, 862
FspBI CTAG 3 cut(s) 432, 768, 1203
GlaI GCGC 1 cut(s) 1027
GluI GCNGC 2 cut(s) 804, 862
GsuI CTGGAG 1 cut(s) 434
HaeIII GGCC 3 cut(s) 663, 709, 1176
HapII CCGG 3 cut(s) 90, 303, 392
HgaI GACGC 2 cut(s) 44, 273
HhaI GCGC 1 cut(s) 1028
Hin1II CATG 7 cut(s) 52, 97, 240, 295, 507, 517, 1085
Hin6I GCGC 1 cut(s) 1026
HinP1I GCGC 1 cut(s) 1026
HinfI GANTC 2 cut(s) 276, 599
HpaII CCGG 3 cut(s) 90, 303, 392
HphI GGTGA 3 cut(s) 17, 594, 946
Hpy166II GTNNAC 3 cut(s) 210, 612, 830
Hpy188I TCNGA 5 cut(s) 109, 253, 318, 675, 682
Hpy188III TCNNGA 5 cut(s) 413, 488, 737, 977, 1137
Hpy8I GTNNAC 3 cut(s) 210, 612, 830
HpyAV CCTTC 3 cut(s) 570, 926, 961
HpyCH4III ACNGT 5 cut(s) 28, 399, 475, 723, 811
HpyCH4IV ACGT 1 cut(s) 992
HpyCH4V TGCA 8 cut(s) 503, 545, 554, 776, 864, 939, 947, 1022
HpyF10VI GCNNNNNNNGC 3 cut(s) 500, 551, 773
HpyF3I CTNAG 6 cut(s) 106, 250, 317, 681, 735, 897
HpySE526I ACGT 1 cut(s) 992
Hsp92II CATG 7 cut(s) 52, 97, 240, 295, 507, 517, 1085
HspAI GCGC 1 cut(s) 1026
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
Kzo9I GATC 1 cut(s) 102
LmnI GCTCC 4 cut(s) 227, 433, 926, 979
Lsp1109I GCAGC 2 cut(s) 790, 848
LweI GCATC 5 cut(s) 114, 252, 948, 1109, 1210
MaeI CTAG 3 cut(s) 432, 768, 1203
MaeII ACGT 1 cut(s) 992
MaeIII GTNAC 1 cut(s) 780
MalI GATC 1 cut(s) 104
MboI GATC 1 cut(s) 102
MboII GAAGA 5 cut(s) 165, 555, 563, 844, 1047
MflI RGATCY 1 cut(s) 102
MhlI GDGCHC 2 cut(s) 792, 931
MluCI AATT 4 cut(s) 334, 483, 1038, 1181
MmeI TCCRAC 6 cut(s) 80, 91, 205, 457, 509, 994
MnlI CCTC 8 cut(s) 377, 431, 484, 525, 866, 892, 1068, 1111
Mph1103I ATGCAT 1 cut(s) 941
MroNI GCCGGC 1 cut(s) 89
MroXI GAANNNNTTC 1 cut(s) 275
MslI CAYNNNNRTG 3 cut(s) 235, 446, 502
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 3 cut(s) 90, 303, 392
MspR9I CCNGG 5 cut(s) 17, 406, 445, 665, 786
Mva1269I GAATGC 2 cut(s) 222, 649
MvaI CCWGG 5 cut(s) 17, 406, 445, 665, 786
MwoI GCNNNNNNNGC 3 cut(s) 500, 551, 773
NaeI GCCGGC 1 cut(s) 91
NcoI CCATGG 1 cut(s) 48
NdeII GATC 1 cut(s) 102
NgoMIV GCCGGC 1 cut(s) 89
NlaIII CATG 7 cut(s) 52, 97, 240, 295, 507, 517, 1085
NlaIV GGNNCC 2 cut(s) 13, 442
NmeAIII GCCGAG 1 cut(s) 1202
NsiI ATGCAT 1 cut(s) 941
PctI GAATGC 2 cut(s) 222, 649
PdiI GCCGGC 1 cut(s) 91
PdmI GAANNNNTTC 1 cut(s) 275
PfeI GAWTC 2 cut(s) 276, 599
PflFI GACNNNGTC 1 cut(s) 822
PkrI GCNGC 2 cut(s) 805, 863
Psp124BI GAGCTC 1 cut(s) 931
Psp6I CCWGG 5 cut(s) 15, 404, 443, 663, 784
PspGI CCWGG 5 cut(s) 15, 404, 443, 663, 784
PspN4I GGNNCC 2 cut(s) 13, 442
PspPI GGNCC 5 cut(s) 143, 151, 389, 707, 1174
PsuI RGATCY 1 cut(s) 102
PsyI GACNNNGTC 1 cut(s) 822
RsaI GTAC 4 cut(s) 396, 720, 999, 1080
RsaNI GTAC 4 cut(s) 395, 719, 998, 1079
RseI CAYNNNNRTG 3 cut(s) 235, 446, 502
SacI GAGCTC 1 cut(s) 931
SatI GCNGC 2 cut(s) 804, 862
Sau3AI GATC 1 cut(s) 102
Sau96I GGNCC 5 cut(s) 143, 151, 389, 707, 1174
ScrFI CCNGG 5 cut(s) 17, 406, 445, 665, 786
SduI GDGCHC 2 cut(s) 792, 931
SfaNI GCATC 5 cut(s) 114, 252, 948, 1109, 1210
SfcI CTRYAG 1 cut(s) 1068
SinI GGWCC 3 cut(s) 143, 151, 389
SmiMI CAYNNNNRTG 3 cut(s) 235, 446, 502
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
Sse9I AATT 4 cut(s) 334, 483, 1038, 1181
SsiI CCGC 1 cut(s) 149
SspI AATATT 2 cut(s) 757, 1128
SspMI CTAG 3 cut(s) 432, 768, 1203
SstI GAGCTC 1 cut(s) 931
StyD4I CCNGG 5 cut(s) 15, 404, 443, 663, 784
StyI CCWWGG 3 cut(s) 48, 605, 1170
TaaI ACNGT 5 cut(s) 28, 399, 475, 723, 811
TaiI ACGT 1 cut(s) 995
TaqI TCGA 2 cut(s) 30, 836
TasI AATT 4 cut(s) 334, 483, 1038, 1181
TatI WGTACW 1 cut(s) 718
TfiI GAWTC 2 cut(s) 276, 599
TscAI CASTG 5 cut(s) 31, 205, 528, 916, 949
TseI GCWGC 2 cut(s) 803, 861
TspDTI ATGAA 4 cut(s) 181, 409, 642, 751
TspGWI ACGGA 3 cut(s) 276, 347, 705
TspRI CASTG 5 cut(s) 31, 205, 528, 916, 949
Tth111I GACNNNGTC 1 cut(s) 822
VpaK11BI GGWCC 3 cut(s) 143, 151, 389
XagI CCTNNNNNAGG 1 cut(s) 435
XcmI CCANNNNNNNNNTGG 1 cut(s) 525
XmiI GTMKAC 1 cut(s) 611
XmnI GAANNNNTTC 1 cut(s) 275
XspI CTAG 3 cut(s) 432, 768, 1203
Zsp2I ATGCAT 1 cut(s) 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.