pycom17g15920

protein At3g15000, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0020894
Physical Location & Seq
Forward (+)
14222456 .. 14223843
1388 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 561 bp
ATGCGATCAAGCATTGGGAGTACGCCGTTAAGTCTAACAGCCACGTTTCTCCGGCGTCACCGTTTCTCAAATCAGCTGTCGTGTACTCTCTTTCCATCTTCGCCCTTCTCGTCGTCTTCTTCAGCTCCGAGAAGCTCCGCCGACGACTCGGCCAAGGACTCGGCGGGCAGTAAGTTGACTCGGTTGGCGACGGTGGTGGAGGGCTGCGACTACGAGCACTGGCTCGTTGTCACGGAGCCTCCTAAGGGTTACCCACTTCGCGACGAGATCATCAGTGGCTACATCCAAACCCTAGCCACCGCCCTCGGAAGTGAAGAGGAGGCAAAGAAGTCAATTTACTCTGTTTCGACAAAGTACTACTTTGCATTTGGCTGCAAAGTCCCGGAGGATTTGACTTTAAAGATAAAATCTCTGCCTAATGTGAGGTGGGTTCTCCCAGATTCTTACTTATGTCATGGTGAAAATGACTATGGAGGAGAACCTTTAGTTGAAGGGGTTGCTGTTCCATATGATGAAAAGTATCACGCAGACTGGGTGCGTGACGAAAAATTCAAGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

20.62

Weight (kDa)

5.82

Isoelectric Point (pI)

57.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORF_dom PF21864 71 - 161 8.6e-35 Multiple organellar RNA editing factor 1, MORF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020894)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72530 AT1G72530
prunus_persica Prupe.3G039400_v2.0.a1 Prupe.3G039400_v2.0.a1
pyrus_communis pycom17g15920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 261
AciI CCGC 3 cut(s) 138, 164, 300
AcoI YGGCCR 1 cut(s) 150
AcsI RAATTY 1 cut(s) 548
AcuI CTGAAG 1 cut(s) 105
AcyI GRCGYC 1 cut(s) 55
AfaI GTAC 3 cut(s) 22, 85, 356
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 2 cut(s) 491, 553
AluBI AGCT 3 cut(s) 76, 125, 135
AluI AGCT 3 cut(s) 76, 125, 135
Alw21I GWGCWC 1 cut(s) 219
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 2 cut(s) 204, 372
ApoI RAATTY 1 cut(s) 548
ArsI GACNNNNNNTTYG 2 cut(s) 62, 94
AsuC2I CCSGG 1 cut(s) 383
AsuHPI GGTGA 2 cut(s) 50, 470
AxyI CCTNAGG 1 cut(s) 243
BarI GAAGNNNNNNTAC 2 cut(s) 320, 352
BbsI GAAGAC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 2 cut(s) 191, 359
BccI CCATC 1 cut(s) 103
BceAI ACGGC 1 cut(s) 10
BcnI CCSGG 1 cut(s) 383
BfaI CTAG 1 cut(s) 293
BisI GCNGC 2 cut(s) 205, 373
BlsI GCNGC 2 cut(s) 206, 374
BmcAI AGTACT 1 cut(s) 356
Bme1390I CCNGG 1 cut(s) 383
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 1 cut(s) 383
BmrI ACTGGG 1 cut(s) 541
BmuI ACTGGG 1 cut(s) 541
BpiI GAAGAC 1 cut(s) 108
BpuMI CCSGG 1 cut(s) 383
BsaHI GRCGYC 1 cut(s) 55
BsaJI CCNNGG 2 cut(s) 153, 304
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse1I ACTGG 2 cut(s) 224, 536
Bse21I CCTNAGG 1 cut(s) 243
BseDI CCNNGG 2 cut(s) 153, 304
BseGI GGATG 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 245
BseNI ACTGG 2 cut(s) 224, 536
BseRI GAGGAG 2 cut(s) 332, 489
BseXI GCAGC 2 cut(s) 191, 359
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 219
BsiSI CCGG 2 cut(s) 52, 383
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 365
BsnI GGCC 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 2 cut(s) 5, 267
Bsp68I TCGCGA 1 cut(s) 261
BspACI CCGC 3 cut(s) 138, 164, 300
BspANI GGCC 1 cut(s) 152
BspFNI CGCG 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 237
BsrI ACTGG 2 cut(s) 224, 536
BssECI CCNNGG 2 cut(s) 153, 304
BssMI GATC 2 cut(s) 5, 267
BssNI GRCGYC 1 cut(s) 55
BssT1I CCWWGG 1 cut(s) 153
Bst4CI ACNGT 2 cut(s) 62, 193
Bst6I CTCTTC 1 cut(s) 309
BstACI GRCGYC 1 cut(s) 55
BstC8I GCNNGC 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 243
BstEII GGTNACC 1 cut(s) 248
BstF5I GGATG 1 cut(s) 282
BstFNI CGCG 1 cut(s) 261
BstKTI GATC 2 cut(s) 8, 270
BstMBI GATC 2 cut(s) 5, 267
BstPI GGTNACC 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 381
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 2 cut(s) 191, 359
BstV2I GAAGAC 1 cut(s) 108
Bsu36I CCTNAGG 1 cut(s) 243
BsuRI GGCC 1 cut(s) 152
BtsCI GGATG 1 cut(s) 282
BtsIMutI CAGTG 2 cut(s) 217, 280
BtuMI TCGCGA 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 166
CseI GACGC 1 cut(s) 44
Csp6I GTAC 3 cut(s) 21, 84, 355
CviAII CATG 1 cut(s) 455
CviQI GTAC 3 cut(s) 21, 84, 355
DdeI CTNAG 1 cut(s) 243
DpnI GATC 2 cut(s) 7, 269
DpnII GATC 2 cut(s) 5, 267
DraI TTTAAA 1 cut(s) 399
EaeI YGGCCR 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
EciI GGCGGA 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 105
Eco81I CCTNAGG 1 cut(s) 243
Eco91I GGTNACC 1 cut(s) 248
EcoO65I GGTNACC 1 cut(s) 248
EcoT14I CCWWGG 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 1 cut(s) 458
FaiI YATR 5 cut(s) 451, 456, 471, 508, 510
FalI AAGNNNNNCTT 2 cut(s) 344, 376
FaqI GGGAC 1 cut(s) 365
FatI CATG 1 cut(s) 454
FauI CCCGC 1 cut(s) 157
FauNDI CATATG 1 cut(s) 508
Fnu4HI GCNGC 2 cut(s) 205, 373
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 2 cut(s) 205, 373
FspBI CTAG 1 cut(s) 293
GluI GCNGC 2 cut(s) 205, 373
HaeIII GGCC 1 cut(s) 152
HapII CCGG 2 cut(s) 52, 383
HgaI GACGC 1 cut(s) 44
Hin1I GRCGYC 1 cut(s) 55
Hin1II CATG 1 cut(s) 458
HincII GTYRAC 1 cut(s) 177
HindII GTYRAC 1 cut(s) 177
HinfI GANTC 4 cut(s) 146, 158, 178, 440
HpaII CCGG 2 cut(s) 52, 383
HphI GGTGA 2 cut(s) 50, 470
Hpy166II GTNNAC 2 cut(s) 84, 177
Hpy188I TCNGA 2 cut(s) 129, 308
Hpy188III TCNNGA 1 cut(s) 260
Hpy8I GTNNAC 2 cut(s) 84, 177
Hpy99I CGWCG 4 cut(s) 115, 146, 193, 266
HpyAV CCTTC 2 cut(s) 115, 485
HpyCH4III ACNGT 2 cut(s) 62, 193
HpyCH4IV ACGT 1 cut(s) 44
HpyCH4V TGCA 2 cut(s) 365, 375
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 1 cut(s) 44
Hsp92I GRCGYC 1 cut(s) 55
Hsp92II CATG 1 cut(s) 458
Kzo9I GATC 2 cut(s) 5, 267
LmnI GCTCC 3 cut(s) 130, 140, 235
LpnPI CCDG 5 cut(s) 65, 205, 396, 450, 517
Lsp1109I GCAGC 2 cut(s) 191, 359
MaeI CTAG 1 cut(s) 293
MaeII ACGT 1 cut(s) 44
MaeIII GTNAC 4 cut(s) 56, 229, 248, 539
MalI GATC 2 cut(s) 7, 269
MboI GATC 2 cut(s) 5, 267
MboII GAAGA 4 cut(s) 90, 108, 111, 326
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 2 cut(s) 333, 548
MlyI GAGTC 3 cut(s) 140, 152, 172
MnlI CCTC 8 cut(s) 193, 249, 310, 313, 314, 379, 417, 467
MseI TTAA 3 cut(s) 29, 398, 559
MspA1I CMGCKG 1 cut(s) 76
MspI CCGG 2 cut(s) 52, 383
MspR9I CCNGG 1 cut(s) 383
MvnI CGCG 1 cut(s) 261
NciI CCSGG 1 cut(s) 383
NdeI CATATG 1 cut(s) 508
NdeII GATC 2 cut(s) 5, 267
NlaIII CATG 1 cut(s) 458
NlaIV GGNNCC 1 cut(s) 237
NmeAIII GCCGAG 2 cut(s) 128, 140
NmuCI GTSAC 3 cut(s) 56, 229, 539
NruI TCGCGA 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 107
PfeI GAWTC 1 cut(s) 440
PfoI TCCNGGA 1 cut(s) 381
PkrI GCNGC 2 cut(s) 206, 374
PleI GAGTC 3 cut(s) 140, 152, 172
PpsI GAGTC 3 cut(s) 140, 152, 172
PspEI GGTNACC 1 cut(s) 248
PspN4I GGNNCC 1 cut(s) 237
PvuII CAGCTG 1 cut(s) 76
RruI TCGCGA 1 cut(s) 261
RsaI GTAC 3 cut(s) 22, 85, 356
RsaNI GTAC 3 cut(s) 21, 84, 355
SaqAI TTAA 3 cut(s) 29, 398, 559
SatI GCNGC 2 cut(s) 205, 373
Sau3AI GATC 2 cut(s) 5, 267
ScaI AGTACT 1 cut(s) 356
SchI GAGTC 3 cut(s) 140, 152, 172
ScrFI CCNGG 1 cut(s) 383
SduI GDGCHC 1 cut(s) 219
SetI ASST 6 cut(s) 47, 78, 127, 137, 428, 484
Sse9I AATT 2 cut(s) 333, 548
SsiI CCGC 3 cut(s) 138, 164, 300
SspMI CTAG 1 cut(s) 293
StyD4I CCNGG 1 cut(s) 381
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 2 cut(s) 62, 193
TaiI ACGT 1 cut(s) 47
TaqI TCGA 1 cut(s) 347
TasI AATT 2 cut(s) 333, 548
TatI WGTACW 2 cut(s) 83, 354
TfiI GAWTC 1 cut(s) 440
Tru1I TTAA 3 cut(s) 29, 398, 559
Tru9I TTAA 3 cut(s) 29, 398, 559
TscAI CASTG 2 cut(s) 224, 280
TseFI GTSAC 3 cut(s) 56, 229, 539
TseI GCWGC 2 cut(s) 204, 372
Tsp45I GTSAC 3 cut(s) 56, 229, 539
TspDTI ATGAA 1 cut(s) 528
TspGWI ACGGA 1 cut(s) 248
TspRI CASTG 2 cut(s) 224, 280
XapI RAATTY 1 cut(s) 548
XspI CTAG 1 cut(s) 293
ZrmI AGTACT 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.