pycom17g22190

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0024441
Physical Location & Seq
Reverse (-)
20603790 .. 20606510
2721 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g22190.1

Sequence Viewer

Length: 2721 bp
ATGATACATCGTCATTTATCTCACTTGCGTTCGCTCTCCACTCTCTCTTCACCGACTTCACTAACCCATCATCTCTTGCAATGCAACAAAGAAATCCACAGGCTCTCCCAACTCGGCCGAGCAACAGATGCACGCCAAGTGTTTGAACGAATGCCTCACCGAGACTCCGGCTCTTGGAACACTATGATTTCTGGGTACATCCAAAATGGGCATTTGAACAAAGCCCAAGAGCTCTTTGATTCATTCCGAGATAAAAATGTGAGAACTTGGACCATTTTGTTATCCGGGTATGCGAAACATGGTCATGCGGATGAAGCTAGAGCGGTGTTTGAGTCAATGCCTGAGCGTAATGTAGTTTCTTGGAATGCCATGATTACTGCTTATGCGCAAAATGGTTTGTTAAATAGTGCTAGGGAGGTTTTTGATCAAATGCCTGAGAGAAATATAGTGTCATGGAATTCAATGATTACCGGGTACTGTCGTTGCGGTAGGATGAATGTAGCTCGTGAGCTTTTTGATCAAATGGAGGACAGGAACATTGCCTCTTGGATGGTTATGGTTTCTGGTTATGTTGAGATAGGTGCGTTTCGTGAGGCTTGGATGGTCTTTTTGATGATGTTGAGGAGCAGTGTGAGGCCAGACCATGCCATACTAGTTGCTACCTTATCAGCTGTGATGAGGTTAGACAAATTGGAGTTGATTGAGAGTTTAAGGGTACTGGCTTTGAAGACAGGGTGTGAGATCAATGTGGTAGTGGGCACGGCAATATTGAATGCTTATACAGCGAATGGAAGTTTGGAAGATGCGGTGAAGTTTTTCGTGAGAATGCCACAAAGGAATGATTACTCATGTTCAACAATGATTGCTGCATTTTCACAGTGTGGTAGGTTGGATGATGCCATTGCATTGTATGAGATAGACACTGAAAAAGGTGTTGGTACACAGACGGCGATGGTAACTGCCTCTGCTCAGAATGGGAGGATTCACGAAGCAAGGCATATATTTGATAAAATTGGAAATCCTACTGTGGTTGCATGGAATGCCATGGTTGCAGGGTATGCCCAGAACAGAATGCTTGAAGAAGCAAAAGATATATTTTCCAAAATTCCAGTACCAAATGCTGCTTCATGGGCAGCCATGATTTCTGGGTTTGTCCAGAACGGACAAAGCAAAGAAGCTCTGGAGCTCTTTGCTGAGCTACATAGATCAGGCACTGTACTACCAAGTCATTCAAATTTCACAAGTGCTCTCTTCGCATGTGCAAATATCGACGATGTTGAGATGGGGAAACAAATACACTCGCTTGCTATTAAAACAAGGTTCCAATTCAATTCATTCGTAGGAAATGGGTTGATATCCATGTATGCAAAGTGCAAAACCACAGATATATCACAAGCTTCTAGGATAAAGAGAGTGAGAGACAAAGTATCTTGGGTTTCAGAAAGTTGTACGTTGGATGATGCTCGAAAAGCTTTTGATCAAATGCCAAAACAGGATGTCGTGTCATGGTCTGCTATTATATCAGCTTATGAGCAAGCCGGGCAAGGAGATATTGCATTCAAATTGTTCCTTGAAATGTTATCCAGGGGACTGAAACCAAACCAATCAACAATAACCAGCCTCCTCAGTGCTTGTGGATATCTTGGTGCAACCAAGCTTGGGGAACAGATTCATGCCTTGATACACAAACTTGGACTGGATTCATGTTTGTTTGTGTGCAATGCTTTGATAACAACGTACTTCAAGTGTGGATGGCCCGATGGCCTTTGTATCTTTCAAGAGATGCCTGATCGAGATATTGTCACTTGGAATGCTGTTTTGACCGGGTGTGCTCAAAACGGATTAGGCAAAGAAGCTGTTGAAGTTTTCAAACAAATGGAAACTACTGGGATTTCTCCGAATGAAATTACTTTTGTAGCACTTTTATGCGCTTGTAGCCATGCTGGGTTAGTAGACGAAGGATGGGCTTATTTCAATTCCATGAGCCGACATTATGGGATTACGCCCTTGGTTTATCACTATACCTGTATGGTTGATCTCCTGGGTAGGGCAGGATTACTTTCTGAATCTGAAGATCTCATTCAGAGCATGCCGGTAGAACCAGATTTCGTGATTTGGGAAGCACTTCTTGGTGCCTGTAGGATCCATCGAAACACTGAACTTGGCCAGAGAACGGCTGAAAGGCTTTTCCAAATGGGAACACGGAGATCTGGAACCTATGTTTTATTATCAAATATGTATGCATCTAAAGGCATGTGGGAGAAAGTGCGGGAAGTAAGGGAAATGATGAAAGATAGGGGAGTGACCAAAGAACCCGGATTCAGTTGGATTCAGATGAAGAATAAGGTTCACTATTTTCTAATGGGGGATAAGGCACATGACAACATCAAAGAGATAAACCTGACAGTAAATGCGTTGTACAAACGCTTCCGAGCAACAGGTTATGTGCCGGATACTAATTTTGTTCTTCATGATGTGGCGGAGGAGCAAAAAGAGGATGACCTTGTATACCACAGTGAGAAACTTGCTGTTGCATATGGAATCCTGCAGACACCAAATGGTAGTCCAATTCGGATTCTGAAGAACCTCCGAATATGCGGTGACTGCCATTCGTTTATGAAATTCGTCTCCAGTGTCGCCAAGCGCAAAATCATTCTCCGAGATGGAAATAGGTTCCACCATTTTGAAGATGGTTTGTGCTCTTGTGGTGATTATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR

Protein Analysis

907

Amino Acids

101.8

Weight (kDa)

7.33

Isoelectric Point (pI)

39.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 55 - 87 8.1e-06 PPR repeat family
PPR PF01535 58 - 87 2.3e-06 PPR repeat
PPR_2 PF13041 85 - 118 6.1e-06 PPR repeat family
PPR PF01535 89 - 118 4.4e-07 PPR repeat
PPR_2 PF13041 116 - 149 1e-07 PPR repeat family
PPR_1 PF12854 116 - 144 6.7e-06 PPR repeat
PPR PF01535 119 - 149 3.5e-08 PPR repeat
PPR_2 PF13041 147 - 180 3.7e-10 PPR repeat family
PPR_1 PF12854 147 - 176 1.2e-09 PPR repeat
PPR PF01535 150 - 180 2e-09 PPR repeat
PPR_2 PF13041 499 - 545 4e-12 PPR repeat family
PPR PF01535 501 - 531 5.3e-06 PPR repeat
PPR_2 PF13041 598 - 646 7.8e-13 PPR repeat family
PPR_3 PF13812 599 - 645 8.1e-09 Pentatricopeptide repeat domain
PPR PF01535 601 - 630 2.8e-07 PPR repeat
E_motif PF20431 716 - 778 2.4e-17 E motif
DYW_deaminase PF14432 814 - 906 2e-44 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024441)

Species Orthologous Gene IDs
malus_domestica MD17G1217600.v1.1
prunus_persica Prupe.3G093300_v2.0.a1
pyrus_communis pycom17g22190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 387
AccB1I GGYRCC 1 cut(s) 2132
AccBSI CCGCTC 1 cut(s) 323
AccI GTMKAC 2 cut(s) 1953, 2508
AciI CCGC 7 cut(s) 308, 323, 486, 806, 2269, 2480, 2598
AclWI GGATC 2 cut(s) 2137, 2150
AcoI YGGCCR 2 cut(s) 115, 2164
AcsI RAATTY 4 cut(s) 457, 1104, 1234, 2621
AcuI CTGAAG 2 cut(s) 2091, 2600
AdeI CACNNNGTG 1 cut(s) 881
AfaI GTAC 9 cut(s) 197, 476, 717, 940, 1113, 1218, 1450, 1739, 2420
AfiI CCNNNNNNNGG 4 cut(s) 174, 1659, 2047, 2173
AhlI ACTAGT 1 cut(s) 652
AjnI CCWGG 2 cut(s) 1583, 2040
AjuI GAANNNNNNNTTGG 8 cut(s) 779, 811, 918, 950, 1108, 1140, 2112, 2144
Alw21I GWGCWC 5 cut(s) 234, 1188, 1249, 1834, 2702
Alw26I GTCTC 3 cut(s) 156, 1413, 2632
AlwI GGATC 2 cut(s) 2137, 2150
AlwNI CAGNNNCTG 1 cut(s) 1214
AoxI GGCC 5 cut(s) 115, 635, 1754, 1762, 2164
ApeKI GCWGC 3 cut(s) 866, 1121, 1133
ApoI RAATTY 4 cut(s) 457, 1104, 1234, 2621
Asp700I GAANNNNTTC 3 cut(s) 815, 1668, 2124
AspLEI GCGC 3 cut(s) 388, 1931, 2646
AspS9I GGNCC 2 cut(s) 270, 1755
AsuC2I CCSGG 5 cut(s) 286, 472, 1540, 1825, 2316
AsuHPI GGTGA 5 cut(s) 42, 149, 820, 2612, 2720
AvaII GGWCC 1 cut(s) 270
BaeGI GKGCMC 1 cut(s) 761
BaeI ACNNNNGTAYC 2 cut(s) 466, 499
BalI TGGCCA 1 cut(s) 2166
BamHI GGATCC 1 cut(s) 2142
BanI GGYRCC 1 cut(s) 2132
BanII GRGCYC 2 cut(s) 234, 1188
BarI GAAGNNNNNNTAC 2 cut(s) 2411, 2443
BauI CACGAG 1 cut(s) 504
BbsI GAAGAC 1 cut(s) 734
Bbv12I GWGCWC 5 cut(s) 234, 1188, 1249, 1834, 2702
BbvI GCAGC 3 cut(s) 853, 1108, 1145
BceAI ACGGC 3 cut(s) 777, 963, 2190
BciT130I CCWGG 2 cut(s) 1585, 2042
BciVI GTATCC 1 cut(s) 2446
BclI TGATCA 3 cut(s) 424, 517, 1477
BcnI CCSGG 5 cut(s) 286, 472, 1540, 1825, 2316
BcoDI GTCTC 3 cut(s) 156, 1413, 2632
BcuI ACTAGT 1 cut(s) 652
BfaI CTAG 4 cut(s) 318, 411, 653, 1401
BfmI CTRYAG 2 cut(s) 2137, 2546
BfuI GTATCC 1 cut(s) 2446
BglII AGATCT 2 cut(s) 2074, 2207
BisI GCNGC 3 cut(s) 867, 1122, 1134
BlpI GCTNAGC 1 cut(s) 1194
BlsI GCNGC 3 cut(s) 868, 1123, 1135
Bme1390I CCNGG 7 cut(s) 286, 472, 1540, 1585, 1825, 2042, 2316
Bme18I GGWCC 1 cut(s) 270
BmgT120I GGNCC 2 cut(s) 270, 1755
BmiI GGNNCC 5 cut(s) 1322, 2134, 2144, 2215, 2675
BmrFI CCNGG 7 cut(s) 286, 472, 1540, 1585, 1825, 2042, 2316
BmrI ACTGGG 1 cut(s) 1896
BmsI GCATC 6 cut(s) 118, 793, 886, 1450, 1773, 2252
BmuI ACTGGG 1 cut(s) 1896
BpiI GAAGAC 1 cut(s) 734
BpmI CTGGAG 2 cut(s) 1202, 2614
Bpu10I CCTNAGC 1 cut(s) 342
Bpu1102I GCTNAGC 1 cut(s) 1194
BpuMI CCSGG 5 cut(s) 286, 472, 1540, 1825, 2316
BsaJI CCNNGG 4 cut(s) 1044, 1584, 2007, 2041
BsaXI ACNNNNNCTCC 4 cut(s) 89, 119, 149, 179
Bsc4I CCNNNNNNNGG 4 cut(s) 174, 1659, 2047, 2173
Bse118I RCCGGY 1 cut(s) 2092
Bse1I ACTGG 5 cut(s) 723, 1109, 1701, 1891, 2631
Bse3DI GCAATG 4 cut(s) 86, 537, 900, 1726
BseBI CCWGG 2 cut(s) 1585, 2042
BseDI CCNNGG 4 cut(s) 1044, 1584, 2007, 2041
BseLI CCNNNNNNNGG 4 cut(s) 174, 1659, 2047, 2173
BseMI GCAATG 4 cut(s) 86, 537, 900, 1726
BseMII CTCAG 5 cut(s) 333, 426, 983, 1185, 1639
BseNI ACTGG 5 cut(s) 723, 1109, 1701, 1891, 2631
BseRI GAGGAG 3 cut(s) 637, 1613, 2498
BseSI GKGCMC 1 cut(s) 761
BseX3I CGGCCG 1 cut(s) 115
BseXI GCAGC 3 cut(s) 853, 1108, 1145
BseYI CCCAGC 1 cut(s) 1943
Bsh1285I CGRYCG 1 cut(s) 118
BshFI GGCC 5 cut(s) 117, 637, 1756, 1764, 2166
BshNI GGYRCC 1 cut(s) 2132
BsiEI CGRYCG 1 cut(s) 118
BsiHKAI GWGCWC 5 cut(s) 234, 1188, 1249, 1834, 2702
BsiSI CCGG 8 cut(s) 168, 285, 471, 1539, 1824, 2093, 2316, 2450
BslFI GGGAC 1 cut(s) 1602
BslI CCNNNNNNNGG 4 cut(s) 174, 1659, 2047, 2173
BsmAI GTCTC 3 cut(s) 156, 1413, 2632
BsmBI CGTCTC 1 cut(s) 2632
BsmFI GGGAC 1 cut(s) 1602
BsmI GAATGC 8 cut(s) 156, 370, 778, 831, 1045, 1077, 1556, 1816
BsnI GGCC 5 cut(s) 117, 637, 1756, 1764, 2166
Bsp1286I GDGCHC 6 cut(s) 234, 761, 1188, 1249, 1834, 2702
Bsp1407I TGTACA 1 cut(s) 2418
Bsp1720I GCTNAGC 1 cut(s) 1194
Bsp19I CCATGG 1 cut(s) 1044
BspACI CCGC 7 cut(s) 308, 323, 486, 806, 2269, 2480, 2598
BspANI GGCC 5 cut(s) 117, 637, 1756, 1764, 2166
BspCNI CTCAG 5 cut(s) 334, 427, 982, 1186, 1638
BspHI TCATGA 1 cut(s) 2470
BspLI GGNNCC 5 cut(s) 1322, 2134, 2144, 2215, 2675
BspMAI CTGCAG 1 cut(s) 2550
BspPI GGATC 2 cut(s) 2137, 2150
BspT107I GGYRCC 1 cut(s) 2132
BsrBI CCGCTC 1 cut(s) 323
BsrDI GCAATG 4 cut(s) 86, 537, 900, 1726
BsrFI RCCGGY 1 cut(s) 2092
BsrGI TGTACA 1 cut(s) 2418
BsrI ACTGG 5 cut(s) 723, 1109, 1701, 1891, 2631
BssAI RCCGGY 1 cut(s) 2092
BssECI CCNNGG 4 cut(s) 1044, 1584, 2007, 2041
BssNAI GTATAC 1 cut(s) 2509
BssSI CACGAG 1 cut(s) 504
BssT1I CCWWGG 2 cut(s) 1044, 2007
Bst1107I GTATAC 1 cut(s) 2509
Bst2BI CACGAG 1 cut(s) 504
Bst2UI CCWGG 2 cut(s) 1585, 2042
Bst4CI ACNGT 6 cut(s) 479, 879, 1027, 1216, 2407, 2516
Bst6I CTCTTC 2 cut(s) 52, 1256
BstAPI GCANNNNNTGC 3 cut(s) 128, 1040, 1058
BstAUI TGTACA 1 cut(s) 2418
BstC8I GCNNGC 4 cut(s) 133, 1305, 1536, 2090
BstDEI CTNAG 5 cut(s) 342, 435, 969, 1194, 1625
BstDSI CCRYGG 1 cut(s) 1044
BstHHI GCGC 3 cut(s) 388, 1931, 2646
BstMAI GTCTC 3 cut(s) 156, 1413, 2632
BstMCI CGRYCG 1 cut(s) 118
BstNI CCWGG 2 cut(s) 1585, 2042
BstNSI RCATGY 3 cut(s) 1260, 2092, 2257
BstSCI CCNGG 7 cut(s) 284, 470, 1538, 1583, 1823, 2040, 2314
BstSFI CTRYAG 2 cut(s) 2137, 2546
BstSLI GKGCMC 1 cut(s) 761
BstV1I GCAGC 3 cut(s) 853, 1108, 1145
BstV2I GAAGAC 1 cut(s) 734
BstX2I RGATCY 3 cut(s) 2074, 2142, 2207
BstYI RGATCY 3 cut(s) 2074, 2142, 2207
BstZ17I GTATAC 1 cut(s) 2509
BstZI CGGCCG 1 cut(s) 115
BsuI GTATCC 1 cut(s) 2446
BsuRI GGCC 5 cut(s) 117, 637, 1756, 1764, 2166
BtgI CCRYGG 1 cut(s) 1044
BtgZI GCGATG 1 cut(s) 965
BtsI GCAGTG 1 cut(s) 634
BtsIMutI CAGTG 8 cut(s) 634, 884, 921, 1212, 1633, 2154, 2521, 2638
Cac8I GCNNGC 4 cut(s) 133, 1305, 1536, 2090
CaiI CAGNNNCTG 1 cut(s) 1214
CciI TCATGA 1 cut(s) 2470
CfoI GCGC 3 cut(s) 388, 1931, 2646
Cfr10I RCCGGY 1 cut(s) 2092
Cfr13I GGNCC 2 cut(s) 270, 1755
Csp6I GTAC 9 cut(s) 196, 475, 716, 939, 1112, 1217, 1449, 1738, 2419
CviQI GTAC 9 cut(s) 196, 475, 716, 939, 1112, 1217, 1449, 1738, 2419
DdeI CTNAG 5 cut(s) 342, 435, 969, 1194, 1625
DraIII CACNNNGTG 1 cut(s) 881
EaeI YGGCCR 2 cut(s) 115, 2164
EagI CGGCCG 1 cut(s) 115
Eam1104I CTCTTC 2 cut(s) 52, 1256
EarI CTCTTC 2 cut(s) 52, 1256
EciI GGCGGA 1 cut(s) 2495
Ecl136II GAGCTC 2 cut(s) 232, 1186
EclXI CGGCCG 1 cut(s) 115
Eco130I CCWWGG 2 cut(s) 1044, 2007
Eco24I GRGCYC 2 cut(s) 234, 1188
Eco32I GATATC 2 cut(s) 1356, 1640
Eco47I GGWCC 1 cut(s) 270
Eco52I CGGCCG 1 cut(s) 115
Eco53kI GAGCTC 2 cut(s) 232, 1186
Eco57I CTGAAG 2 cut(s) 2091, 2600
EcoICRI GAGCTC 2 cut(s) 232, 1186
EcoRI GAATTC 1 cut(s) 457
EcoRII CCWGG 2 cut(s) 1583, 2040
EcoRV GATATC 2 cut(s) 1356, 1640
EcoT14I CCWWGG 2 cut(s) 1044, 2007
EcoT22I ATGCAT 1 cut(s) 2245
EcoT38I GRGCYC 2 cut(s) 234, 1188
ErhI CCWWGG 2 cut(s) 1044, 2007
Esp3I CGTCTC 1 cut(s) 2632
FalI AAGNNNNNCTT 2 cut(s) 2112, 2144
FaqI GGGAC 1 cut(s) 1602
FauI CCCGC 1 cut(s) 2262
FauNDI CATATG 1 cut(s) 2536
FbaI TGATCA 3 cut(s) 424, 517, 1477
FblI GTMKAC 2 cut(s) 1953, 2508
Fnu4HI GCNGC 3 cut(s) 867, 1122, 1134
FriOI GRGCYC 2 cut(s) 234, 1188
Fsp4HI GCNGC 3 cut(s) 867, 1122, 1134
FspBI CTAG 4 cut(s) 318, 411, 653, 1401
FspI TGCGCA 1 cut(s) 387
GlaI GCGC 3 cut(s) 387, 1930, 2645
GluI GCNGC 3 cut(s) 867, 1122, 1134
GsaI CCCAGC 1 cut(s) 1947
GsuI CTGGAG 2 cut(s) 1202, 2614
HaeIII GGCC 5 cut(s) 117, 637, 1756, 1764, 2166
HapII CCGG 8 cut(s) 168, 285, 471, 1539, 1824, 2093, 2316, 2450
HhaI GCGC 3 cut(s) 388, 1931, 2646
Hin6I GCGC 3 cut(s) 386, 1929, 2644
HinP1I GCGC 3 cut(s) 386, 1929, 2644
HindIII AAGCTT 3 cut(s) 1395, 1470, 1655
HpaII CCGG 8 cut(s) 168, 285, 471, 1539, 1824, 2093, 2316, 2450
HphI GGTGA 5 cut(s) 42, 149, 820, 2612, 2720
Hpy166II GTNNAC 4 cut(s) 941, 1954, 2350, 2509
Hpy8I GTNNAC 4 cut(s) 941, 1954, 2350, 2509
Hpy99I CGWCG 1 cut(s) 1274
HpyAV CCTTC 1 cut(s) 1952
HpyCH4III ACNGT 6 cut(s) 479, 879, 1027, 1216, 2407, 2516
HpyCH4IV ACGT 2 cut(s) 1451, 1736
HpyF3I CTNAG 5 cut(s) 342, 435, 969, 1194, 1625
HpySE526I ACGT 2 cut(s) 1451, 1736
HspAI GCGC 3 cut(s) 386, 1929, 2644
Ksp22I TGATCA 3 cut(s) 424, 517, 1477
LmnI GCTCC 3 cut(s) 624, 1183, 2485
Lsp1109I GCAGC 3 cut(s) 853, 1108, 1145
LweI GCATC 6 cut(s) 118, 793, 886, 1450, 1773, 2252
MaeI CTAG 4 cut(s) 318, 411, 653, 1401
MaeII ACGT 2 cut(s) 1451, 1736
MaeIII GTNAC 4 cut(s) 955, 1801, 2302, 2600
MbiI CCGCTC 1 cut(s) 323
MflI RGATCY 3 cut(s) 2074, 2142, 2207
MhlI GDGCHC 6 cut(s) 234, 761, 1188, 1249, 1834, 2702
MlsI TGGCCA 1 cut(s) 2166
MluNI TGGCCA 1 cut(s) 2166
MlyI GAGTC 2 cut(s) 158, 341
MmeI TCCRAC 3 cut(s) 870, 1434, 2306
Mox20I TGGCCA 1 cut(s) 2166
Mph1103I ATGCAT 1 cut(s) 2245
MroXI GAANNNNTTC 3 cut(s) 815, 1668, 2124
MscI TGGCCA 1 cut(s) 2166
MseI TTAA 3 cut(s) 401, 710, 1311
MslI CAYNNNNRTG 3 cut(s) 303, 309, 1924
Msp20I TGGCCA 1 cut(s) 2166
MspA1I CMGCKG 1 cut(s) 671
MspI CCGG 8 cut(s) 168, 285, 471, 1539, 1824, 2093, 2316, 2450
MspR9I CCNGG 7 cut(s) 286, 472, 1540, 1585, 1825, 2042, 2316
Mva1269I GAATGC 8 cut(s) 156, 370, 778, 831, 1045, 1077, 1556, 1816
MvaI CCWGG 2 cut(s) 1585, 2042
NciI CCSGG 5 cut(s) 286, 472, 1540, 1825, 2316
NcoI CCATGG 1 cut(s) 1044
NdeI CATATG 1 cut(s) 2536
NlaIV GGNNCC 5 cut(s) 1322, 2134, 2144, 2215, 2675
NmeAIII GCCGAG 2 cut(s) 93, 143
NmuCI GTSAC 3 cut(s) 1801, 2302, 2600
NsbI TGCGCA 1 cut(s) 387
NsiI ATGCAT 1 cut(s) 2245
NspI RCATGY 3 cut(s) 1260, 2092, 2257
PaeI GCATGC 1 cut(s) 2092
PagI TCATGA 1 cut(s) 2470
PctI GAATGC 8 cut(s) 156, 370, 778, 831, 1045, 1077, 1556, 1816
PdmI GAANNNNTTC 3 cut(s) 815, 1668, 2124
PfeI GAWTC 9 cut(s) 239, 982, 1669, 1700, 2066, 2319, 2329, 2541, 2575
PkrI GCNGC 3 cut(s) 868, 1123, 1135
PleI GAGTC 2 cut(s) 158, 340
PpsI GAGTC 2 cut(s) 158, 340
Psp124BI GAGCTC 2 cut(s) 234, 1188
Psp6I CCWGG 2 cut(s) 1583, 2040
PspFI CCCAGC 1 cut(s) 1943
PspGI CCWGG 2 cut(s) 1583, 2040
PspN4I GGNNCC 5 cut(s) 1322, 2134, 2144, 2215, 2675
PspPI GGNCC 2 cut(s) 270, 1755
PstI CTGCAG 1 cut(s) 2550
PstNI CAGNNNCTG 1 cut(s) 1214
PsuI RGATCY 3 cut(s) 2074, 2142, 2207
PvuII CAGCTG 1 cut(s) 671
RsaI GTAC 9 cut(s) 197, 476, 717, 940, 1113, 1218, 1450, 1739, 2420
RsaNI GTAC 9 cut(s) 196, 475, 716, 939, 1112, 1217, 1449, 1738, 2419
RseI CAYNNNNRTG 3 cut(s) 303, 309, 1924
SacI GAGCTC 2 cut(s) 234, 1188
SaqAI TTAA 3 cut(s) 401, 710, 1311
SatI GCNGC 3 cut(s) 867, 1122, 1134
Sau96I GGNCC 2 cut(s) 270, 1755
SchI GAGTC 2 cut(s) 158, 341
ScrFI CCNGG 7 cut(s) 286, 472, 1540, 1585, 1825, 2042, 2316
SduI GDGCHC 6 cut(s) 234, 761, 1188, 1249, 1834, 2702
SfaNI GCATC 6 cut(s) 118, 793, 886, 1450, 1773, 2252
SfcI CTRYAG 2 cut(s) 2137, 2546
SinI GGWCC 1 cut(s) 270
SmiMI CAYNNNNRTG 3 cut(s) 303, 309, 1924
SpeI ACTAGT 1 cut(s) 652
SphI GCATGC 1 cut(s) 2092
SsiI CCGC 7 cut(s) 308, 323, 486, 806, 2269, 2480, 2598
SspI AATATT 1 cut(s) 768
SspMI CTAG 4 cut(s) 318, 411, 653, 1401
SstI GAGCTC 2 cut(s) 234, 1188
StyD4I CCNGG 7 cut(s) 284, 470, 1538, 1583, 1823, 2040, 2314
StyI CCWWGG 2 cut(s) 1044, 2007
TaaI ACNGT 6 cut(s) 479, 879, 1027, 1216, 2407, 2516
TaiI ACGT 2 cut(s) 1454, 1739
TaqI TCGA 4 cut(s) 1269, 1465, 1792, 2149
TatI WGTACW 2 cut(s) 1216, 2418
TfiI GAWTC 9 cut(s) 239, 982, 1669, 1700, 2066, 2319, 2329, 2541, 2575
Tru1I TTAA 3 cut(s) 401, 710, 1311
Tru9I TTAA 3 cut(s) 401, 710, 1311
TscAI CASTG 8 cut(s) 634, 884, 928, 1219, 1633, 2161, 2521, 2638
TseFI GTSAC 3 cut(s) 1801, 2302, 2600
TseI GCWGC 3 cut(s) 866, 1121, 1133
Tsp45I GTSAC 3 cut(s) 1801, 2302, 2600
TspGWI ACGGA 3 cut(s) 1176, 1854, 2218
TspRI CASTG 8 cut(s) 634, 884, 928, 1219, 1633, 2161, 2521, 2638
VpaK11BI GGWCC 1 cut(s) 270
XapI RAATTY 4 cut(s) 457, 1104, 1234, 2621
XceI RCATGY 3 cut(s) 1260, 2092, 2257
XcmI CCANNNNNNNNNTGG 1 cut(s) 2687
XmiI GTMKAC 2 cut(s) 1953, 2508
XmnI GAANNNNTTC 3 cut(s) 815, 1668, 2124
XspI CTAG 4 cut(s) 318, 411, 653, 1401
Zsp2I ATGCAT 1 cut(s) 2245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.