Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0029494

Physical Location & Seq

Genomic Coordinates Reverse (-)

23362289 .. 23363547

Gene Structure 1259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g25210.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCATATTCTCCTTACTGTATTACTATTAACTGAGTCATTGTTCAGCCAAACTCCAGAGTTTGTGAAACTTGACTTTTCAAAATGTAAAGTGACGTCTAATTATATTCACAGACTAAGCACCGATTCTTCTATGATTAATGGCATTGTTGAGCTGAACCTTTCGGAAAATCTTATCACGGAGAAGATGCGCTTGAAGTTGCTGATAGTGAAGATGATCGAGAAAAAGTTGAAACTGCTGCACGTGAACTTGATGACAGCTTTACAAGCCCGTGGCGGAGTAATTCCTCGTCTCCTGTGCACCGGTTTATTCAAGAGCTTTCTACTGCCGTTGGTATGCCAAAAAATTTGCAGCTACTGGGAAAATGCACCAGTTTATTCCAGAGAAAATGCACAAATATTGCATTCTTCATGGTCAAGCTCAAGAGCCGGTGCAGCTTGGAGGCATATCAAGATCGATCAGACCATCCATTTTAGGGGTGGGCAAACGGGTAGAGGACCCGGGGGTCGGGATGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0008150 GO:0009653 GO:0009888 GO:0009933 GO:0009934 GO:0009987 GO:0016020 GO:0022402 GO:0022603 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0048507 GO:0048509 GO:0048532 GO:0048856 GO:0050789 GO:0050793 GO:0051301 GO:0065007 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6 TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

173

Amino Acids

19.38

Weight (kDa)

9.77

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029494)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g25130 pycom17g25210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	504
AatII	GACGTC	1 cut(s)	98
AciI	CCGC	1 cut(s)	276
AcsI	RAATTY	1 cut(s)	345
AcvI	CACGTG	1 cut(s)	244
AcyI	GRCGYC	1 cut(s)	95
AfiI	CCNNNNNNNGG	2 cut(s)	475, 507
AgeI	ACCGGT	1 cut(s)	302
AgsI	TTSAA	4 cut(s)	81, 196, 232, 313
AluBI	AGCT	6 cut(s)	154, 260, 318, 354, 420, 437
AluI	AGCT	6 cut(s)	154, 260, 318, 354, 420, 437
Alw21I	GWGCWC	1 cut(s)	302
Alw26I	GTCTC	1 cut(s)	296
Alw44I	GTGCAC	1 cut(s)	298
AlwNI	CAGNNNCTG	1 cut(s)	357
Ama87I	CYCGRG	1 cut(s)	500
ApaLI	GTGCAC	1 cut(s)	298
ApeKI	GCWGC	3 cut(s)	238, 351, 434
ApoI	RAATTY	1 cut(s)	345
AseI	ATTAAT	1 cut(s)	138
AsiGI	ACCGGT	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	1 cut(s)	497
AsuC2I	CCSGG	2 cut(s)	501, 502
AvaI	CYCGRG	1 cut(s)	500
AvaII	GGWCC	1 cut(s)	497
BaeGI	GKGCMC	1 cut(s)	302
BbrPI	CACGTG	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	302
BbvI	GCAGC	3 cut(s)	225, 363, 446
BccI	CCATC	2 cut(s)	473, 506
BceAI	ACGGC	1 cut(s)	313
BcnI	CCSGG	2 cut(s)	501, 502
BcoDI	GTCTC	1 cut(s)	296
BisI	GCNGC	3 cut(s)	239, 352, 435
BlsI	GCNGC	3 cut(s)	240, 353, 436
Bme1390I	CCNGG	2 cut(s)	501, 502
Bme18I	GGWCC	1 cut(s)	497
BmeT110I	CYCGRG	1 cut(s)	500
BmgT120I	GGNCC	1 cut(s)	497
BmiI	GGNNCC	1 cut(s)	499
BmrFI	CCNGG	2 cut(s)	501, 502
BmrI	ACTGGG	1 cut(s)	367
BmsI	GCATC	1 cut(s)	177
BmuI	ACTGGG	1 cut(s)	367
BpmI	CTGGAG	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	406
BpuMI	CCSGG	2 cut(s)	501, 502
Bsa29I	ATCGAT	1 cut(s)	456
BsaAI	YACGTR	1 cut(s)	244
BsaHI	GRCGYC	1 cut(s)	95
BsaJI	CCNNGG	3 cut(s)	271, 500, 501
BsaWI	WCCGGW	1 cut(s)	302
Bsc4I	CCNNNNNNNGG	2 cut(s)	475, 507
Bse118I	RCCGGY	2 cut(s)	302, 428
Bse1I	ACTGG	2 cut(s)	362, 371
BseCI	ATCGAT	1 cut(s)	456
BseDI	CCNNGG	3 cut(s)	271, 500, 501
BseGI	GGATG	2 cut(s)	465, 517
BseLI	CCNNNNNNNGG	2 cut(s)	475, 507
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	2 cut(s)	362, 371
BseSI	GKGCMC	1 cut(s)	302
BseXI	GCAGC	3 cut(s)	225, 363, 446
BsgI	GTGCAG	2 cut(s)	224, 453
BshTI	ACCGGT	1 cut(s)	302
BshVI	ATCGAT	1 cut(s)	456
BsiHKAI	GWGCWC	1 cut(s)	302
BsiHKCI	CYCGRG	1 cut(s)	500
BsiSI	CCGG	3 cut(s)	303, 429, 501
BslI	CCNNNNNNNGG	2 cut(s)	475, 507
BsmAI	GTCTC	1 cut(s)	296
BsmBI	CGTCTC	1 cut(s)	296
BsmI	GAATGC	1 cut(s)	403
BsoBI	CYCGRG	1 cut(s)	500
Bsp1286I	GDGCHC	1 cut(s)	302
Bsp143I	GATC	3 cut(s)	216, 453, 457
BspACI	CCGC	1 cut(s)	276
BspCNI	CTCAG	1 cut(s)	25
BspDI	ATCGAT	1 cut(s)	456
BspLI	GGNNCC	1 cut(s)	499
BsrFI	RCCGGY	2 cut(s)	302, 428
BsrI	ACTGG	2 cut(s)	362, 371
BssAI	RCCGGY	2 cut(s)	302, 428
BssECI	CCNNGG	3 cut(s)	271, 500, 501
BssMI	GATC	3 cut(s)	216, 453, 457
BssNI	GRCGYC	1 cut(s)	95
Bst4CI	ACNGT	1 cut(s)	19
BstACI	GRCGYC	1 cut(s)	95
BstBAI	YACGTR	1 cut(s)	244
BstDEI	CTNAG	2 cut(s)	33, 116
BstDSI	CCRYGG	1 cut(s)	271
BstF5I	GGATG	2 cut(s)	465, 517
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	3 cut(s)	219, 456, 460
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	3 cut(s)	216, 453, 457
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 434
BstSCI	CCNGG	2 cut(s)	499, 500
BstSLI	GKGCMC	1 cut(s)	302
BstV1I	GCAGC	3 cut(s)	225, 363, 446
Bsu15I	ATCGAT	1 cut(s)	456
BsuTUI	ATCGAT	1 cut(s)	456
BtgI	CCRYGG	1 cut(s)	271
BtsCI	GGATG	2 cut(s)	465, 517
CaiI	CAGNNNCTG	1 cut(s)	357
CfoI	GCGC	1 cut(s)	192
Cfr10I	RCCGGY	2 cut(s)	302, 428
Cfr13I	GGNCC	1 cut(s)	497
Cfr9I	CCCGGG	1 cut(s)	500
ClaI	ATCGAT	1 cut(s)	456
CspAI	ACCGGT	1 cut(s)	302
CviAII	CATG	1 cut(s)	411
CviJI	RGCY	9 cut(s)	48, 154, 260, 269, 318, 354, 420, 428, 437
CviKI_1	RGCY	9 cut(s)	48, 154, 260, 269, 318, 354, 420, 428, 437
DdeI	CTNAG	2 cut(s)	33, 116
DpnI	GATC	3 cut(s)	218, 455, 459
DpnII	GATC	3 cut(s)	216, 453, 457
DrdI	GACNNNNNNGTC	1 cut(s)	504
DseDI	GACNNNNNNGTC	1 cut(s)	504
EciI	GGCGGA	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	497
Eco72I	CACGTG	1 cut(s)	244
Eco88I	CYCGRG	1 cut(s)	500
EcoO109I	RGGNCCY	1 cut(s)	497
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	296
FaeI	CATG	1 cut(s)	414
FaiI	YATR	6 cut(s)	6, 105, 134, 337, 412, 447
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FatI	CATG	1 cut(s)	410
Fnu4HI	GCNGC	3 cut(s)	239, 352, 435
FokI	GGATG	1 cut(s)	452
Fsp4HI	GCNGC	3 cut(s)	239, 352, 435
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	3 cut(s)	239, 352, 435
GsuI	CTGGAG	1 cut(s)	39
HapII	CCGG	3 cut(s)	303, 429, 501
HhaI	GCGC	1 cut(s)	192
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	1 cut(s)	414
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HinfI	GANTC	2 cut(s)	35, 125
HpaII	CCGG	3 cut(s)	303, 429, 501
Hpy166II	GTNNAC	2 cut(s)	247, 300
Hpy188I	TCNGA	2 cut(s)	166, 462
Hpy188III	TCNNGA	7 cut(s)	56, 220, 313, 381, 423, 451, 509
Hpy8I	GTNNAC	2 cut(s)	247, 300
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4IV	ACGT	2 cut(s)	95, 243
HpyCH4V	TGCA	8 cut(s)	4, 241, 300, 351, 368, 392, 403, 434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 434
HpyF3I	CTNAG	2 cut(s)	33, 116
HpySE526I	ACGT	2 cut(s)	95, 243
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	1 cut(s)	414
HspAI	GCGC	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	216, 453, 457
LpnPI	CCDG	8 cut(s)	69, 308, 316, 343, 384, 394, 442, 514
Lsp1109I	GCAGC	3 cut(s)	225, 363, 446
LweI	GCATC	1 cut(s)	177
MaeII	ACGT	2 cut(s)	95, 243
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	3 cut(s)	218, 455, 459
MboI	GATC	3 cut(s)	216, 453, 457
MboII	GAAGA	4 cut(s)	120, 196, 223, 399
MhlI	GDGCHC	1 cut(s)	302
MluCI	AATT	3 cut(s)	100, 282, 345
MlyI	GAGTC	1 cut(s)	44
MnlI	CCTC	3 cut(s)	297, 435, 488
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	29, 138
MspI	CCGG	3 cut(s)	303, 429, 501
MspR9I	CCNGG	2 cut(s)	501, 502
Mva1269I	GAATGC	1 cut(s)	403
MwoI	GCNNNNNNNGC	2 cut(s)	266, 434
NciI	CCSGG	2 cut(s)	501, 502
NdeII	GATC	3 cut(s)	216, 453, 457
NlaIII	CATG	1 cut(s)	414
NlaIV	GGNNCC	1 cut(s)	499
NmuCI	GTSAC	1 cut(s)	91
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	1 cut(s)	403
PfeI	GAWTC	1 cut(s)	125
PinAI	ACCGGT	1 cut(s)	302
PkrI	GCNGC	3 cut(s)	240, 353, 436
PleI	GAGTC	1 cut(s)	43
PmaCI	CACGTG	1 cut(s)	244
PmlI	CACGTG	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	43
Ppu21I	YACGTR	1 cut(s)	244
PpuMI	RGGWCCY	1 cut(s)	497
PshBI	ATTAAT	1 cut(s)	138
Psp5II	RGGWCCY	1 cut(s)	497
PspCI	CACGTG	1 cut(s)	244
PspN4I	GGNNCC	1 cut(s)	499
PspPI	GGNCC	1 cut(s)	497
PspPPI	RGGWCCY	1 cut(s)	497
PstNI	CAGNNNCTG	1 cut(s)	357
SaqAI	TTAA	2 cut(s)	29, 138
SatI	GCNGC	3 cut(s)	239, 352, 435
Sau3AI	GATC	3 cut(s)	216, 453, 457
Sau96I	GGNCC	1 cut(s)	497
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	2 cut(s)	501, 502
SduI	GDGCHC	1 cut(s)	302
SetI	ASST	9 cut(s)	98, 156, 162, 246, 262, 320, 356, 422, 439
SfaNI	GCATC	1 cut(s)	177
SinI	GGWCC	1 cut(s)	497
SmaI	CCCGGG	1 cut(s)	502
SmlI	CTYRAG	1 cut(s)	421
SmoI	CTYRAG	1 cut(s)	421
Sse9I	AATT	3 cut(s)	100, 282, 345
SsiI	CCGC	1 cut(s)	276
SspI	AATATT	1 cut(s)	399
StyD4I	CCNGG	2 cut(s)	499, 500
TaaI	ACNGT	1 cut(s)	19
TaiI	ACGT	2 cut(s)	98, 246
TaqI	TCGA	2 cut(s)	219, 456
TasI	AATT	3 cut(s)	100, 282, 345
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	2 cut(s)	29, 138
Tru9I	TTAA	2 cut(s)	29, 138
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	3 cut(s)	238, 351, 434
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	1 cut(s)	399
TspGWI	ACGGA	1 cut(s)	194
TspMI	CCCGGG	1 cut(s)	500
VneI	GTGCAC	1 cut(s)	298
VpaK11BI	GGWCC	1 cut(s)	497
VspI	ATTAAT	1 cut(s)	138
XapI	RAATTY	1 cut(s)	345
XcmI	CCANNNNNNNNNTGG	1 cut(s)	476
XmaI	CCCGGG	1 cut(s)	500
ZraI	GACGTC	1 cut(s)	96
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.