Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008542

Physical Location & Seq

Genomic Coordinates Reverse (-)

51970589 .. 51973080

Gene Structure 2492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0407500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGTGACCGGCCGGAAAACAACGTCGTGCGACGAAGAAATGGCCGAGTCCAAGGCGGTGGAGAACGGAACAACCACCATGAGTACTACTGGGCAGGCGACCAAGTCACCAGCTCAACTCGGCGCCTTGCTCCGGAAGGCTGACGTGGCGCATGTGTGCCTCAGGCTGCTGTGCATGGCCTCCTCCGTCACGGCGCTGTCGTTCATGGTCACCGCCCAGCAAGCCAGCACCGTCACTATCTACGGTTTCCATCTCCCCGTTTACTCCAAGTGGTCTTTCTCCGAGTCCTTCGAATATCTGGTTGCAGTCACGGCAGCTGTCACGGTCCATTCATTTCTGCAACTACTGATAAATGGATCTAGGCTGCTGAGAAAGTCTCCGATGATTCCCTCAAGGAATCATGCCTGGCTTAGCTTTGCTGGGGATCAGGTATTTGCATATGCAATGATGAGCGCAGGGTCAGCTGCATCCGGAGTAAGCAACCTGAATCGCACAGGAATCCGGCACACACCCCTCCCGAATTTCTGTAAACCACTAAATATCTTCTGCAACCACATTGCCATCTCGATAGGCTTCACTTTCTTAAGCTGCCTCTTGCTGGCCACATCTGCTGTTCAGAATGTAATCTGGCTCTCCCACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006855 GO:0008028 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0008519 GO:0015075 GO:0015101 GO:0015238 GO:0015318 GO:0015651 GO:0015695 GO:0015696 GO:0015697 GO:0015711 GO:0015718 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0034220 GO:0035461 GO:0042221 GO:0042493 GO:0044425 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051180 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0090416 GO:0090417 GO:0090482 GO:0098655 GO:0098656 GO:1903825 GO:1905039 GO:2001142 GO:2001143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 Sugar_tr

Protein Analysis

214

Amino Acids

23.1

Weight (kDa)

9.17

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	46 - 199	6.9e-38	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13050 AT3G13050 AT3G13050 AT3G13050
fragaria_vesca	FvH4_6g36460 FvH4_6g36460 FvH4_6g36460
malus_domestica	MD09G1168900.v1.1 MD17G1157900.v1.1
prunus_persica	Prupe.3G027200_v2.0.a1 Prupe.3G027200_v2.0.a1
pyrus_communis	pycom09g08650
rosa_chinensis	RchiOBHm_Chr2g0148591
rosa_laevigata	RLG00000020353
rosa_roxburghii	Rroxscaffold_2G00098610
rosa_rugosa	Rorug02G0407400 Rorug02G0407500 Rorug02G0407600
rosa_samantha	Rh2AG466300 Rh2BG479400 Rh2CG452800 Rh2DG488200
rosa_wichuraiana	Rw2G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AccIII	TCCGGA	2 cut(s)	132, 470
AciI	CCGC	2 cut(s)	56, 213
AclWI	GGATC	2 cut(s)	364, 432
AcoI	YGGCCR	3 cut(s)	10, 42, 600
AcsI	RAATTY	1 cut(s)	520
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	85
AfiI	CCNNNNNNNGG	2 cut(s)	132, 598
AflII	CTTAAG	1 cut(s)	583
AjiI	CACGTC	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	404
AjuI	GAANNNNNNNTTGG	2 cut(s)	260, 292
AluBI	AGCT	5 cut(s)	113, 317, 414, 464, 588
AluI	AGCT	5 cut(s)	113, 317, 414, 464, 588
Alw26I	GTCTC	1 cut(s)	381
AlwI	GGATC	2 cut(s)	364, 432
Aor13HI	TCCGGA	2 cut(s)	132, 470
AoxI	GGCC	4 cut(s)	10, 42, 177, 600
ApeKI	GCWGC	5 cut(s)	166, 314, 364, 464, 588
ApoI	RAATTY	1 cut(s)	520
AspLEI	GCGC	4 cut(s)	125, 151, 196, 455
AspS9I	GGNCC	1 cut(s)	325
AsuHPI	GGTGA	3 cut(s)	16, 99, 202
AsuII	TTCGAA	1 cut(s)	291
AvaII	GGWCC	1 cut(s)	325
AxyI	CCTNAGG	1 cut(s)	161
BalI	TGGCCA	1 cut(s)	602
BanI	GGYRCC	1 cut(s)	122
BbvI	GCAGC	5 cut(s)	153, 326, 351, 451, 575
BccI	CCATC	2 cut(s)	258, 569
BceAI	ACGGC	2 cut(s)	207, 327
BciT130I	CCWGG	1 cut(s)	406
BcoDI	GTCTC	1 cut(s)	381
BfaI	CTAG	1 cut(s)	360
BfoI	RGCGCY	2 cut(s)	126, 197
BfrI	CTTAAG	1 cut(s)	583
BisI	GCNGC	5 cut(s)	167, 315, 365, 465, 589
BlpI	GCTNAGC	1 cut(s)	410
BlsI	GCNGC	5 cut(s)	168, 316, 366, 466, 590
BmcAI	AGTACT	1 cut(s)	85
Bme1390I	CCNGG	1 cut(s)	406
Bme18I	GGWCC	1 cut(s)	325
BmgBI	CACGTC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	406
BmrI	ACTGGG	1 cut(s)	99
BmsI	GCATC	1 cut(s)	476
BmuI	ACTGGG	1 cut(s)	99
BplI	GAGNNNNNCTC	2 cut(s)	361, 393
Bpu1102I	GCTNAGC	1 cut(s)	410
Bpu14I	TTCGAA	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	376
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	51
BsaWI	WCCGGW	2 cut(s)	132, 470
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 598
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	1 cut(s)	94
Bse21I	CCTNAGG	1 cut(s)	161
Bse3DI	GCAATG	2 cut(s)	450, 555
BseAI	TCCGGA	2 cut(s)	132, 470
BseBI	CCWGG	1 cut(s)	406
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	1 cut(s)	467
BseLI	CCNNNNNNNGG	2 cut(s)	132, 598
BseMI	GCAATG	2 cut(s)	450, 555
BseMII	CTCAG	2 cut(s)	175, 359
BseNI	ACTGG	1 cut(s)	94
BseRI	GAGGAG	1 cut(s)	172
BseX3I	CGGCCG	1 cut(s)	10
BseXI	GCAGC	5 cut(s)	153, 326, 351, 451, 575
BseYI	CCCAGC	2 cut(s)	216, 419
Bsh1285I	CGRYCG	1 cut(s)	13
BshFI	GGCC	4 cut(s)	12, 44, 179, 602
BshNI	GGYRCC	1 cut(s)	122
BsiEI	CGRYCG	1 cut(s)	13
BsiSI	CCGG	5 cut(s)	9, 13, 133, 471, 502
BslI	CCNNNNNNNGG	2 cut(s)	132, 598
BsmAI	GTCTC	1 cut(s)	381
BsnI	GGCC	4 cut(s)	12, 44, 179, 602
Bsp119I	TTCGAA	1 cut(s)	291
Bsp13I	TCCGGA	2 cut(s)	132, 470
Bsp143I	GATC	2 cut(s)	356, 424
Bsp1720I	GCTNAGC	1 cut(s)	410
BspACI	CCGC	2 cut(s)	56, 213
BspANI	GGCC	4 cut(s)	12, 44, 179, 602
BspCNI	CTCAG	2 cut(s)	174, 360
BspEI	TCCGGA	2 cut(s)	132, 470
BspLI	GGNNCC	1 cut(s)	124
BspPI	GGATC	2 cut(s)	364, 432
BspT104I	TTCGAA	1 cut(s)	291
BspT107I	GGYRCC	1 cut(s)	122
BspTI	CTTAAG	1 cut(s)	583
BsrDI	GCAATG	2 cut(s)	450, 555
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	94
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	2 cut(s)	356, 424
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	406
Bst4CI	ACNGT	3 cut(s)	232, 245, 325
BstACI	GRCGYC	1 cut(s)	123
BstAFI	CTTAAG	1 cut(s)	583
BstBI	TTCGAA	1 cut(s)	291
BstC8I	GCNNGC	4 cut(s)	96, 222, 226, 600
BstDEI	CTNAG	3 cut(s)	161, 368, 410
BstEII	GGTNACC	2 cut(s)	4, 208
BstF5I	GGATG	1 cut(s)	467
BstH2I	RGCGCY	2 cut(s)	126, 197
BstHHI	GCGC	4 cut(s)	125, 151, 196, 455
BstKTI	GATC	2 cut(s)	359, 427
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	2 cut(s)	356, 424
BstMCI	CGRYCG	1 cut(s)	13
BstMWI	GCNNNNNNNGC	5 cut(s)	146, 221, 311, 461, 608
BstNI	CCWGG	1 cut(s)	406
BstNSI	RCATGY	1 cut(s)	155
BstPI	GGTNACC	2 cut(s)	4, 208
BstSCI	CCNGG	1 cut(s)	404
BstV1I	GCAGC	5 cut(s)	153, 326, 351, 451, 575
BstX2I	RGATCY	1 cut(s)	356
BstXI	CCANNNNNNTGG	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	356
BstZI	CGGCCG	1 cut(s)	10
Bsu36I	CCTNAGG	1 cut(s)	161
BsuRI	GGCC	4 cut(s)	12, 44, 179, 602
BtrI	CACGTC	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	467
Cac8I	GCNNGC	4 cut(s)	96, 222, 226, 600
CfoI	GCGC	4 cut(s)	125, 151, 196, 455
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	325
Csp6I	GTAC	1 cut(s)	84
CviAII	CATG	5 cut(s)	79, 152, 175, 205, 401
CviQI	GTAC	1 cut(s)	84
DdeI	CTNAG	3 cut(s)	161, 368, 410
DinI	GGCGCC	1 cut(s)	124
DpnI	GATC	2 cut(s)	358, 426
DpnII	GATC	2 cut(s)	356, 424
EaeI	YGGCCR	3 cut(s)	10, 42, 600
EagI	CGGCCG	1 cut(s)	10
EclXI	CGGCCG	1 cut(s)	10
Eco130I	CCWWGG	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	325
Eco52I	CGGCCG	1 cut(s)	10
Eco81I	CCTNAGG	1 cut(s)	161
Eco91I	GGTNACC	2 cut(s)	4, 208
EcoO65I	GGTNACC	2 cut(s)	4, 208
EcoRII	CCWGG	1 cut(s)	404
EcoT14I	CCWWGG	1 cut(s)	51
EgeI	GGCGCC	1 cut(s)	124
EheI	GGCGCC	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	5 cut(s)	82, 155, 178, 208, 404
FaiI	YATR	7 cut(s)	80, 153, 176, 206, 402, 439, 441
FatI	CATG	5 cut(s)	78, 151, 174, 204, 400
FauNDI	CATATG	1 cut(s)	439
Fnu4HI	GCNGC	5 cut(s)	167, 315, 365, 465, 589
FokI	GGATG	1 cut(s)	454
Fsp4HI	GCNGC	5 cut(s)	167, 315, 365, 465, 589
FspBI	CTAG	1 cut(s)	360
GlaI	GCGC	4 cut(s)	124, 150, 195, 454
GluI	GCNGC	5 cut(s)	167, 315, 365, 465, 589
GsaI	CCCAGC	2 cut(s)	220, 423
HaeII	RGCGCY	2 cut(s)	126, 197
HaeIII	GGCC	4 cut(s)	12, 44, 179, 602
HapII	CCGG	5 cut(s)	9, 13, 133, 471, 502
HhaI	GCGC	4 cut(s)	125, 151, 196, 455
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	5 cut(s)	82, 155, 178, 208, 404
Hin6I	GCGC	4 cut(s)	123, 149, 194, 453
HinP1I	GCGC	4 cut(s)	123, 149, 194, 453
HinfI	GANTC	6 cut(s)	47, 284, 385, 397, 487, 498
HpaII	CCGG	5 cut(s)	9, 13, 133, 471, 502
HphI	GGTGA	3 cut(s)	16, 99, 202
Hpy166II	GTNNAC	2 cut(s)	262, 530
Hpy188I	TCNGA	3 cut(s)	283, 381, 618
Hpy188III	TCNNGA	4 cut(s)	133, 471, 517, 565
Hpy8I	GTNNAC	2 cut(s)	262, 530
Hpy99I	CGWCG	2 cut(s)	28, 35
HpyAV	CCTTC	2 cut(s)	130, 298
HpyCH4III	ACNGT	3 cut(s)	232, 245, 325
HpyCH4IV	ACGT	2 cut(s)	23, 144
HpyCH4V	TGCA	7 cut(s)	174, 305, 340, 437, 443, 467, 549
HpyF10VI	GCNNNNNNNGC	5 cut(s)	146, 221, 311, 461, 608
HpyF3I	CTNAG	3 cut(s)	161, 368, 410
HpySE526I	ACGT	2 cut(s)	23, 144
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	5 cut(s)	82, 155, 178, 208, 404
HspAI	GCGC	4 cut(s)	123, 149, 194, 453
KasI	GGCGCC	1 cut(s)	122
Kpn2I	TCCGGA	2 cut(s)	132, 470
Kzo9I	GATC	2 cut(s)	356, 424
LmnI	GCTCC	1 cut(s)	135
Lsp1109I	GCAGC	5 cut(s)	153, 326, 351, 451, 575
LweI	GCATC	1 cut(s)	476
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	2 cut(s)	23, 144
MaeIII	GTNAC	7 cut(s)	4, 105, 187, 208, 232, 307, 319
MalI	GATC	2 cut(s)	358, 426
MboI	GATC	2 cut(s)	356, 424
MboII	GAAGA	2 cut(s)	47, 535
MflI	RGATCY	1 cut(s)	356
MlsI	TGGCCA	1 cut(s)	602
MluCI	AATT	1 cut(s)	520
MluNI	TGGCCA	1 cut(s)	602
Mly113I	GGCGCC	1 cut(s)	123
MlyI	GAGTC	2 cut(s)	56, 293
MnlI	CCTC	6 cut(s)	170, 190, 193, 400, 524, 602
Mox20I	TGGCCA	1 cut(s)	602
MroI	TCCGGA	2 cut(s)	132, 470
MscI	TGGCCA	1 cut(s)	602
MseI	TTAA	1 cut(s)	584
Msp20I	TGGCCA	1 cut(s)	602
MspA1I	CMGCKG	2 cut(s)	317, 464
MspCI	CTTAAG	1 cut(s)	583
MspI	CCGG	5 cut(s)	9, 13, 133, 471, 502
MspR9I	CCNGG	1 cut(s)	406
MvaI	CCWGG	1 cut(s)	406
MwoI	GCNNNNNNNGC	5 cut(s)	146, 221, 311, 461, 608
NarI	GGCGCC	1 cut(s)	123
NdeI	CATATG	1 cut(s)	439
NdeII	GATC	2 cut(s)	356, 424
NlaIII	CATG	5 cut(s)	82, 155, 178, 208, 404
NlaIV	GGNNCC	1 cut(s)	124
NmeAIII	GCCGAG	2 cut(s)	70, 99
NmuCI	GTSAC	7 cut(s)	4, 105, 187, 208, 232, 307, 319
NspI	RCATGY	1 cut(s)	155
NspV	TTCGAA	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	1 cut(s)	197
PfeI	GAWTC	4 cut(s)	385, 397, 487, 498
PflFI	GACNNNGTC	1 cut(s)	103
PkrI	GCNGC	5 cut(s)	168, 316, 366, 466, 590
PleI	GAGTC	2 cut(s)	55, 292
PluTI	GGCGCC	1 cut(s)	126
PpsI	GAGTC	2 cut(s)	55, 292
Psp6I	CCWGG	1 cut(s)	404
PspEI	GGTNACC	2 cut(s)	4, 208
PspFI	CCCAGC	2 cut(s)	216, 419
PspGI	CCWGG	1 cut(s)	404
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	356
PsyI	GACNNNGTC	1 cut(s)	103
PvuII	CAGCTG	2 cut(s)	317, 464
RsaI	GTAC	1 cut(s)	85
RsaNI	GTAC	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	584
SatI	GCNGC	5 cut(s)	167, 315, 365, 465, 589
Sau3AI	GATC	2 cut(s)	356, 424
Sau96I	GGNCC	1 cut(s)	325
ScaI	AGTACT	1 cut(s)	85
SchI	GAGTC	2 cut(s)	56, 293
ScrFI	CCNGG	1 cut(s)	406
SetI	ASST	9 cut(s)	26, 115, 147, 319, 416, 432, 466, 486, 590
SfaNI	GCATC	1 cut(s)	476
SfoI	GGCGCC	1 cut(s)	124
SfuI	TTCGAA	1 cut(s)	291
SinI	GGWCC	1 cut(s)	325
SmlI	CTYRAG	2 cut(s)	391, 583
SmoI	CTYRAG	2 cut(s)	391, 583
Sse9I	AATT	1 cut(s)	520
SsiI	CCGC	2 cut(s)	56, 213
SspDI	GGCGCC	1 cut(s)	122
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	1 cut(s)	404
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	3 cut(s)	232, 245, 325
TaiI	ACGT	2 cut(s)	26, 147
TaqI	TCGA	2 cut(s)	291, 566
TasI	AATT	1 cut(s)	520
TatI	WGTACW	1 cut(s)	83
TfiI	GAWTC	4 cut(s)	385, 397, 487, 498
Tru1I	TTAA	1 cut(s)	584
Tru9I	TTAA	1 cut(s)	584
TseFI	GTSAC	7 cut(s)	4, 105, 187, 208, 232, 307, 319
TseI	GCWGC	5 cut(s)	166, 314, 364, 464, 588
Tsp45I	GTSAC	7 cut(s)	4, 105, 187, 208, 232, 307, 319
TspDTI	ATGAA	2 cut(s)	193, 321
TspGWI	ACGGA	2 cut(s)	81, 175
Tth111I	GACNNNGTC	1 cut(s)	103
Vha464I	CTTAAG	1 cut(s)	583
VpaK11BI	GGWCC	1 cut(s)	325
XapI	RAATTY	1 cut(s)	520
XceI	RCATGY	1 cut(s)	155
XspI	CTAG	1 cut(s)	360
ZrmI	AGTACT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.