Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0029494

Physical Location & Seq

Genomic Coordinates Reverse (-)

23285683 .. 23286141

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g25130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGCGCTTGAATTTGCTGATAGTGAAGATGATCGAGAAAAAGTTGAAACTGCTGCACGTGAACTTGATGACAGCTTTACAAGCCCATGGCGGAGTAATTCCTCGTCTCCTGTGCACCGGTTTATTCAAGAGCTTTCTACTGCCGTTGGTATGCCAAAAAATTTGCAGCTACTGGGAAAATGCACCGGTTTATTCCAGAGAAAATGCAGAAATATTGCATTCTTCATGGTCAAGCTCAAGAGCCGGTGCAACTTGGAGGCACATCAAGGATCAGACCATCCATTTTAGCGGTGGGCAAACGGGTAGAGGACCCGCAGGTCGGGAAGGGAAATCATGGTTTGGGACGGGTCCAATTTTTTGTCAGAATAAACGGGGAGGGCCGGGTCCAAATCTTCAGACCCACAGGGCCCTGGACCGGCCCATTTCTATAATGCAATGGATGGCACTGTTGGAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0008150 GO:0009653 GO:0009888 GO:0009933 GO:0009934 GO:0009987 GO:0016020 GO:0022402 GO:0022603 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0048507 GO:0048509 GO:0048532 GO:0048856 GO:0050789 GO:0050793 GO:0051301 GO:0065007 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6 TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

153

Amino Acids

17.05

Weight (kDa)

9.97

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029494)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g25130 pycom17g25210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	315
Acc36I	ACCTGC	1 cut(s)	305
AciI	CCGC	3 cut(s)	90, 288, 312
AclWI	GGATC	1 cut(s)	276
AcsI	RAATTY	2 cut(s)	10, 159
AcuI	CTGAAG	1 cut(s)	377
AcvI	CACGTG	1 cut(s)	58
AfiI	CCNNNNNNNGG	2 cut(s)	318, 414
AgeI	ACCGGT	2 cut(s)	116, 184
AgsI	TTSAA	3 cut(s)	10, 46, 127
AjnI	CCWGG	1 cut(s)	408
AluBI	AGCT	4 cut(s)	74, 132, 168, 234
AluI	AGCT	4 cut(s)	74, 132, 168, 234
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	1 cut(s)	110
Alw44I	GTGCAC	1 cut(s)	112
AlwI	GGATC	1 cut(s)	276
AlwNI	CAGNNNCTG	1 cut(s)	171
AoxI	GGCC	3 cut(s)	377, 405, 416
ApaI	GGGCCC	1 cut(s)	409
ApaLI	GTGCAC	1 cut(s)	112
ApeKI	GCWGC	2 cut(s)	52, 165
ApoI	RAATTY	2 cut(s)	10, 159
AsiGI	ACCGGT	2 cut(s)	116, 184
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	8 cut(s)	308, 347, 377, 383, 405, 406, 412, 417
AsuC2I	CCSGG	1 cut(s)	381
AvaII	GGWCC	4 cut(s)	308, 347, 383, 412
BaeGI	GKGCMC	2 cut(s)	116, 409
BanII	GRGCYC	1 cut(s)	409
BbrPI	CACGTG	1 cut(s)	58
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	2 cut(s)	39, 177
BccI	CCATC	2 cut(s)	284, 433
BceAI	ACGGC	1 cut(s)	127
BciT130I	CCWGG	1 cut(s)	410
BcnI	CCSGG	1 cut(s)	381
BcoDI	GTCTC	1 cut(s)	110
BfuAI	ACCTGC	1 cut(s)	305
BisI	GCNGC	2 cut(s)	53, 166
BlsI	GCNGC	2 cut(s)	54, 167
Bme1390I	CCNGG	2 cut(s)	381, 410
Bme18I	GGWCC	4 cut(s)	308, 347, 383, 412
BmgT120I	GGNCC	8 cut(s)	308, 347, 377, 383, 405, 406, 412, 417
BmiI	GGNNCC	4 cut(s)	310, 348, 384, 407
BmrFI	CCNGG	2 cut(s)	381, 410
BmrI	ACTGGG	1 cut(s)	181
BmuI	ACTGGG	1 cut(s)	181
BpuEI	CTTGAG	1 cut(s)	220
BpuMI	CCSGG	1 cut(s)	381
BsaAI	YACGTR	1 cut(s)	58
BsaJI	CCNNGG	2 cut(s)	85, 408
BsaWI	WCCGGW	2 cut(s)	116, 184
Bsc4I	CCNNNNNNNGG	2 cut(s)	318, 414
Bse118I	RCCGGY	4 cut(s)	116, 184, 242, 414
Bse1I	ACTGG	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	440
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	2 cut(s)	85, 408
BseGI	GGATG	2 cut(s)	276, 444
BseLI	CCNNNNNNNGG	2 cut(s)	318, 414
BseMI	GCAATG	1 cut(s)	440
BseNI	ACTGG	1 cut(s)	176
BseSI	GKGCMC	2 cut(s)	116, 409
BseXI	GCAGC	2 cut(s)	39, 177
BsgI	GTGCAG	1 cut(s)	38
BshFI	GGCC	3 cut(s)	379, 407, 418
BshTI	ACCGGT	2 cut(s)	116, 184
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	5 cut(s)	117, 185, 243, 380, 415
BslFI	GGGAC	1 cut(s)	355
BslI	CCNNNNNNNGG	2 cut(s)	318, 414
BsmAI	GTCTC	1 cut(s)	110
BsmBI	CGTCTC	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	355
BsmI	GAATGC	1 cut(s)	217
BsnI	GGCC	3 cut(s)	379, 407, 418
Bsp120I	GGGCCC	1 cut(s)	405
Bsp1286I	GDGCHC	2 cut(s)	116, 409
Bsp143I	GATC	2 cut(s)	30, 268
Bsp19I	CCATGG	1 cut(s)	85
BspACI	CCGC	3 cut(s)	90, 288, 312
BspANI	GGCC	3 cut(s)	379, 407, 418
BspLI	GGNNCC	4 cut(s)	310, 348, 384, 407
BspMI	ACCTGC	1 cut(s)	305
BspPI	GGATC	1 cut(s)	276
BsrDI	GCAATG	1 cut(s)	440
BsrFI	RCCGGY	4 cut(s)	116, 184, 242, 414
BsrI	ACTGG	1 cut(s)	176
BssAI	RCCGGY	4 cut(s)	116, 184, 242, 414
BssECI	CCNNGG	2 cut(s)	85, 408
BssMI	GATC	2 cut(s)	30, 268
BssT1I	CCWWGG	1 cut(s)	85
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	1 cut(s)	447
BstBAI	YACGTR	1 cut(s)	58
BstDSI	CCRYGG	1 cut(s)	85
BstF5I	GGATG	2 cut(s)	276, 444
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	2 cut(s)	33, 271
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	2 cut(s)	30, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	1 cut(s)	410
BstSCI	CCNGG	2 cut(s)	379, 408
BstSLI	GKGCMC	2 cut(s)	116, 409
BstV1I	GCAGC	2 cut(s)	39, 177
BsuRI	GGCC	3 cut(s)	379, 407, 418
BtgI	CCRYGG	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	276, 444
BtsIMutI	CAGTG	1 cut(s)	443
BveI	ACCTGC	1 cut(s)	305
CaiI	CAGNNNCTG	1 cut(s)	171
CfoI	GCGC	1 cut(s)	6
Cfr10I	RCCGGY	4 cut(s)	116, 184, 242, 414
Cfr13I	GGNCC	8 cut(s)	308, 347, 377, 383, 405, 406, 412, 417
CspAI	ACCGGT	2 cut(s)	116, 184
CviAII	CATG	3 cut(s)	86, 225, 333
CviJI	RGCY	9 cut(s)	74, 83, 132, 168, 234, 242, 379, 407, 418
CviKI_1	RGCY	9 cut(s)	74, 83, 132, 168, 234, 242, 379, 407, 418
DpnI	GATC	2 cut(s)	32, 270
DpnII	GATC	2 cut(s)	30, 268
DrdI	GACNNNNNNGTC	1 cut(s)	315
DseDI	GACNNNNNNGTC	1 cut(s)	315
EciI	GGCGGA	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	409
Eco47I	GGWCC	4 cut(s)	308, 347, 383, 412
Eco57I	CTGAAG	1 cut(s)	377
Eco72I	CACGTG	1 cut(s)	58
EcoO109I	RGGNCCY	3 cut(s)	308, 405, 406
EcoRII	CCWGG	1 cut(s)	408
EcoT14I	CCWWGG	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	85
Esp3I	CGTCTC	1 cut(s)	110
FaeI	CATG	3 cut(s)	89, 228, 336
FaiI	YATR	5 cut(s)	87, 151, 226, 334, 428
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	3 cut(s)	85, 224, 332
FauI	CCCGC	1 cut(s)	319
Fnu4HI	GCNGC	2 cut(s)	53, 166
FokI	GGATG	2 cut(s)	263, 451
FriOI	GRGCYC	1 cut(s)	409
Fsp4HI	GCNGC	2 cut(s)	53, 166
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	2 cut(s)	53, 166
HaeIII	GGCC	3 cut(s)	379, 407, 418
HapII	CCGG	5 cut(s)	117, 185, 243, 380, 415
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	3 cut(s)	89, 228, 336
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HpaII	CCGG	5 cut(s)	117, 185, 243, 380, 415
Hpy166II	GTNNAC	2 cut(s)	61, 114
Hpy188I	TCNGA	3 cut(s)	273, 363, 396
Hpy188III	TCNNGA	5 cut(s)	34, 127, 195, 237, 320
Hpy8I	GTNNAC	2 cut(s)	61, 114
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	447
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	8 cut(s)	55, 114, 165, 182, 206, 217, 248, 433
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	3 cut(s)	89, 228, 336
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	2 cut(s)	30, 268
Lsp1109I	GCAGC	2 cut(s)	39, 177
MaeII	ACGT	1 cut(s)	57
MalI	GATC	2 cut(s)	32, 270
MboI	GATC	2 cut(s)	30, 268
MboII	GAAGA	3 cut(s)	37, 213, 383
MhlI	GDGCHC	2 cut(s)	116, 409
MluCI	AATT	4 cut(s)	10, 96, 159, 351
MmeI	TCCRAC	1 cut(s)	429
MnlI	CCTC	5 cut(s)	111, 249, 299, 368, 445
MspI	CCGG	5 cut(s)	117, 185, 243, 380, 415
MspR9I	CCNGG	2 cut(s)	381, 410
Mva1269I	GAATGC	1 cut(s)	217
MvaI	CCWGG	1 cut(s)	410
MwoI	GCNNNNNNNGC	1 cut(s)	80
NciI	CCSGG	1 cut(s)	381
NcoI	CCATGG	1 cut(s)	85
NdeII	GATC	2 cut(s)	30, 268
NlaIII	CATG	3 cut(s)	89, 228, 336
NlaIV	GGNNCC	4 cut(s)	310, 348, 384, 407
PctI	GAATGC	1 cut(s)	217
PinAI	ACCGGT	2 cut(s)	116, 184
PkrI	GCNGC	2 cut(s)	54, 167
PmaCI	CACGTG	1 cut(s)	58
PmlI	CACGTG	1 cut(s)	58
Ppu21I	YACGTR	1 cut(s)	58
PpuMI	RGGWCCY	1 cut(s)	308
Psp5II	RGGWCCY	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	408
PspCI	CACGTG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	408
PspN4I	GGNNCC	4 cut(s)	310, 348, 384, 407
PspOMI	GGGCCC	1 cut(s)	405
PspPI	GGNCC	8 cut(s)	308, 347, 377, 383, 405, 406, 412, 417
PspPPI	RGGWCCY	1 cut(s)	308
PstNI	CAGNNNCTG	1 cut(s)	171
SatI	GCNGC	2 cut(s)	53, 166
Sau3AI	GATC	2 cut(s)	30, 268
Sau96I	GGNCC	8 cut(s)	308, 347, 377, 383, 405, 406, 412, 417
ScrFI	CCNGG	2 cut(s)	381, 410
SduI	GDGCHC	2 cut(s)	116, 409
SetI	ASST	6 cut(s)	60, 76, 134, 170, 236, 319
SinI	GGWCC	4 cut(s)	308, 347, 383, 412
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	4 cut(s)	10, 96, 159, 351
SsiI	CCGC	3 cut(s)	90, 288, 312
SspI	AATATT	1 cut(s)	213
StyD4I	CCNGG	2 cut(s)	379, 408
StyI	CCWWGG	1 cut(s)	85
TaaI	ACNGT	1 cut(s)	447
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	1 cut(s)	33
TasI	AATT	4 cut(s)	10, 96, 159, 351
TscAI	CASTG	1 cut(s)	450
TseI	GCWGC	2 cut(s)	52, 165
TspDTI	ATGAA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	450
VneI	GTGCAC	1 cut(s)	112
VpaK11BI	GGWCC	4 cut(s)	308, 347, 383, 412
XapI	RAATTY	2 cut(s)	10, 159
XcmI	CCANNNNNNNNNTGG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.