pycom17g24750

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0020269
Physical Location & Seq
Forward (+)
22950910 .. 22952782
1873 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 738 bp
ATGGCTGCCGTCCTCTCCCTCAGCACCATCTTTCAACTTCATCCCAGCCTCTCTTCTGGGAGGGTTACCATAAAGCCCAGGGCCGCCCTCCATGAAGCTCACAGAATGCGAGTCCCTTACCAGCTCAAACAGGAACAATCCCGTCTTTTCCACCGGCTCCCCTCCGGCCTGAACATGGAGGTAATCGTGCACAAAAGAGTTGAAGAAAAACAATCAGGCGAGGAAAAACAGAGACCAAGTGAAAACGCACCTCTTGTTTTCGTCCATGGAAGCTACCACGCTGCTTGGTGCTGGGCTGAGCACTGGCTCCCTTTCTTTTCGGCTTCTGGGTATGATTGCTATGCAGTTAGCTTGTTGGGTCAGAACTCATTAAGTTTCGTTTCAGCCTTTTCAGACTCTCTGACGTTTTGTTCCACAGTATCTAAGAAGTGTTTTGCATTGTCACAACTAGGAATTCCTCCAGGAACAGTCTCAGACATGAATCTCTTCATAATCAATATAGACAAGCGATTAGATCTTTCCCATTTTTCATACTTTTCTCTTTGTTCATCAGAGCTATCCTCAGTTGGCTTAGGAGGTTCATCTTCCCTTAGTGCTAAGTCGAGATCCCTGATTCCAAGAGCAAATTCTATGTCCAGCCTCCACTTTGCAAAATTGTTCCTAATCAAAGTCTCAACGGAAGAAAAATCCATAGCAGAAACTGGAAAAACAAAATCAATACATATTAAGACCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

246

Amino Acids

27.13

Weight (kDa)

9.34

Isoelectric Point (pI)

47.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020269)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38360 AT5G38360 AT5G38360
malus_domestica MD17G1244700.v1.1
prunus_persica Prupe.3G142000_v2.0.a1
pyrus_communis pycom17g24750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 84
AclWI GGATC 1 cut(s) 600
AcsI RAATTY 2 cut(s) 453, 625
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 2 cut(s) 35, 203
AjnI CCWGG 2 cut(s) 77, 460
AjuI GAANNNNNNNTTGG 2 cut(s) 610, 642
AluBI AGCT 5 cut(s) 98, 124, 273, 351, 556
AluI AGCT 5 cut(s) 98, 124, 273, 351, 556
Alw21I GWGCWC 2 cut(s) 192, 303
Alw26I GTCTC 3 cut(s) 226, 475, 676
Alw44I GTGCAC 1 cut(s) 188
AlwI GGATC 1 cut(s) 600
AlwNI CAGNNNCTG 1 cut(s) 701
AoxI GGCC 2 cut(s) 81, 166
ApaLI GTGCAC 1 cut(s) 188
ApeKI GCWGC 2 cut(s) 5, 281
ApoI RAATTY 2 cut(s) 453, 625
ArsI GACNNNNNNTTYG 2 cut(s) 617, 649
Asp700I GAANNNNTTC 1 cut(s) 485
AspS9I GGNCC 1 cut(s) 81
BaeGI GKGCMC 1 cut(s) 192
Bbv12I GWGCWC 2 cut(s) 192, 303
BbvCI CCTCAGC 1 cut(s) 20
BbvI GCAGC 1 cut(s) 268
BccI CCATC 1 cut(s) 35
BciT130I CCWGG 2 cut(s) 79, 462
BcoDI GTCTC 3 cut(s) 226, 475, 676
BfaI CTAG 1 cut(s) 449
BglII AGATCT 1 cut(s) 514
BisI GCNGC 3 cut(s) 6, 84, 282
BlpI GCTNAGC 1 cut(s) 297
BlsI GCNGC 3 cut(s) 7, 85, 283
Bme1390I CCNGG 2 cut(s) 79, 462
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 2 cut(s) 158, 308
BmrFI CCNGG 2 cut(s) 79, 462
BplI GAGNNNNNCTC 2 cut(s) 545, 577
BpmI CTGGAG 1 cut(s) 444
Bpu10I CCTNAGC 2 cut(s) 20, 571
Bpu1102I GCTNAGC 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 226
BsaJI CCNNGG 3 cut(s) 77, 78, 265
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse118I RCCGGY 1 cut(s) 153
Bse1I ACTGG 2 cut(s) 308, 706
BseBI CCWGG 2 cut(s) 79, 462
BseDI CCNNGG 3 cut(s) 77, 78, 265
BseGI GGATG 1 cut(s) 40
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMII CTCAG 4 cut(s) 34, 288, 486, 576
BseNI ACTGG 2 cut(s) 308, 706
BseSI GKGCMC 1 cut(s) 192
BseXI GCAGC 1 cut(s) 268
BseYI CCCAGC 2 cut(s) 44, 291
BshFI GGCC 2 cut(s) 83, 168
BsiHKAI GWGCWC 2 cut(s) 192, 303
BsiSI CCGG 2 cut(s) 154, 165
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 3 cut(s) 226, 475, 676
BsmFI GGGAC 1 cut(s) 98
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 2 cut(s) 83, 168
Bso31I GGTCTC 1 cut(s) 226
Bsp1286I GDGCHC 2 cut(s) 192, 303
Bsp143I GATC 2 cut(s) 514, 605
Bsp1720I GCTNAGC 1 cut(s) 297
Bsp19I CCATGG 1 cut(s) 265
BspACI CCGC 1 cut(s) 84
BspANI GGCC 2 cut(s) 83, 168
BspCNI CTCAG 4 cut(s) 33, 289, 485, 575
BspLI GGNNCC 2 cut(s) 158, 308
BspPI GGATC 1 cut(s) 600
BspTNI GGTCTC 1 cut(s) 226
BsrFI RCCGGY 1 cut(s) 153
BsrI ACTGG 2 cut(s) 308, 706
BssAI RCCGGY 1 cut(s) 153
BssECI CCNNGG 3 cut(s) 77, 78, 265
BssMI GATC 2 cut(s) 514, 605
BssT1I CCWWGG 1 cut(s) 265
Bst2UI CCWGG 2 cut(s) 79, 462
Bst4CI ACNGT 2 cut(s) 418, 469
Bst6I CTCTTC 2 cut(s) 58, 491
BstDEI CTNAG 8 cut(s) 20, 297, 423, 472, 562, 571, 590, 597
BstDSI CCRYGG 1 cut(s) 265
BstEII GGTNACC 1 cut(s) 64
BstF5I GGATG 1 cut(s) 40
BstKTI GATC 2 cut(s) 517, 608
BstMAI GTCTC 3 cut(s) 226, 475, 676
BstMBI GATC 2 cut(s) 514, 605
BstNI CCWGG 2 cut(s) 79, 462
BstPI GGTNACC 1 cut(s) 64
BstSCI CCNGG 2 cut(s) 77, 460
BstSLI GKGCMC 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 268
BstX2I RGATCY 2 cut(s) 514, 605
BstYI RGATCY 2 cut(s) 514, 605
BsuRI GGCC 2 cut(s) 83, 168
BtgI CCRYGG 1 cut(s) 265
BtsCI GGATG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 301
CaiI CAGNNNCTG 1 cut(s) 701
Cfr10I RCCGGY 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 81
CspCI CAANNNNNGTGG 2 cut(s) 266, 301
CviAII CATG 5 cut(s) 92, 175, 266, 478, 733
DdeI CTNAG 8 cut(s) 20, 297, 423, 472, 562, 571, 590, 597
DpnI GATC 2 cut(s) 516, 607
DpnII GATC 2 cut(s) 514, 605
Eam1104I CTCTTC 2 cut(s) 58, 491
EarI CTCTTC 2 cut(s) 58, 491
Eco130I CCWWGG 1 cut(s) 265
Eco31I GGTCTC 1 cut(s) 226
Eco91I GGTNACC 1 cut(s) 64
EcoO65I GGTNACC 1 cut(s) 64
EcoRI GAATTC 1 cut(s) 453
EcoRII CCWGG 2 cut(s) 77, 460
EcoT14I CCWWGG 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 5 cut(s) 95, 178, 269, 481, 736
FaqI GGGAC 1 cut(s) 98
FatI CATG 5 cut(s) 91, 174, 265, 477, 732
Fnu4HI GCNGC 3 cut(s) 6, 84, 282
FokI GGATG 1 cut(s) 27
Fsp4HI GCNGC 3 cut(s) 6, 84, 282
FspBI CTAG 1 cut(s) 449
GluI GCNGC 3 cut(s) 6, 84, 282
GsaI CCCAGC 2 cut(s) 48, 295
GsuI CTGGAG 1 cut(s) 444
HaeIII GGCC 2 cut(s) 83, 168
HapII CCGG 2 cut(s) 154, 165
Hin1II CATG 5 cut(s) 95, 178, 269, 481, 736
HinfI GANTC 4 cut(s) 111, 395, 481, 613
HpaII CCGG 2 cut(s) 154, 165
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 5 cut(s) 363, 394, 402, 475, 553
Hpy188III TCNNGA 1 cut(s) 603
Hpy8I GTNNAC 1 cut(s) 190
HpyCH4III ACNGT 2 cut(s) 418, 469
HpyCH4IV ACGT 1 cut(s) 404
HpyCH4V TGCA 4 cut(s) 190, 344, 437, 650
HpyF3I CTNAG 8 cut(s) 20, 297, 423, 472, 562, 571, 590, 597
HpySE526I ACGT 1 cut(s) 404
Hsp92II CATG 5 cut(s) 95, 178, 269, 481, 736
Kzo9I GATC 2 cut(s) 514, 605
LmnI GCTCC 2 cut(s) 162, 312
Lsp1109I GCAGC 1 cut(s) 268
MaeI CTAG 1 cut(s) 449
MaeII ACGT 1 cut(s) 404
MaeIII GTNAC 2 cut(s) 64, 441
MalI GATC 2 cut(s) 516, 607
MboI GATC 2 cut(s) 514, 605
MboII GAAGA 5 cut(s) 45, 215, 478, 576, 692
MflI RGATCY 2 cut(s) 514, 605
MhlI GDGCHC 2 cut(s) 192, 303
MluCI AATT 3 cut(s) 453, 625, 653
MlyI GAGTC 2 cut(s) 120, 389
MroXI GAANNNNTTC 1 cut(s) 485
MseI TTAA 2 cut(s) 371, 726
MspI CCGG 2 cut(s) 154, 165
MspR9I CCNGG 2 cut(s) 79, 462
Mva1269I GAATGC 1 cut(s) 111
MvaI CCWGG 2 cut(s) 79, 462
NcoI CCATGG 1 cut(s) 265
NdeII GATC 2 cut(s) 514, 605
NlaIII CATG 5 cut(s) 95, 178, 269, 481, 736
NlaIV GGNNCC 2 cut(s) 158, 308
NmuCI GTSAC 1 cut(s) 441
PasI CCCWGGG 1 cut(s) 78
PctI GAATGC 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 485
PfeI GAWTC 2 cut(s) 481, 613
PfoI TCCNGGA 1 cut(s) 460
PkrI GCNGC 3 cut(s) 7, 85, 283
PleI GAGTC 2 cut(s) 119, 389
PpsI GAGTC 2 cut(s) 119, 389
Psp6I CCWGG 2 cut(s) 77, 460
PspEI GGTNACC 1 cut(s) 64
PspFI CCCAGC 2 cut(s) 44, 291
PspGI CCWGG 2 cut(s) 77, 460
PspN4I GGNNCC 2 cut(s) 158, 308
PspPI GGNCC 1 cut(s) 81
PstNI CAGNNNCTG 1 cut(s) 701
PsuI RGATCY 2 cut(s) 514, 605
SaqAI TTAA 2 cut(s) 371, 726
SatI GCNGC 3 cut(s) 6, 84, 282
Sau3AI GATC 2 cut(s) 514, 605
Sau96I GGNCC 1 cut(s) 81
SchI GAGTC 2 cut(s) 120, 389
ScrFI CCNGG 2 cut(s) 79, 462
SduI GDGCHC 2 cut(s) 192, 303
SetI ASST 9 cut(s) 100, 126, 183, 253, 275, 353, 407, 558, 580
Sse9I AATT 3 cut(s) 453, 625, 653
SsiI CCGC 1 cut(s) 84
SspMI CTAG 1 cut(s) 449
StyD4I CCNGG 2 cut(s) 77, 460
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 2 cut(s) 418, 469
TaiI ACGT 1 cut(s) 407
TaqI TCGA 1 cut(s) 602
TasI AATT 3 cut(s) 453, 625, 653
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 2 cut(s) 481, 613
Tru1I TTAA 2 cut(s) 371, 726
Tru9I TTAA 2 cut(s) 371, 726
TscAI CASTG 1 cut(s) 308
TseFI GTSAC 1 cut(s) 441
TseI GCWGC 2 cut(s) 5, 281
Tsp45I GTSAC 1 cut(s) 441
TspDTI ATGAA 7 cut(s) 29, 108, 478, 494, 519, 537, 570
TspGWI ACGGA 1 cut(s) 692
TspRI CASTG 1 cut(s) 308
VneI GTGCAC 1 cut(s) 188
XapI RAATTY 2 cut(s) 453, 625
XmnI GAANNNNTTC 1 cut(s) 485
XspI CTAG 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.