Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008542

Physical Location & Seq

Genomic Coordinates Reverse (-)

51980955 .. 51986007

Gene Structure 5053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0407600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAGTGCCACTGCAAATAGAACTCCGAAATCTAGTAGGCAGACATTGTTTTACCAAGATCTAGCTTCACCTATCTCGGCCCGGAGAGGAAAAATCTCAACTCCAGGCCAGGCAGCAGCAGTATCTGCTCTGTGGCGCGAGAGTTGTAGTGATCGGTCGGATCTTCCCCCTCCTCCACTTTACACTTTGGAAGACCGCTCAGACTTTTCCCCTGAATCTGGAATTCAAGATTATCCGATATCCCCAGAAATCAAATCAGATCCCAGAACTCCGTTCCAAAGTTCTGGATATGATTTCTCGACTCCTGTCAAAAACAAATCAGAGGCCAGCACTTCTTATGCTCTCTCAAGTGGACAGCATGGCCAACAGGGTTCGGCAACTATGAATTGGTGGTCATTCTCAAAGAGTGGTGGCGAGCAAGATGACAAGGGAAGGAGTTCACCAGTGGAGGGTGTTGTTCAGCCTGGTGCTTTGATCACTCTTCCACCTCCAAGGGAAGTTGCAAGGCCAGAAATGCAAAGGAGTACCATGCCTGCAGCAAATCCCCAAGAGGAAGAATGGGTTACTGTTTATGGATTTTCTGCAGCTGATACAAATTTAGTTTTACGGGAGTTGGAGAAATGTGGTGTGATTTTGAAACATGTTCCTGGCCCAAGAGATGCCAACTGGATGCACATTCTATATCAGAGTTCCTCTGATGCTCAGAAGGCTCTCAGTAAGAATGGGATGCAAATTAATGGAGCATTAATCATAGGTGTGAAGCCACTGGATCCAATGCAACGCCATACCTTAAATGAAAGGCTCATCAACAATCAGGGTTTCATGACTTTGCCACCTCCATCATCCATGAGACATGCAGAACTAGATGCTTCAAGAGCCCCCCCTCGCTCTTACTATCTTCAAAATGGTAATACCAGTGTGCAGCAATCTGGAGGCACAATTGCTTCCCCAACAAAGTCATTGGTTTCCAAGGTCATGGATTTGATGTTTGGAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006855 GO:0008028 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0008519 GO:0015075 GO:0015101 GO:0015238 GO:0015318 GO:0015651 GO:0015695 GO:0015696 GO:0015697 GO:0015711 GO:0015718 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0034220 GO:0035461 GO:0042221 GO:0042493 GO:0044425 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051180 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0090416 GO:0090417 GO:0090482 GO:0098655 GO:0098656 GO:1903825 GO:1905039 GO:2001142 GO:2001143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 Sugar_tr

Protein Analysis

332

Amino Acids

36.17

Weight (kDa)

7.76

Isoelectric Point (pI)

60.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_Nup35	PF05172	182 - 266	2.6e-29	Nup53/35/40-type RNA recognition motif
Nup35_RRM_2	PF14605	186 - 238	1.3e-07	Nup53/35/40-type RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13050 AT3G13050 AT3G13050 AT3G13050
fragaria_vesca	FvH4_6g36460 FvH4_6g36460 FvH4_6g36460
malus_domestica	MD09G1168900.v1.1 MD17G1157900.v1.1
prunus_persica	Prupe.3G027200_v2.0.a1 Prupe.3G027200_v2.0.a1
pyrus_communis	pycom09g08650
rosa_chinensis	RchiOBHm_Chr2g0148591
rosa_laevigata	RLG00000020353
rosa_roxburghii	Rroxscaffold_2G00098610
rosa_rugosa	Rorug02G0407400 Rorug02G0407500 Rorug02G0407600
rosa_samantha	Rh2AG466300 Rh2BG479400 Rh2CG452800 Rh2DG488200
rosa_wichuraiana	Rw2G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	198
AccII	CGCG	1 cut(s)	138
AciI	CCGC	1 cut(s)	196
AclWI	GGATC	4 cut(s)	168, 254, 764, 777
AcoI	YGGCCR	1 cut(s)	361
AcsI	RAATTY	2 cut(s)	222, 595
AfaI	GTAC	1 cut(s)	526
AfiI	CCNNNNNNNGG	2 cut(s)	218, 449
AflIII	ACRYGT	1 cut(s)	640
AgsI	TTSAA	4 cut(s)	227, 637, 873, 902
AjnI	CCWGG	4 cut(s)	103, 108, 463, 646
AluBI	AGCT	2 cut(s)	65, 587
AluI	AGCT	2 cut(s)	65, 587
Alw26I	GTCTC	1 cut(s)	844
AlwI	GGATC	4 cut(s)	168, 254, 764, 777
AlwNI	CAGNNNCTG	1 cut(s)	125
AoxI	GGCC	6 cut(s)	78, 106, 324, 361, 506, 649
ApeKI	GCWGC	5 cut(s)	113, 116, 536, 584, 922
ApoI	RAATTY	2 cut(s)	222, 595
AseI	ATTAAT	2 cut(s)	735, 746
Asp700I	GAANNNNTTC	1 cut(s)	436
AspLEI	GCGC	1 cut(s)	138
AspS9I	GGNCC	2 cut(s)	79, 650
AsuC2I	CCSGG	1 cut(s)	82
AsuHPI	GGTGA	2 cut(s)	60, 432
BalI	TGGCCA	1 cut(s)	363
BamHI	GGATCC	1 cut(s)	769
BanII	GRGCYC	1 cut(s)	880
BbsI	GAAGAC	1 cut(s)	198
BbvI	GCAGC	5 cut(s)	125, 128, 548, 596, 934
BccI	CCATC	1 cut(s)	847
BciT130I	CCWGG	4 cut(s)	105, 110, 465, 648
BclI	TGATCA	1 cut(s)	474
BcnI	CCSGG	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	844
BfaI	CTAG	3 cut(s)	33, 62, 863
BfmI	CTRYAG	2 cut(s)	534, 582
BglII	AGATCT	1 cut(s)	58
BisI	GCNGC	5 cut(s)	114, 117, 537, 585, 923
BlsI	GCNGC	5 cut(s)	115, 118, 538, 586, 924
Bme1390I	CCNGG	5 cut(s)	82, 105, 110, 465, 648
BmgT120I	GGNCC	2 cut(s)	79, 650
BmiI	GGNNCC	1 cut(s)	771
BmrFI	CCNGG	5 cut(s)	82, 105, 110, 465, 648
BmsI	GCATC	5 cut(s)	649, 660, 688, 717, 856
BoxI	GACNNNNGTC	1 cut(s)	305
BpiI	GAAGAC	1 cut(s)	198
BpmI	CTGGAG	2 cut(s)	87, 951
BpuEI	CTTGAG	1 cut(s)	331
BpuMI	CCSGG	1 cut(s)	82
BsaJI	CCNNGG	2 cut(s)	491, 969
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 449
Bse1I	ACTGG	4 cut(s)	443, 671, 771, 915
BseBI	CCWGG	4 cut(s)	105, 110, 465, 648
BseDI	CCNNGG	2 cut(s)	491, 969
BseGI	GGATG	3 cut(s)	675, 732, 842
BseLI	CCNNNNNNNGG	2 cut(s)	218, 449
BseMII	CTCAG	3 cut(s)	213, 716, 727
BseNI	ACTGG	4 cut(s)	443, 671, 771, 915
BseRI	GAGGAG	1 cut(s)	162
BseXI	GCAGC	5 cut(s)	125, 128, 548, 596, 934
BsgI	GTGCAG	1 cut(s)	941
Bsh1236I	CGCG	1 cut(s)	138
Bsh1285I	CGRYCG	1 cut(s)	158
BshFI	GGCC	6 cut(s)	80, 108, 326, 363, 508, 651
BsiEI	CGRYCG	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	82
BslI	CCNNNNNNNGG	2 cut(s)	218, 449
BsmAI	GTCTC	1 cut(s)	844
BsnI	GGCC	6 cut(s)	80, 108, 326, 363, 508, 651
Bsp1286I	GDGCHC	1 cut(s)	880
Bsp143I	GATC	6 cut(s)	58, 151, 160, 259, 474, 769
BspACI	CCGC	1 cut(s)	196
BspANI	GGCC	6 cut(s)	80, 108, 326, 363, 508, 651
BspCNI	CTCAG	3 cut(s)	212, 715, 726
BspFNI	CGCG	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	822
BspLI	GGNNCC	1 cut(s)	771
BspMAI	CTGCAG	2 cut(s)	538, 586
BspPI	GGATC	4 cut(s)	168, 254, 764, 777
BsrBI	CCGCTC	1 cut(s)	198
BsrI	ACTGG	4 cut(s)	443, 671, 771, 915
BssECI	CCNNGG	2 cut(s)	491, 969
BssMI	GATC	6 cut(s)	58, 151, 160, 259, 474, 769
BssT1I	CCWWGG	2 cut(s)	491, 969
Bst2UI	CCWGG	4 cut(s)	105, 110, 465, 648
Bst4CI	ACNGT	1 cut(s)	568
Bst6I	CTCTTC	1 cut(s)	486
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstC8I	GCNNGC	3 cut(s)	328, 416, 534
BstDEI	CTNAG	3 cut(s)	199, 702, 713
BstF5I	GGATG	3 cut(s)	675, 732, 842
BstFNI	CGCG	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	6 cut(s)	61, 154, 163, 262, 477, 772
BstMAI	GTCTC	1 cut(s)	844
BstMBI	GATC	6 cut(s)	58, 151, 160, 259, 474, 769
BstMCI	CGRYCG	1 cut(s)	158
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 514, 707, 875
BstNI	CCWGG	4 cut(s)	105, 110, 465, 648
BstNSI	RCATGY	2 cut(s)	644, 857
BstPAI	GACNNNNGTC	1 cut(s)	305
BstSCI	CCNGG	5 cut(s)	80, 103, 108, 463, 646
BstSFI	CTRYAG	2 cut(s)	534, 582
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	5 cut(s)	125, 128, 548, 596, 934
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	4 cut(s)	58, 160, 259, 769
BstXI	CCANNNNNNTGG	2 cut(s)	284, 976
BstYI	RGATCY	4 cut(s)	58, 160, 259, 769
BsuRI	GGCC	6 cut(s)	80, 108, 326, 363, 508, 651
BtsCI	GGATG	3 cut(s)	675, 732, 842
BtsI	GCAGTG	1 cut(s)	9
BtsIMutI	CAGTG	4 cut(s)	9, 450, 764, 922
Cac8I	GCNNGC	3 cut(s)	328, 416, 534
CaiI	CAGNNNCTG	1 cut(s)	125
CciI	TCATGA	1 cut(s)	822
CfoI	GCGC	1 cut(s)	138
Cfr13I	GGNCC	2 cut(s)	79, 650
Csp6I	GTAC	1 cut(s)	525
CviAII	CATG	7 cut(s)	359, 529, 641, 823, 847, 854, 976
CviQI	GTAC	1 cut(s)	525
DdeI	CTNAG	3 cut(s)	199, 702, 713
DpnI	GATC	6 cut(s)	60, 153, 162, 261, 476, 771
DpnII	GATC	6 cut(s)	58, 151, 160, 259, 474, 769
EaeI	YGGCCR	1 cut(s)	361
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
Eco130I	CCWWGG	2 cut(s)	491, 969
Eco24I	GRGCYC	1 cut(s)	880
Eco32I	GATATC	1 cut(s)	240
EcoRI	GAATTC	1 cut(s)	222
EcoRII	CCWGG	4 cut(s)	103, 108, 463, 646
EcoRV	GATATC	1 cut(s)	240
EcoT14I	CCWWGG	2 cut(s)	491, 969
EcoT38I	GRGCYC	1 cut(s)	880
ErhI	CCWWGG	2 cut(s)	491, 969
FaeI	CATG	7 cut(s)	362, 532, 644, 826, 850, 857, 979
FatI	CATG	7 cut(s)	358, 528, 640, 822, 846, 853, 975
FbaI	TGATCA	1 cut(s)	474
Fnu4HI	GCNGC	5 cut(s)	114, 117, 537, 585, 923
FokI	GGATG	3 cut(s)	682, 739, 829
FriOI	GRGCYC	1 cut(s)	880
Fsp4HI	GCNGC	5 cut(s)	114, 117, 537, 585, 923
FspBI	CTAG	3 cut(s)	33, 62, 863
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	5 cut(s)	114, 117, 537, 585, 923
GsuI	CTGGAG	2 cut(s)	87, 951
HaeIII	GGCC	6 cut(s)	80, 108, 326, 363, 508, 651
HapII	CCGG	1 cut(s)	82
HhaI	GCGC	1 cut(s)	138
Hin1II	CATG	7 cut(s)	362, 532, 644, 826, 850, 857, 979
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HinfI	GANTC	2 cut(s)	215, 301
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	2 cut(s)	60, 432
Hpy166II	GTNNAC	2 cut(s)	353, 440
Hpy188I	TCNGA	9 cut(s)	27, 160, 202, 237, 259, 322, 687, 697, 705
Hpy188III	TCNNGA	7 cut(s)	219, 227, 285, 298, 823, 873, 930
Hpy8I	GTNNAC	2 cut(s)	353, 440
HpyAV	CCTTC	2 cut(s)	426, 700
HpyCH4III	ACNGT	1 cut(s)	568
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 514, 707, 875
HpyF3I	CTNAG	3 cut(s)	199, 702, 713
Hsp92II	CATG	7 cut(s)	362, 532, 644, 826, 850, 857, 979
HspAI	GCGC	1 cut(s)	136
Ksp22I	TGATCA	1 cut(s)	474
Kzo9I	GATC	6 cut(s)	58, 151, 160, 259, 474, 769
LmnI	GCTCC	1 cut(s)	740
Lsp1109I	GCAGC	5 cut(s)	125, 128, 548, 596, 934
LweI	GCATC	5 cut(s)	649, 660, 688, 717, 856
MaeI	CTAG	3 cut(s)	33, 62, 863
MaeIII	GTNAC	1 cut(s)	562
MalI	GATC	6 cut(s)	60, 153, 162, 261, 476, 771
MbiI	CCGCTC	1 cut(s)	198
MboI	GATC	6 cut(s)	58, 151, 160, 259, 474, 769
MboII	GAAGA	5 cut(s)	155, 203, 473, 566, 890
MfeI	CAATTG	1 cut(s)	939
MflI	RGATCY	4 cut(s)	58, 160, 259, 769
MhlI	GDGCHC	1 cut(s)	880
MlsI	TGGCCA	1 cut(s)	363
MluCI	AATT	5 cut(s)	222, 385, 595, 732, 939
MluNI	TGGCCA	1 cut(s)	363
MlyI	GAGTC	1 cut(s)	295
MmeI	TCCRAC	2 cut(s)	138, 594
Mox20I	TGGCCA	1 cut(s)	363
MroXI	GAANNNNTTC	1 cut(s)	436
MscI	TGGCCA	1 cut(s)	363
MseI	TTAA	3 cut(s)	735, 746, 791
MslI	CAYNNNNRTG	1 cut(s)	755
Msp20I	TGGCCA	1 cut(s)	363
MspA1I	CMGCKG	1 cut(s)	587
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	5 cut(s)	82, 105, 110, 465, 648
MunI	CAATTG	1 cut(s)	939
MvaI	CCWGG	4 cut(s)	105, 110, 465, 648
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	4 cut(s)	125, 514, 707, 875
NciI	CCSGG	1 cut(s)	82
NdeII	GATC	6 cut(s)	58, 151, 160, 259, 474, 769
NlaIII	CATG	7 cut(s)	362, 532, 644, 826, 850, 857, 979
NlaIV	GGNNCC	1 cut(s)	771
NmeAIII	GCCGAG	1 cut(s)	56
NspI	RCATGY	2 cut(s)	644, 857
PagI	TCATGA	1 cut(s)	822
PciI	ACATGT	1 cut(s)	640
PdmI	GAANNNNTTC	1 cut(s)	436
PfeI	GAWTC	1 cut(s)	215
PkrI	GCNGC	5 cut(s)	115, 118, 538, 586, 924
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
PscI	ACATGT	1 cut(s)	640
PshAI	GACNNNNGTC	1 cut(s)	305
PshBI	ATTAAT	2 cut(s)	735, 746
Psp6I	CCWGG	4 cut(s)	103, 108, 463, 646
PspGI	CCWGG	4 cut(s)	103, 108, 463, 646
PspN4I	GGNNCC	1 cut(s)	771
PspPI	GGNCC	2 cut(s)	79, 650
PstI	CTGCAG	2 cut(s)	538, 586
PstNI	CAGNNNCTG	1 cut(s)	125
PsuI	RGATCY	4 cut(s)	58, 160, 259, 769
PvuII	CAGCTG	1 cut(s)	587
RsaI	GTAC	1 cut(s)	526
RsaNI	GTAC	1 cut(s)	525
RseI	CAYNNNNRTG	1 cut(s)	755
SaqAI	TTAA	3 cut(s)	735, 746, 791
SatI	GCNGC	5 cut(s)	114, 117, 537, 585, 923
Sau3AI	GATC	6 cut(s)	58, 151, 160, 259, 474, 769
Sau96I	GGNCC	2 cut(s)	79, 650
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	5 cut(s)	82, 105, 110, 465, 648
SduI	GDGCHC	1 cut(s)	880
SetI	ASST	8 cut(s)	67, 73, 490, 589, 757, 791, 838, 975
SfaNI	GCATC	5 cut(s)	649, 660, 688, 717, 856
SfcI	CTRYAG	2 cut(s)	534, 582
SmiMI	CAYNNNNRTG	1 cut(s)	755
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
Sse9I	AATT	5 cut(s)	222, 385, 595, 732, 939
SsiI	CCGC	1 cut(s)	196
SspMI	CTAG	3 cut(s)	33, 62, 863
StyD4I	CCNGG	5 cut(s)	80, 103, 108, 463, 646
StyI	CCWWGG	2 cut(s)	491, 969
TaaI	ACNGT	1 cut(s)	568
TaqI	TCGA	1 cut(s)	299
TaqII	GACCGA	1 cut(s)	144
TasI	AATT	5 cut(s)	222, 385, 595, 732, 939
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	3 cut(s)	735, 746, 791
Tru9I	TTAA	3 cut(s)	735, 746, 791
TscAI	CASTG	4 cut(s)	16, 450, 771, 922
TseI	GCWGC	5 cut(s)	113, 116, 536, 584, 922
TspDTI	ATGAA	3 cut(s)	398, 810, 811
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	4 cut(s)	16, 450, 771, 922
VspI	ATTAAT	2 cut(s)	735, 746
XapI	RAATTY	2 cut(s)	222, 595
XceI	RCATGY	2 cut(s)	644, 857
XmnI	GAANNNNTTC	1 cut(s)	436
XspI	CTAG	3 cut(s)	33, 62, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.