pycom17g24050

DUF1771

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0022535
Physical Location & Seq
Reverse (-)
22299063 .. 22300666
1604 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 483 bp
ATGTTAACTTTGAGTATACTTACTGTGAGAAGCTTATCAACCTGGTGTTGTTTTCTTTGTTTTAGGAATTATGCGAAGGTACTCACTGATTCTGAAGCCCATTCTCCTGTTAGCCCCAAAAGTAGATCTCTCTCAAAAGTCATTGGCACCTCTGGCTCAGTGGAAGCACAGCAGGTCAATTTTGCCCAAGGAGATGAATATCATGCATTCGGAGGAACTGCAAAGGAGCACTGGGATTCAATGAGGTCCTACTATCAGAAAGCTGCAATGACATATTCAAGAGGAGCACGGGAACATGCAGGTTACCTCGCTGAGCAGCGGTTCAATTCCTCAGGGTTATCACAGGGTGCGGGTCGCATGGTTATGAAGCAATCGGTAGGGGTTTTAAATTCTCTTTGGCAAGAATTTTTTGGGGAAATAGTGGAATGCTTGGTAATGCATATTAAACTGATCAAACTGGTGGCTGAGTTAATGTATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1771 Smr

Protein Analysis

161

Amino Acids

17.88

Weight (kDa)

8.69

Isoelectric Point (pI)

48.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022535)

Species Orthologous Gene IDs
pyrus_communis pycom03g07570 pycom08g07540 pycom15g19660 pycom17g24050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 163, 290
AccB1I GGYRCC 1 cut(s) 146
AccI GTMKAC 1 cut(s) 16
AciI CCGC 2 cut(s) 319, 350
AcsI RAATTY 2 cut(s) 388, 404
AcuI CTGAAG 1 cut(s) 114
AdeI CACNNNGTG 1 cut(s) 347
AfaI GTAC 1 cut(s) 81
AgsI TTSAA 3 cut(s) 240, 279, 325
AjnI CCWGG 1 cut(s) 41
AluBI AGCT 2 cut(s) 33, 263
AluI AGCT 2 cut(s) 33, 263
Alw21I GWGCWC 2 cut(s) 231, 289
ApeKI GCWGC 2 cut(s) 263, 316
ApoI RAATTY 2 cut(s) 388, 404
AspS9I GGNCC 1 cut(s) 246
AvaII GGWCC 1 cut(s) 246
AxyI CCTNAGG 1 cut(s) 331
BanI GGYRCC 1 cut(s) 146
Bbv12I GWGCWC 2 cut(s) 231, 289
BbvI GCAGC 2 cut(s) 250, 328
BciT130I CCWGG 1 cut(s) 43
BclI TGATCA 1 cut(s) 450
BfuAI ACCTGC 2 cut(s) 163, 290
BglII AGATCT 1 cut(s) 125
BisI GCNGC 2 cut(s) 264, 317
BlpI GCTNAGC 1 cut(s) 312
BlsI GCNGC 2 cut(s) 265, 318
Bme1390I CCNGG 1 cut(s) 43
Bme18I GGWCC 1 cut(s) 246
BmgT120I GGNCC 1 cut(s) 246
BmiI GGNNCC 1 cut(s) 148
BmrFI CCNGG 1 cut(s) 43
BmrI ACTGGG 1 cut(s) 241
BmuI ACTGGG 1 cut(s) 241
Bpu1102I GCTNAGC 1 cut(s) 312
BsaBI GATNNNNATC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 187
Bse1I ACTGG 2 cut(s) 236, 462
Bse21I CCTNAGG 1 cut(s) 331
Bse3DI GCAATG 1 cut(s) 273
Bse8I GATNNNNATC 1 cut(s) 198
BseBI CCWGG 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 187
BseJI GATNNNNATC 1 cut(s) 198
BseMI GCAATG 1 cut(s) 273
BseMII CTCAG 4 cut(s) 171, 303, 345, 456
BseNI ACTGG 2 cut(s) 236, 462
BseRI GAGGAG 1 cut(s) 297
BseXI GCAGC 2 cut(s) 250, 328
BshNI GGYRCC 1 cut(s) 146
BsiHKAI GWGCWC 2 cut(s) 231, 289
BsmI GAATGC 2 cut(s) 206, 431
Bsp1286I GDGCHC 2 cut(s) 231, 289
Bsp143I GATC 2 cut(s) 125, 450
Bsp1720I GCTNAGC 1 cut(s) 312
BspACI CCGC 2 cut(s) 319, 350
BspCNI CTCAG 4 cut(s) 170, 304, 344, 457
BspLI GGNNCC 1 cut(s) 148
BspMI ACCTGC 2 cut(s) 163, 290
BspT107I GGYRCC 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 273
BsrI ACTGG 2 cut(s) 236, 462
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 2 cut(s) 125, 450
BssNAI GTATAC 1 cut(s) 17
BssT1I CCWWGG 1 cut(s) 187
Bst1107I GTATAC 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 43
Bst4CI ACNGT 1 cut(s) 25
BstDEI CTNAG 4 cut(s) 157, 312, 331, 465
BstEII GGTNACC 1 cut(s) 302
BstKTI GATC 2 cut(s) 128, 453
BstMBI GATC 2 cut(s) 125, 450
BstMWI GCNNNNNNNGC 1 cut(s) 153
BstNI CCWGG 1 cut(s) 43
BstNSI RCATGY 1 cut(s) 299
BstPI GGTNACC 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 41
BstV1I GCAGC 2 cut(s) 250, 328
BstX2I RGATCY 1 cut(s) 125
BstYI RGATCY 1 cut(s) 125
BstZ17I GTATAC 1 cut(s) 17
Bsu36I CCTNAGG 1 cut(s) 331
BtsIMutI CAGTG 3 cut(s) 84, 165, 229
BveI ACCTGC 2 cut(s) 163, 290
Cfr13I GGNCC 1 cut(s) 246
CsiI ACCWGGT 1 cut(s) 41
Csp6I GTAC 1 cut(s) 80
CviAII CATG 3 cut(s) 203, 296, 358
CviJI RGCY 6 cut(s) 33, 98, 114, 156, 263, 464
CviKI_1 RGCY 6 cut(s) 33, 98, 114, 156, 263, 464
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 4 cut(s) 157, 312, 331, 465
DpnI GATC 2 cut(s) 127, 452
DpnII GATC 2 cut(s) 125, 450
DraI TTTAAA 1 cut(s) 387
DraIII CACNNNGTG 1 cut(s) 347
Eco130I CCWWGG 1 cut(s) 187
Eco47I GGWCC 1 cut(s) 246
Eco57I CTGAAG 1 cut(s) 114
Eco81I CCTNAGG 1 cut(s) 331
Eco91I GGTNACC 1 cut(s) 302
EcoO109I RGGNCCY 1 cut(s) 246
EcoO65I GGTNACC 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 41
EcoT14I CCWWGG 1 cut(s) 187
EcoT22I ATGCAT 2 cut(s) 208, 441
ErhI CCWWGG 1 cut(s) 187
FaeI CATG 3 cut(s) 206, 299, 361
FaiI YATR 9 cut(s) 17, 72, 204, 274, 297, 359, 365, 441, 477
FatI CATG 3 cut(s) 202, 295, 357
FauI CCCGC 1 cut(s) 343
FbaI TGATCA 1 cut(s) 450
FblI GTMKAC 1 cut(s) 16
Fnu4HI GCNGC 2 cut(s) 264, 317
Fsp4HI GCNGC 2 cut(s) 264, 317
GluI GCNGC 2 cut(s) 264, 317
Hin1II CATG 3 cut(s) 206, 299, 361
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 31
HinfI GANTC 2 cut(s) 89, 236
HpaI GTTAAC 1 cut(s) 6
Hpy166II GTNNAC 2 cut(s) 6, 17
Hpy188I TCNGA 3 cut(s) 94, 212, 258
Hpy188III TCNNGA 1 cut(s) 279
Hpy8I GTNNAC 2 cut(s) 6, 17
HpyAV CCTTC 1 cut(s) 70
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4V TGCA 5 cut(s) 206, 221, 266, 299, 439
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
HpyF3I CTNAG 4 cut(s) 157, 312, 331, 465
Hsp92II CATG 3 cut(s) 206, 299, 361
Ksp22I TGATCA 1 cut(s) 450
KspAI GTTAAC 1 cut(s) 6
Kzo9I GATC 2 cut(s) 125, 450
LmnI GCTCC 2 cut(s) 226, 284
Lsp1109I GCAGC 2 cut(s) 250, 328
MabI ACCWGGT 1 cut(s) 41
MaeIII GTNAC 1 cut(s) 302
MalI GATC 2 cut(s) 127, 452
MboI GATC 2 cut(s) 125, 450
MflI RGATCY 1 cut(s) 125
MhlI GDGCHC 2 cut(s) 231, 289
MluCI AATT 5 cut(s) 67, 178, 325, 388, 404
MnlI CCTC 6 cut(s) 160, 206, 237, 275, 317, 340
Mph1103I ATGCAT 2 cut(s) 208, 441
MseI TTAA 4 cut(s) 5, 386, 444, 470
MslI CAYNNNNRTG 1 cut(s) 362
MspA1I CMGCKG 1 cut(s) 319
MspR9I CCNGG 1 cut(s) 43
Mva1269I GAATGC 2 cut(s) 206, 431
MvaI CCWGG 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 153
NdeII GATC 2 cut(s) 125, 450
NlaIII CATG 3 cut(s) 206, 299, 361
NlaIV GGNNCC 1 cut(s) 148
NsiI ATGCAT 2 cut(s) 208, 441
NspI RCATGY 1 cut(s) 299
PctI GAATGC 2 cut(s) 206, 431
PfeI GAWTC 2 cut(s) 89, 236
PkrI GCNGC 2 cut(s) 265, 318
PpuMI RGGWCCY 1 cut(s) 246
Psp5II RGGWCCY 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 41
PspEI GGTNACC 1 cut(s) 302
PspGI CCWGG 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 148
PspPI GGNCC 1 cut(s) 246
PspPPI RGGWCCY 1 cut(s) 246
PsuI RGATCY 1 cut(s) 125
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
RseI CAYNNNNRTG 1 cut(s) 362
SaqAI TTAA 4 cut(s) 5, 386, 444, 470
SatI GCNGC 2 cut(s) 264, 317
Sau3AI GATC 2 cut(s) 125, 450
Sau96I GGNCC 1 cut(s) 246
ScrFI CCNGG 1 cut(s) 43
SduI GDGCHC 2 cut(s) 231, 289
SetI ASST 9 cut(s) 35, 44, 81, 152, 177, 248, 265, 304, 309
SexAI ACCWGGT 1 cut(s) 41
SinI GGWCC 1 cut(s) 246
SmiMI CAYNNNNRTG 1 cut(s) 362
Sse9I AATT 5 cut(s) 67, 178, 325, 388, 404
SsiI CCGC 2 cut(s) 319, 350
StyD4I CCNGG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 187
TaaI ACNGT 1 cut(s) 25
TasI AATT 5 cut(s) 67, 178, 325, 388, 404
TfiI GAWTC 2 cut(s) 89, 236
Tru1I TTAA 4 cut(s) 5, 386, 444, 470
Tru9I TTAA 4 cut(s) 5, 386, 444, 470
TscAI CASTG 3 cut(s) 91, 165, 236
TseI GCWGC 2 cut(s) 263, 316
TspDTI ATGAA 2 cut(s) 210, 380
TspRI CASTG 3 cut(s) 91, 165, 236
VpaK11BI GGWCC 1 cut(s) 246
XapI RAATTY 2 cut(s) 388, 404
XceI RCATGY 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 16
Zsp2I ATGCAT 2 cut(s) 208, 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.