pycom17g17300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0029429
Physical Location & Seq
Forward (+)
15088268 .. 15089898
1631 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1161 bp
ATGCATTTTAGACTGGTTGTTCCCAACTGTTGGTCAAATAGTAAAGGTAGTTATAATGCTACTGGGAATTTCAGGACCTCAGTAACAGTCTTGTTTTGTCGAACTTTAGCATCGGCTGGCATTATTAAACTGAATTTCAGATTTGGGTTAATTTTAACACTTGGTTTTATTAAAGAACACATATGTATATATATTCCCTGTTTGTTTGCTGAGCTAAATGTAGAAAATATTAAATGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATTTTACTATTCTTCTTCCAAGGGCCAAGTGTTTGTTATATGGCGTCATCAGCTTCTTCAATGGCGCTACCTGTTAGCGCCAGGCGTGGTCACCGCCACCCCCGCACGCCCGACACAACATCGGCATCCACTACTAATGTCTTAGGGTCACACAAGTGCCTCGGTGATTTCTCCATATATACTATTGTACATGATATTGGATTGCCTAATGATGCTTGGTGGTTTCTCCATGTAAGTAGAAGGAAAAGGTGTAAAGCTAATAATTCAGCAAAGAAAAATATCCAGGGACCTTGTCACCAGTTGAAGATGGCGAAGGTCACCCGGGTGACCAACATACGTATCACGATCAGATATGATGTCCGGCATCAGGCTACACCAATGGCGAAGCGGCATAGCACATTGGCCCACGTAATTGGTCACGCAATGCCAGACGAGGTGAGGACAAAGGTGCGCGATTGTTTGTCGATAAGTATCCTAACTTTTTATTTCTTTTCCTTTAAATGCAGACAAACAACAATTTCAATGACATTAATGACGATATGTTGGCATACATCAACAGGCTCTTCGCTAAACAGTACAAGCAGTGGAAGAGCGACATGCACCAATATTTTTAGACATTTGATGATCCACAGGTCGCTTTTAAGGAGGGTTGCCCAAAGGAGTTCAAGGACCGGCAAGAAAATTGGGTGTGGTTTATGTAGTCATTTTCAGGAGCCCGGTTCATTGATTCTTTTATATAGTTTTAGTGTAAAGTCATGTGGTCTTTTTATTTGTGAATTTTTTCAATGGTTTTGTTGTGTGATGAAGCGTGTTTCATCTGTAAATAGGAAAAGCCTTCCGGGTTTCTCATGTTTGTTTTCCTCTTACATAAAAATTGTTCTCAAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

387

Amino Acids

44.01

Weight (kDa)

10.16

Isoelectric Point (pI)

42.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029429)

Species Orthologous Gene IDs
pyrus_communis pycom12g11810 pycom17g17300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 54
AccB7I CCANNNNNTGG 1 cut(s) 30
AccII CGCG 1 cut(s) 723
AciI CCGC 3 cut(s) 364, 373, 658
AclWI GGATC 1 cut(s) 889
AcsI RAATTY 3 cut(s) 67, 133, 1046
AcyI GRCGYC 1 cut(s) 314
AfaI GTAC 2 cut(s) 459, 847
AfiI CCNNNNNNNGG 2 cut(s) 30, 637
AgsI TTSAA 5 cut(s) 330, 574, 792, 936, 1055
AjnI CCWGG 2 cut(s) 350, 552
AleI CACNNNNGTG 2 cut(s) 424, 593
AluBI AGCT 3 cut(s) 214, 323, 527
AluI AGCT 3 cut(s) 214, 323, 527
AlwI GGATC 1 cut(s) 889
Ama87I CYCGRG 1 cut(s) 591
AoxI GGCC 2 cut(s) 293, 672
ApoI RAATTY 3 cut(s) 67, 133, 1046
AseI ATTAAT 1 cut(s) 800
Asp700I GAANNNNTTC 1 cut(s) 1050
AspLEI GCGC 3 cut(s) 337, 350, 723
AspS9I GGNCC 5 cut(s) 75, 293, 557, 673, 939
AsuC2I CCSGG 4 cut(s) 592, 593, 987, 1110
AsuHPI GGTGA 6 cut(s) 353, 446, 557, 580, 607, 718
AvaI CYCGRG 1 cut(s) 591
AvaII GGWCC 3 cut(s) 75, 557, 939
BaeI ACNNNNGTAYC 2 cut(s) 592, 625
BanII GRGCYC 1 cut(s) 987
BccI CCATC 1 cut(s) 571
BciT130I CCWGG 2 cut(s) 352, 554
BciVI GTATCC 1 cut(s) 752
BcnI CCSGG 4 cut(s) 592, 593, 987, 1110
BfoI RGCGCY 2 cut(s) 338, 351
BfuI GTATCC 1 cut(s) 752
BisI GCNGC 1 cut(s) 659
BlpI GCTNAGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 660
Bme1390I CCNGG 6 cut(s) 352, 554, 592, 593, 987, 1110
Bme18I GGWCC 3 cut(s) 75, 557, 939
BmeT110I CYCGRG 1 cut(s) 591
BmgT120I GGNCC 5 cut(s) 75, 293, 557, 673, 939
BmiI GGNNCC 2 cut(s) 558, 984
BmrFI CCNGG 6 cut(s) 352, 554, 592, 593, 987, 1110
BmrI ACTGGG 1 cut(s) 72
BmsI GCATC 4 cut(s) 119, 404, 472, 643
BmuI ACTGGG 1 cut(s) 72
Bpu1102I GCTNAGC 1 cut(s) 210
BpuMI CCSGG 4 cut(s) 592, 593, 987, 1110
BsaAI YACGTR 2 cut(s) 608, 679
BsaBI GATNNNNATC 1 cut(s) 740
BsaHI GRCGYC 1 cut(s) 314
BsaJI CCNNGG 4 cut(s) 289, 430, 553, 591
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 637
Bse118I RCCGGY 1 cut(s) 941
Bse1I ACTGG 3 cut(s) 18, 67, 568
Bse3DI GCAATG 1 cut(s) 699
Bse8I GATNNNNATC 1 cut(s) 740
BseBI CCWGG 2 cut(s) 352, 554
BseDI CCNNGG 4 cut(s) 289, 430, 553, 591
BseGI GGATG 1 cut(s) 395
BseJI GATNNNNATC 1 cut(s) 740
BseLI CCNNNNNNNGG 2 cut(s) 30, 637
BseMI GCAATG 1 cut(s) 699
BseMII CTCAG 2 cut(s) 93, 201
BseNI ACTGG 3 cut(s) 18, 67, 568
Bsh1236I CGCG 1 cut(s) 723
BshFI GGCC 2 cut(s) 295, 674
BsiHKCI CYCGRG 1 cut(s) 591
BsiSI CCGG 5 cut(s) 592, 631, 942, 987, 1109
BslFI GGGAC 1 cut(s) 570
BslI CCNNNNNNNGG 2 cut(s) 30, 637
BsmFI GGGAC 1 cut(s) 570
BsnI GGCC 2 cut(s) 295, 674
BsoBI CYCGRG 1 cut(s) 591
Bsp1286I GDGCHC 1 cut(s) 987
Bsp1407I TGTACA 1 cut(s) 457
Bsp143I GATC 2 cut(s) 615, 894
Bsp1720I GCTNAGC 1 cut(s) 210
BspACI CCGC 3 cut(s) 364, 373, 658
BspANI GGCC 2 cut(s) 295, 674
BspCNI CTCAG 2 cut(s) 92, 202
BspFNI CGCG 1 cut(s) 723
BspLI GGNNCC 2 cut(s) 558, 984
BspPI GGATC 1 cut(s) 889
BspQI GCTCTTC 2 cut(s) 838, 853
BsrDI GCAATG 1 cut(s) 699
BsrFI RCCGGY 1 cut(s) 941
BsrGI TGTACA 1 cut(s) 457
BsrI ACTGG 3 cut(s) 18, 67, 568
BssAI RCCGGY 1 cut(s) 941
BssECI CCNNGG 4 cut(s) 289, 430, 553, 591
BssMI GATC 2 cut(s) 615, 894
BssNI GRCGYC 1 cut(s) 314
BssT1I CCWWGG 1 cut(s) 289
Bst2UI CCWGG 2 cut(s) 352, 554
Bst4CI ACNGT 3 cut(s) 29, 88, 845
Bst6I CTCTTC 2 cut(s) 838, 853
BstACI GRCGYC 1 cut(s) 314
BstAUI TGTACA 1 cut(s) 457
BstBAI YACGTR 2 cut(s) 608, 679
BstC8I GCNNGC 2 cut(s) 118, 377
BstDEI CTNAG 3 cut(s) 79, 210, 412
BstEII GGTNACC 3 cut(s) 359, 586, 595
BstF5I GGATG 1 cut(s) 395
BstFNI CGCG 1 cut(s) 723
BstH2I RGCGCY 2 cut(s) 338, 351
BstHHI GCGC 3 cut(s) 337, 350, 723
BstKTI GATC 2 cut(s) 618, 897
BstMBI GATC 2 cut(s) 615, 894
BstMWI GCNNNNNNNGC 2 cut(s) 320, 372
BstNI CCWGG 2 cut(s) 352, 554
BstNSI RCATGY 1 cut(s) 870
BstPI GGTNACC 3 cut(s) 359, 586, 595
BstSCI CCNGG 6 cut(s) 350, 552, 590, 591, 985, 1108
BstSNI TACGTA 1 cut(s) 608
BstUI CGCG 1 cut(s) 723
BstXI CCANNNNNNTGG 1 cut(s) 683
BsuI GTATCC 1 cut(s) 752
BsuRI GGCC 2 cut(s) 295, 674
BtsCI GGATG 1 cut(s) 395
BtsI GCAGTG 1 cut(s) 859
BtsIMutI CAGTG 1 cut(s) 859
Cac8I GCNNGC 2 cut(s) 118, 377
CfoI GCGC 3 cut(s) 337, 350, 723
Cfr10I RCCGGY 1 cut(s) 941
Cfr13I GGNCC 5 cut(s) 75, 293, 557, 673, 939
Cfr9I CCCGGG 1 cut(s) 591
CseI GACGC 1 cut(s) 303
Csp6I GTAC 2 cut(s) 458, 846
CviAII CATG 5 cut(s) 461, 500, 867, 1026, 1119
CviQI GTAC 2 cut(s) 458, 846
DdeI CTNAG 3 cut(s) 79, 210, 412
DpnI GATC 2 cut(s) 617, 896
DpnII GATC 2 cut(s) 615, 894
DraI TTTAAA 1 cut(s) 769
Eam1104I CTCTTC 2 cut(s) 838, 853
EarI CTCTTC 2 cut(s) 838, 853
Eco105I TACGTA 1 cut(s) 608
Eco130I CCWWGG 1 cut(s) 289
Eco24I GRGCYC 1 cut(s) 987
Eco47I GGWCC 3 cut(s) 75, 557, 939
Eco88I CYCGRG 1 cut(s) 591
Eco91I GGTNACC 3 cut(s) 359, 586, 595
EcoO109I RGGNCCY 2 cut(s) 75, 557
EcoO65I GGTNACC 3 cut(s) 359, 586, 595
EcoRII CCWGG 2 cut(s) 350, 552
EcoT14I CCWWGG 1 cut(s) 289
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 987
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 5 cut(s) 464, 503, 870, 1029, 1122
FaqI GGGAC 1 cut(s) 570
FatI CATG 5 cut(s) 460, 499, 866, 1025, 1118
FauI CCCGC 1 cut(s) 380
FauNDI CATATG 1 cut(s) 182
Fnu4HI GCNGC 1 cut(s) 659
FokI GGATG 1 cut(s) 382
FriOI GRGCYC 1 cut(s) 987
Fsp4HI GCNGC 1 cut(s) 659
GlaI GCGC 3 cut(s) 336, 349, 722
GluI GCNGC 1 cut(s) 659
HaeII RGCGCY 2 cut(s) 338, 351
HaeIII GGCC 2 cut(s) 295, 674
HapII CCGG 5 cut(s) 592, 631, 942, 987, 1109
HgaI GACGC 1 cut(s) 303
HhaI GCGC 3 cut(s) 337, 350, 723
Hin1I GRCGYC 1 cut(s) 314
Hin1II CATG 5 cut(s) 464, 503, 870, 1029, 1122
Hin6I GCGC 3 cut(s) 335, 348, 721
HinP1I GCGC 3 cut(s) 335, 348, 721
HinfI GANTC 1 cut(s) 997
HpaII CCGG 5 cut(s) 592, 631, 942, 987, 1109
HphI GGTGA 6 cut(s) 353, 446, 557, 580, 607, 718
Hpy188I TCNGA 2 cut(s) 140, 620
Hpy188III TCNNGA 3 cut(s) 73, 613, 980
HpyAV CCTTC 3 cut(s) 504, 577, 1115
HpyCH4III ACNGT 3 cut(s) 29, 88, 845
HpyCH4IV ACGT 2 cut(s) 607, 678
HpyCH4V TGCA 3 cut(s) 4, 774, 870
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 372
HpyF3I CTNAG 3 cut(s) 79, 210, 412
HpySE526I ACGT 2 cut(s) 607, 678
Hsp92I GRCGYC 1 cut(s) 314
Hsp92II CATG 5 cut(s) 464, 503, 870, 1029, 1122
HspAI GCGC 3 cut(s) 335, 348, 721
Kzo9I GATC 2 cut(s) 615, 894
LguI GCTCTTC 2 cut(s) 838, 853
LmnI GCTCC 1 cut(s) 982
LweI GCATC 4 cut(s) 119, 404, 472, 643
MaeII ACGT 2 cut(s) 607, 678
MaeIII GTNAC 7 cut(s) 82, 359, 417, 563, 586, 595, 686
MalI GATC 2 cut(s) 617, 896
MboI GATC 2 cut(s) 615, 894
MboII GAAGA 6 cut(s) 274, 277, 318, 586, 825, 870
MhlI GDGCHC 1 cut(s) 987
MluCI AATT 9 cut(s) 67, 133, 150, 532, 681, 786, 951, 1046, 1143
MnlI CCTC 6 cut(s) 88, 440, 697, 702, 909, 1141
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 1050
MseI TTAA 9 cut(s) 126, 149, 155, 171, 231, 267, 768, 800, 911
MslI CAYNNNNRTG 2 cut(s) 424, 593
MspI CCGG 5 cut(s) 592, 631, 942, 987, 1109
MspR9I CCNGG 6 cut(s) 352, 554, 592, 593, 987, 1110
MvaI CCWGG 2 cut(s) 352, 554
MvnI CGCG 1 cut(s) 723
MwoI GCNNNNNNNGC 2 cut(s) 320, 372
NciI CCSGG 4 cut(s) 592, 593, 987, 1110
NdeI CATATG 1 cut(s) 182
NdeII GATC 2 cut(s) 615, 894
NlaIII CATG 5 cut(s) 464, 503, 870, 1029, 1122
NlaIV GGNNCC 2 cut(s) 558, 984
NmuCI GTSAC 6 cut(s) 359, 417, 563, 586, 595, 686
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 870
OliI CACNNNNGTG 2 cut(s) 424, 593
PciSI GCTCTTC 2 cut(s) 838, 853
PdmI GAANNNNTTC 1 cut(s) 1050
PfeI GAWTC 1 cut(s) 997
PflFI GACNNNGTC 1 cut(s) 561
PflMI CCANNNNNTGG 1 cut(s) 30
PkrI GCNGC 1 cut(s) 660
Ppu21I YACGTR 2 cut(s) 608, 679
PpuMI RGGWCCY 2 cut(s) 75, 557
PshBI ATTAAT 1 cut(s) 800
PsiI TTATAA 1 cut(s) 54
Psp5II RGGWCCY 2 cut(s) 75, 557
Psp6I CCWGG 2 cut(s) 350, 552
PspEI GGTNACC 3 cut(s) 359, 586, 595
PspGI CCWGG 2 cut(s) 350, 552
PspN4I GGNNCC 2 cut(s) 558, 984
PspPI GGNCC 5 cut(s) 75, 293, 557, 673, 939
PspPPI RGGWCCY 2 cut(s) 75, 557
PsyI GACNNNGTC 1 cut(s) 561
RsaI GTAC 2 cut(s) 459, 847
RsaNI GTAC 2 cut(s) 458, 846
RseI CAYNNNNRTG 2 cut(s) 424, 593
SapI GCTCTTC 2 cut(s) 838, 853
SaqAI TTAA 9 cut(s) 126, 149, 155, 171, 231, 267, 768, 800, 911
SatI GCNGC 1 cut(s) 659
Sau3AI GATC 2 cut(s) 615, 894
Sau96I GGNCC 5 cut(s) 75, 293, 557, 673, 939
ScrFI CCNGG 6 cut(s) 352, 554, 592, 593, 987, 1110
SduI GDGCHC 1 cut(s) 987
SfaNI GCATC 4 cut(s) 119, 404, 472, 643
SinI GGWCC 3 cut(s) 75, 557, 939
SmaI CCCGGG 1 cut(s) 593
SmiMI CAYNNNNRTG 2 cut(s) 424, 593
SnaBI TACGTA 1 cut(s) 608
Sse9I AATT 9 cut(s) 67, 133, 150, 532, 681, 786, 951, 1046, 1143
SsiI CCGC 3 cut(s) 364, 373, 658
SspI AATATT 2 cut(s) 229, 877
StyD4I CCNGG 6 cut(s) 350, 552, 590, 591, 985, 1108
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 3 cut(s) 29, 88, 845
TaiI ACGT 2 cut(s) 610, 681
TaqI TCGA 2 cut(s) 100, 734
TasI AATT 9 cut(s) 67, 133, 150, 532, 681, 786, 951, 1046, 1143
TatI WGTACW 2 cut(s) 457, 845
TauI GCSGC 1 cut(s) 661
TfiI GAWTC 1 cut(s) 997
Tru1I TTAA 9 cut(s) 126, 149, 155, 171, 231, 267, 768, 800, 911
Tru9I TTAA 9 cut(s) 126, 149, 155, 171, 231, 267, 768, 800, 911
TscAI CASTG 1 cut(s) 859
TseFI GTSAC 6 cut(s) 359, 417, 563, 586, 595, 686
Tsp45I GTSAC 6 cut(s) 359, 417, 563, 586, 595, 686
TspDTI ATGAA 3 cut(s) 981, 1074, 1088
TspMI CCCGGG 1 cut(s) 591
TspRI CASTG 1 cut(s) 859
Tth111I GACNNNGTC 1 cut(s) 561
Van91I CCANNNNNTGG 1 cut(s) 30
VpaK11BI GGWCC 3 cut(s) 75, 557, 939
VspI ATTAAT 1 cut(s) 800
XapI RAATTY 3 cut(s) 67, 133, 1046
XceI RCATGY 1 cut(s) 870
XmaI CCCGGG 1 cut(s) 591
XmnI GAANNNNTTC 1 cut(s) 1050
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.