FvH4_6g36460

Organic cation carnitine transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
28687695 .. 28692095
4401 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36460.t5

Sequence Viewer

Length: 1488 bp
ATGGGAGATGGAAGCCAGGAATACACTGTCGATGACGCTCTTGTCTCCATGGGGTTTGGAAAGTTCCAACTTCTTGTGCTTGCTTATGCCGGCATGGGTTGGATCTCAGAAGCAATGGAGATGATGCTACTTTCGTTTGTAGGACCAGCAGTTCAGTCTGCTTGGGGTCTTTCTTCCAAACAAGAAAGTTTCATAACCAGTGTGGTGTTTACTGGAATGCTGGTTGGAGCATACACATGGGGCATTGTCTCAGATAACTACGGACGCAGGAAAGGATTCCTCATTACAGCCACGATTACATCTGGTGCTGGTTTTCTAAGTGCTTTTTCCCCTAATTATACATCCTTGCTCATTCTGCGTTGTTTGGTTGGTGTTGGCTTGGGAGGTGGTCCAGTACTGTCATCCTGGTTTCTGGAGTTCATTCCTGCTCCTAGCAGAGGCACCTGGATGGTTGTCTTTTCAGCTTTCTGGACTGTTGGAACAATTCTTGAGGCTTCACTTGCATGGTTTGTCATGCCAACACTGGGTTGGAGGTGGCTACTTGCACTCTCTGCACTCCCTTCTTCACTTCTTCTTATATTCTATTGGGTAGCACCTGAATCACCAAGGTATTTATGCTTAAAAGGTAGAACAACTGAGGCAATCACTATTTTGGAGAAAGTAGCAAGACTGAATGGATCAAAACTCCCTTCTGGAATTCTTGTTTCAGATTTAACAGTAGAGTTATCTGAAAAGAGTACTCCTTCGGAAGATACAAGTTTAATCTCTCCAAGGACAAATGAAGATGCGAGTCCCAAGGAGATGGATTCTAATATGGGGGGCATCTCTTCACTGTTAATGCTTCTCTCCCCAAACTTAGTCAGGTCTACCTTGCTATTATGGGTAGTATTTTTTGGGAATGCTTTTTCATATTATGGCCTGGTGCTTCTGACGTCTGAGTTGAATGGACATAGCCAATGTGTGCCAACTGAAGTAAAGTCAGTCGCGTCTCAGGATATCAACTACAGAAATATTTTCATTGCTAGTTTTGCAGAGTTACCAGGGCTGATCATATCTGCTGCCACGGTGGACAGACTGGGTCGTAAGCTTTCGATGTCAGGCATGTTCTTCCTGTGCTGCCTTTTTCTACTACCATTGGTAGTCCATCAGCCTGAGGGCTTGACCACTGCCCTTCTGTTTGGAGCTCGTATATGCATCACAGCTACCTTCACGATAGTCTACATATATGCTCCTGAGATATACCCAACGTCAGTCCGAACAACTGGTGTTGGAGTTGGAAGCGCAATGGGAAGAATCGGTGGAATGATATGTCCTCTTGTGGCTGTAGCTTTGGTACACGGGTGTCATCAAACAGCATCCATTCTGCTGTTTGAGGTTGTAATTCTTCTTTCAGGAATATGTGTAATGCTTTTCCCATTTGAAACCAAGGGCCGGGAACTGAGTGATAGTGTATCATCTAGCTCAAAGCCGATGAATGCTTTAATATGA

Protein Analysis

496

Amino Acids

53.35

Weight (kDa)

5.7

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 35 - 311 1.7e-23 Major Facilitator Superfamily
Sugar_tr PF00083 58 - 481 8.6e-44 Sugar (and other) transporter
MFS_1 PF07690 340 - 477 9.1e-11 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 41
AatII GACGTC 1 cut(s) 935
AccB1I GGYRCC 1 cut(s) 440
AccI GTMKAC 2 cut(s) 866, 1218
AccII CGCG 1 cut(s) 986
AclWI GGATC 2 cut(s) 110, 685
AcsI RAATTY 1 cut(s) 696
AcuI CTGAAG 1 cut(s) 990
AcyI GRCGYC 1 cut(s) 932
AfaI GTAC 3 cut(s) 396, 739, 1335
AfiI CCNNNNNNNGG 3 cut(s) 437, 524, 1431
AgsI TTSAA 2 cut(s) 943, 1421
AjnI CCWGG 5 cut(s) 15, 404, 443, 918, 1039
AloI GAACNNNNNNTCC 2 cut(s) 135, 167
AluBI AGCT 6 cut(s) 464, 1087, 1184, 1202, 1328, 1461
AluI AGCT 6 cut(s) 464, 1087, 1184, 1202, 1328, 1461
Alw21I GWGCWC 1 cut(s) 1186
Alw26I GTCTC 3 cut(s) 49, 253, 993
AlwI GGATC 2 cut(s) 110, 685
AoxI GGCC 2 cut(s) 916, 1429
ApeKI GCWGC 2 cut(s) 1058, 1116
ApoI RAATTY 1 cut(s) 696
Asp700I GAANNNNTTC 1 cut(s) 275
AspLEI GCGC 1 cut(s) 1283
AspS9I GGNCC 3 cut(s) 143, 389, 1429
AsuC2I CCSGG 1 cut(s) 1433
AsuHPI GGTGA 1 cut(s) 594
AvaII GGWCC 2 cut(s) 143, 389
AxyI CCTNAGG 1 cut(s) 1152
BaeI ACNNNNGTAYC 2 cut(s) 1325, 1358
BanI GGYRCC 1 cut(s) 440
BanII GRGCYC 1 cut(s) 1186
Bbv12I GWGCWC 1 cut(s) 1186
BbvI GCAGC 2 cut(s) 1045, 1103
BccI CCATC 4 cut(s) 2, 442, 796, 1152
BciT130I CCWGG 5 cut(s) 17, 406, 445, 920, 1041
BclI TGATCA 1 cut(s) 1047
BcnI CCSGG 1 cut(s) 1433
BcoDI GTCTC 3 cut(s) 49, 253, 993
BfaI CTAG 3 cut(s) 432, 1023, 1458
BfmI CTRYAG 2 cut(s) 1003, 1323
BisI GCNGC 2 cut(s) 1059, 1117
BlsI GCNGC 2 cut(s) 1060, 1118
BmcAI AGTACT 2 cut(s) 396, 739
Bme1390I CCNGG 6 cut(s) 17, 406, 445, 920, 1041, 1433
Bme18I GGWCC 2 cut(s) 143, 389
BmgT120I GGNCC 3 cut(s) 143, 389, 1429
BmiI GGNNCC 1 cut(s) 442
BmrFI CCNGG 6 cut(s) 17, 406, 445, 920, 1041, 1433
BmrI ACTGGG 2 cut(s) 533, 1085
BmsI GCATC 5 cut(s) 114, 775, 831, 1203, 1364
BmuI ACTGGG 2 cut(s) 533, 1085
BpmI CTGGAG 1 cut(s) 434
BpuEI CTTGAG 1 cut(s) 509
BpuMI CCSGG 1 cut(s) 1433
BsaHI GRCGYC 1 cut(s) 932
BsaJI CCNNGG 7 cut(s) 48, 605, 770, 795, 1040, 1062, 1425
Bsc4I CCNNNNNNNGG 3 cut(s) 437, 524, 1431
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 6 cut(s) 198, 217, 392, 528, 1080, 1267
Bse21I CCTNAGG 1 cut(s) 1152
Bse3DI GCAATG 3 cut(s) 120, 1017, 1290
BseBI CCWGG 5 cut(s) 17, 406, 445, 920, 1041
BseDI CCNNGG 7 cut(s) 48, 605, 770, 795, 1040, 1062, 1425
BseGI GGATG 4 cut(s) 341, 401, 453, 1355
BseLI CCNNNNNNNGG 3 cut(s) 437, 524, 1431
BseMI GCAATG 3 cut(s) 120, 1017, 1290
BseMII CTCAG 8 cut(s) 120, 264, 627, 927, 1004, 1143, 1224, 1430
BseNI ACTGG 6 cut(s) 198, 217, 392, 528, 1080, 1267
BseXI GCAGC 2 cut(s) 1045, 1103
BsgI GTGCAG 1 cut(s) 537
Bsh1236I CGCG 1 cut(s) 986
BshFI GGCC 2 cut(s) 918, 1431
BshNI GGYRCC 1 cut(s) 440
BsiHKAI GWGCWC 1 cut(s) 1186
BsiSI CCGG 2 cut(s) 90, 1432
BslFI GGGAC 1 cut(s) 777
BslI CCNNNNNNNGG 3 cut(s) 437, 524, 1431
BsmAI GTCTC 3 cut(s) 49, 253, 993
BsmBI CGTCTC 1 cut(s) 993
BsmFI GGGAC 1 cut(s) 777
BsmI GAATGC 3 cut(s) 222, 904, 1480
BsnI GGCC 2 cut(s) 918, 1431
Bsp1286I GDGCHC 1 cut(s) 1186
Bsp143I GATC 3 cut(s) 102, 677, 1047
Bsp19I CCATGG 1 cut(s) 48
BspANI GGCC 2 cut(s) 918, 1431
BspCNI CTCAG 8 cut(s) 119, 263, 628, 928, 1003, 1144, 1225, 1431
BspFNI CGCG 1 cut(s) 986
BspLI GGNNCC 1 cut(s) 442
BspPI GGATC 2 cut(s) 110, 685
BspT107I GGYRCC 1 cut(s) 440
BsrDI GCAATG 3 cut(s) 120, 1017, 1290
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 6 cut(s) 198, 217, 392, 528, 1080, 1267
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 7 cut(s) 48, 605, 770, 795, 1040, 1062, 1425
BssMI GATC 3 cut(s) 102, 677, 1047
BssNI GRCGYC 1 cut(s) 932
BssT1I CCWWGG 5 cut(s) 48, 605, 770, 795, 1425
Bst2UI CCWGG 5 cut(s) 17, 406, 445, 920, 1041
Bst4CI ACNGT 6 cut(s) 28, 399, 475, 718, 834, 1066
Bst6I CTCTTC 1 cut(s) 832
BstACI GRCGYC 1 cut(s) 932
BstAPI GCANNNNNTGC 1 cut(s) 551
BstC8I GCNNGC 2 cut(s) 81, 91
BstDSI CCRYGG 2 cut(s) 48, 1062
BstENI CCTNNNNNAGG 1 cut(s) 435
BstF5I GGATG 4 cut(s) 341, 401, 453, 1355
BstFNI CGCG 1 cut(s) 986
BstHHI GCGC 1 cut(s) 1283
BstKTI GATC 3 cut(s) 105, 680, 1050
BstMAI GTCTC 3 cut(s) 49, 253, 993
BstMBI GATC 3 cut(s) 102, 677, 1047
BstMWI GCNNNNNNNGC 4 cut(s) 355, 500, 551, 1028
BstNI CCWGG 5 cut(s) 17, 406, 445, 920, 1041
BstNSI RCATGY 1 cut(s) 1105
BstSCI CCNGG 6 cut(s) 15, 404, 443, 918, 1039, 1431
BstSFI CTRYAG 2 cut(s) 1003, 1323
BstUI CGCG 1 cut(s) 986
BstV1I GCAGC 2 cut(s) 1045, 1103
BstX2I RGATCY 1 cut(s) 102
BstXI CCANNNNNNTGG 1 cut(s) 802
BstYI RGATCY 1 cut(s) 102
Bsu36I CCTNAGG 1 cut(s) 1152
BsuRI GGCC 2 cut(s) 918, 1431
BtgI CCRYGG 2 cut(s) 48, 1062
BtsCI GGATG 4 cut(s) 341, 401, 453, 1355
BtsI GCAGTG 1 cut(s) 1164
BtsIMutI CAGTG 5 cut(s) 24, 205, 521, 830, 1164
Cac8I GCNNGC 2 cut(s) 81, 91
CfoI GCGC 1 cut(s) 1283
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 3 cut(s) 143, 389, 1429
CseI GACGC 3 cut(s) 44, 273, 975
Csp6I GTAC 3 cut(s) 395, 738, 1334
CviAII CATG 6 cut(s) 49, 94, 237, 504, 514, 1102
CviQI GTAC 3 cut(s) 395, 738, 1334
DpnI GATC 3 cut(s) 104, 679, 1049
DpnII GATC 3 cut(s) 102, 677, 1047
DrdI GACNNNNNNGTC 1 cut(s) 41
DseDI GACNNNNNNGTC 1 cut(s) 41
Eam1104I CTCTTC 1 cut(s) 832
EarI CTCTTC 1 cut(s) 832
Ecl136II GAGCTC 1 cut(s) 1184
Eco130I CCWWGG 5 cut(s) 48, 605, 770, 795, 1425
Eco24I GRGCYC 1 cut(s) 1186
Eco32I GATATC 1 cut(s) 997
Eco47I GGWCC 2 cut(s) 143, 389
Eco53kI GAGCTC 1 cut(s) 1184
Eco57I CTGAAG 1 cut(s) 990
Eco81I CCTNAGG 1 cut(s) 1152
EcoICRI GAGCTC 1 cut(s) 1184
EcoNI CCTNNNNNAGG 1 cut(s) 435
EcoRI GAATTC 1 cut(s) 696
EcoRII CCWGG 5 cut(s) 15, 404, 443, 918, 1039
EcoRV GATATC 1 cut(s) 997
EcoT14I CCWWGG 5 cut(s) 48, 605, 770, 795, 1425
EcoT22I ATGCAT 1 cut(s) 1196
EcoT38I GRGCYC 1 cut(s) 1186
ErhI CCWWGG 5 cut(s) 48, 605, 770, 795, 1425
Esp3I CGTCTC 1 cut(s) 993
FaeI CATG 6 cut(s) 52, 97, 240, 507, 517, 1105
FaqI GGGAC 1 cut(s) 777
FatI CATG 6 cut(s) 48, 93, 236, 503, 513, 1101
FbaI TGATCA 1 cut(s) 1047
FblI GTMKAC 2 cut(s) 866, 1218
Fnu4HI GCNGC 2 cut(s) 1059, 1117
FokI GGATG 4 cut(s) 328, 388, 460, 1342
FriOI GRGCYC 1 cut(s) 1186
Fsp4HI GCNGC 2 cut(s) 1059, 1117
FspBI CTAG 3 cut(s) 432, 1023, 1458
GlaI GCGC 1 cut(s) 1282
GluI GCNGC 2 cut(s) 1059, 1117
GsuI CTGGAG 1 cut(s) 434
HaeIII GGCC 2 cut(s) 918, 1431
HapII CCGG 2 cut(s) 90, 1432
HgaI GACGC 3 cut(s) 44, 273, 975
HhaI GCGC 1 cut(s) 1283
Hin1I GRCGYC 1 cut(s) 932
Hin1II CATG 6 cut(s) 52, 97, 240, 507, 517, 1105
Hin6I GCGC 1 cut(s) 1281
HinP1I GCGC 1 cut(s) 1281
HindIII AAGCTT 1 cut(s) 1085
HinfI GANTC 5 cut(s) 276, 599, 790, 806, 1293
HpaII CCGG 2 cut(s) 90, 1432
HphI GGTGA 1 cut(s) 594
Hpy166II GTNNAC 5 cut(s) 210, 867, 1069, 1219, 1336
Hpy188I TCNGA 8 cut(s) 109, 253, 709, 730, 748, 930, 937, 1256
Hpy188III TCNNGA 8 cut(s) 413, 469, 488, 693, 992, 1210, 1232, 1392
Hpy8I GTNNAC 5 cut(s) 210, 867, 1069, 1219, 1336
HpyAV CCTTC 5 cut(s) 570, 699, 753, 1181, 1216
HpyCH4III ACNGT 6 cut(s) 28, 399, 475, 718, 834, 1066
HpyCH4IV ACGT 2 cut(s) 932, 1247
HpyCH4V TGCA 5 cut(s) 503, 545, 554, 1031, 1194
HpyF10VI GCNNNNNNNGC 4 cut(s) 355, 500, 551, 1028
HpySE526I ACGT 2 cut(s) 932, 1247
Hsp92I GRCGYC 1 cut(s) 932
Hsp92II CATG 6 cut(s) 52, 97, 240, 507, 517, 1105
HspAI GCGC 1 cut(s) 1281
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
Ksp22I TGATCA 1 cut(s) 1047
Kzo9I GATC 3 cut(s) 102, 677, 1047
LmnI GCTCC 4 cut(s) 227, 433, 1181, 1234
Lsp1109I GCAGC 2 cut(s) 1045, 1103
LweI GCATC 5 cut(s) 114, 775, 831, 1203, 1364
MaeI CTAG 3 cut(s) 432, 1023, 1458
MaeII ACGT 2 cut(s) 932, 1247
MaeIII GTNAC 1 cut(s) 1035
MalI GATC 3 cut(s) 104, 679, 1049
MboI GATC 3 cut(s) 102, 677, 1047
MboII GAAGA 9 cut(s) 165, 555, 563, 761, 794, 819, 1099, 1302, 1376
MflI RGATCY 1 cut(s) 102
MhlI GDGCHC 1 cut(s) 1186
MluCI AATT 4 cut(s) 334, 483, 696, 1380
MlyI GAGTC 1 cut(s) 799
MmeI TCCRAC 7 cut(s) 80, 91, 205, 457, 509, 1249, 1255
MnlI CCTC 9 cut(s) 290, 377, 431, 484, 525, 631, 1147, 1323, 1366
Mph1103I ATGCAT 1 cut(s) 1196
MroNI GCCGGC 1 cut(s) 89
MroXI GAANNNNTTC 1 cut(s) 275
MseI TTAA 5 cut(s) 620, 713, 761, 836, 1481
MslI CAYNNNNRTG 3 cut(s) 235, 446, 502
MspI CCGG 2 cut(s) 90, 1432
MspR9I CCNGG 6 cut(s) 17, 406, 445, 920, 1041, 1433
Mva1269I GAATGC 3 cut(s) 222, 904, 1480
MvaI CCWGG 5 cut(s) 17, 406, 445, 920, 1041
MvnI CGCG 1 cut(s) 986
MwoI GCNNNNNNNGC 4 cut(s) 355, 500, 551, 1028
NaeI GCCGGC 1 cut(s) 91
NciI CCSGG 1 cut(s) 1433
NcoI CCATGG 1 cut(s) 48
NdeII GATC 3 cut(s) 102, 677, 1047
NgoMIV GCCGGC 1 cut(s) 89
NlaIII CATG 6 cut(s) 52, 97, 240, 507, 517, 1105
NlaIV GGNNCC 1 cut(s) 442
NsiI ATGCAT 1 cut(s) 1196
NspI RCATGY 1 cut(s) 1105
PctI GAATGC 3 cut(s) 222, 904, 1480
PdiI GCCGGC 1 cut(s) 91
PdmI GAANNNNTTC 1 cut(s) 275
PfeI GAWTC 4 cut(s) 276, 599, 806, 1293
PflFI GACNNNGTC 1 cut(s) 1077
PkrI GCNGC 2 cut(s) 1060, 1118
PleI GAGTC 1 cut(s) 798
PpsI GAGTC 1 cut(s) 798
Psp124BI GAGCTC 1 cut(s) 1186
Psp6I CCWGG 5 cut(s) 15, 404, 443, 918, 1039
PspGI CCWGG 5 cut(s) 15, 404, 443, 918, 1039
PspN4I GGNNCC 1 cut(s) 442
PspPI GGNCC 3 cut(s) 143, 389, 1429
PsuI RGATCY 1 cut(s) 102
PsyI GACNNNGTC 1 cut(s) 1077
RsaI GTAC 3 cut(s) 396, 739, 1335
RsaNI GTAC 3 cut(s) 395, 738, 1334
RseI CAYNNNNRTG 3 cut(s) 235, 446, 502
SacI GAGCTC 1 cut(s) 1186
SaqAI TTAA 5 cut(s) 620, 713, 761, 836, 1481
SatI GCNGC 2 cut(s) 1059, 1117
Sau3AI GATC 3 cut(s) 102, 677, 1047
Sau96I GGNCC 3 cut(s) 143, 389, 1429
ScaI AGTACT 2 cut(s) 396, 739
SchI GAGTC 1 cut(s) 799
ScrFI CCNGG 6 cut(s) 17, 406, 445, 920, 1041, 1433
SduI GDGCHC 1 cut(s) 1186
SfaNI GCATC 5 cut(s) 114, 775, 831, 1203, 1364
SfcI CTRYAG 2 cut(s) 1003, 1323
SinI GGWCC 2 cut(s) 143, 389
SmiMI CAYNNNNRTG 3 cut(s) 235, 446, 502
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
Sse9I AATT 4 cut(s) 334, 483, 696, 1380
SspI AATATT 1 cut(s) 1012
SspMI CTAG 3 cut(s) 432, 1023, 1458
SstI GAGCTC 1 cut(s) 1186
StyD4I CCNGG 6 cut(s) 15, 404, 443, 918, 1039, 1431
StyI CCWWGG 5 cut(s) 48, 605, 770, 795, 1425
TaaI ACNGT 6 cut(s) 28, 399, 475, 718, 834, 1066
TaiI ACGT 2 cut(s) 935, 1250
TaqI TCGA 2 cut(s) 30, 1091
TasI AATT 4 cut(s) 334, 483, 696, 1380
TatI WGTACW 2 cut(s) 394, 737
TfiI GAWTC 4 cut(s) 276, 599, 806, 1293
Tru1I TTAA 5 cut(s) 620, 713, 761, 836, 1481
Tru9I TTAA 5 cut(s) 620, 713, 761, 836, 1481
TscAI CASTG 5 cut(s) 31, 205, 528, 837, 1171
TseI GCWGC 2 cut(s) 1058, 1116
TspDTI ATGAA 6 cut(s) 181, 409, 795, 897, 1006, 1487
TspGWI ACGGA 1 cut(s) 276
TspRI CASTG 5 cut(s) 31, 205, 528, 837, 1171
Tth111I GACNNNGTC 1 cut(s) 1077
VpaK11BI GGWCC 2 cut(s) 143, 389
XagI CCTNNNNNAGG 1 cut(s) 435
XapI RAATTY 1 cut(s) 696
XceI RCATGY 1 cut(s) 1105
XcmI CCANNNNNNNNNTGG 1 cut(s) 525
XmiI GTMKAC 2 cut(s) 866, 1218
XmnI GAANNNNTTC 1 cut(s) 275
XspI CTAG 3 cut(s) 432, 1023, 1458
ZraI GACGTC 1 cut(s) 933
ZrmI AGTACT 2 cut(s) 396, 739
Zsp2I ATGCAT 1 cut(s) 1196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.