NADH dehydrogenase (quinone) activity
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | ATMG00520 |
| pyrus_communis | pycom461g00220 |
| rosa_laevigata | RLG00000000014 RLG00000000083 RLG00000000121 RLG00000000368 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 4 cut(s) | 1232, 1699, 1849, 2007 |
| AccBSI | CCGCTC | 4 cut(s) | 6, 262, 363, 2704 |
| AccI | GTMKAC | 4 cut(s) | 1426, 1555, 1763, 2043 |
| AccII | CGCG | 9 cut(s) | 1196, 1198, 1229, 1772, 1973, 1982, 2013, 2104, 2459 |
| AccIII | TCCGGA | 1 cut(s) | 1746 |
| AcoI | YGGCCR | 4 cut(s) | 218, 1593, 1913, 2765 |
| AcsI | RAATTY | 7 cut(s) | 320, 434, 678, 835, 1013, 1349, 1829 |
| AcvI | CACGTG | 1 cut(s) | 1924 |
| AcyI | GRCGYC | 3 cut(s) | 1138, 1700, 1850 |
| AdeI | CACNNNGTG | 1 cut(s) | 596 |
| AfaI | GTAC | 9 cut(s) | 21, 64, 315, 600, 674, 1342, 1360, 2123, 2654 |
| AfeI | AGCGCT | 1 cut(s) | 2237 |
| AgsI | TTSAA | 5 cut(s) | 81, 766, 1571, 1715, 2794 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2704 |
| AhlI | ACTAGT | 2 cut(s) | 227, 1117 |
| AjnI | CCWGG | 5 cut(s) | 616, 1140, 1910, 2731, 2755 |
| Alw21I | GWGCWC | 1 cut(s) | 2869 |
| Alw26I | GTCTC | 3 cut(s) | 1050, 1129, 1947 |
| Alw44I | GTGCAC | 1 cut(s) | 2865 |
| Ama87I | CYCGRG | 3 cut(s) | 364, 955, 2870 |
| Aor13HI | TCCGGA | 1 cut(s) | 1746 |
| Aor51HI | AGCGCT | 1 cut(s) | 2237 |
| ApaI | GGGCCC | 2 cut(s) | 578, 1088 |
| ApaLI | GTGCAC | 1 cut(s) | 2865 |
| ApeKI | GCWGC | 4 cut(s) | 935, 1331, 1824, 2716 |
| ApoI | RAATTY | 7 cut(s) | 320, 434, 678, 835, 1013, 1349, 1829 |
| AspA2I | CCTAGG | 1 cut(s) | 1498 |
| AspLEI | GCGC | 7 cut(s) | 971, 1198, 1702, 1852, 2104, 2238, 2461 |
| AsuHPI | GGTGA | 4 cut(s) | 578, 2065, 2721, 2842 |
| AsuNHI | GCTAGC | 1 cut(s) | 2615 |
| AvaI | CYCGRG | 3 cut(s) | 364, 955, 2870 |
| AvaII | GGWCC | 8 cut(s) | 240, 892, 1632, 1968, 2207, 2706, 2735, 2860 |
| AvrII | CCTAGG | 1 cut(s) | 1498 |
| BaeGI | GKGCMC | 4 cut(s) | 578, 1088, 2555, 2869 |
| BalI | TGGCCA | 1 cut(s) | 1915 |
| BamHI | GGATCC | 1 cut(s) | 660 |
| BanI | GGYRCC | 4 cut(s) | 1232, 1699, 1849, 2007 |
| BanII | GRGCYC | 2 cut(s) | 578, 1088 |
| BbrPI | CACGTG | 1 cut(s) | 1924 |
| BbsI | GAAGAC | 4 cut(s) | 69, 230, 1879, 1912 |
| Bbv12I | GWGCWC | 1 cut(s) | 2869 |
| BbvI | GCAGC | 4 cut(s) | 922, 1318, 1836, 2703 |
| BccI | CCATC | 4 cut(s) | 470, 1470, 1484, 1711 |
| BceAI | ACGGC | 5 cut(s) | 38, 773, 1220, 1608, 2492 |
| BciT130I | CCWGG | 5 cut(s) | 618, 1142, 1912, 2733, 2757 |
| BciVI | GTATCC | 2 cut(s) | 1454, 1520 |
| BcoDI | GTCTC | 3 cut(s) | 1050, 1129, 1947 |
| BcuI | ACTAGT | 2 cut(s) | 227, 1117 |
| BfmI | CTRYAG | 5 cut(s) | 267, 279, 1311, 2002, 2395 |
| BfoI | RGCGCY | 3 cut(s) | 1703, 1853, 2239 |
| BfuI | GTATCC | 2 cut(s) | 1454, 1520 |
| BglII | AGATCT | 1 cut(s) | 2779 |
| BlnI | CCTAGG | 1 cut(s) | 1498 |
| BmcAI | AGTACT | 1 cut(s) | 2123 |
| Bme18I | GGWCC | 8 cut(s) | 240, 892, 1632, 1968, 2207, 2706, 2735, 2860 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2704 |
| BmeT110I | CYCGRG | 3 cut(s) | 364, 955, 2870 |
| BmrI | ACTGGG | 2 cut(s) | 1229, 1816 |
| BmsI | GCATC | 5 cut(s) | 157, 359, 822, 1986, 2728 |
| BmtI | GCTAGC | 1 cut(s) | 2619 |
| BmuI | ACTGGG | 2 cut(s) | 1229, 1816 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1940 |
| BpiI | GAAGAC | 4 cut(s) | 69, 230, 1879, 1912 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1375, 1407 |
| BpmI | CTGGAG | 2 cut(s) | 768, 2739 |
| Bpu10I | CCTNAGC | 2 cut(s) | 884, 1684 |
| BsaAI | YACGTR | 3 cut(s) | 19, 1924, 2652 |
| BsaHI | GRCGYC | 3 cut(s) | 1138, 1700, 1850 |
| BsaI | GGTCTC | 1 cut(s) | 1050 |
| BsaWI | WCCGGW | 1 cut(s) | 1746 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 171, 201, 1944, 1974 |
| Bse118I | RCCGGY | 1 cut(s) | 1153 |
| Bse1I | ACTGG | 2 cut(s) | 1224, 1811 |
| Bse3DI | GCAATG | 1 cut(s) | 2542 |
| BseAI | TCCGGA | 1 cut(s) | 1746 |
| BseBI | CCWGG | 5 cut(s) | 618, 1142, 1912, 2733, 2757 |
| BseGI | GGATG | 6 cut(s) | 480, 813, 1392, 1542, 1644, 2719 |
| BseMI | GCAATG | 1 cut(s) | 2542 |
| BseMII | CTCAG | 2 cut(s) | 898, 1698 |
| BseNI | ACTGG | 2 cut(s) | 1224, 1811 |
| BseSI | GKGCMC | 4 cut(s) | 578, 1088, 2555, 2869 |
| BseX3I | CGGCCG | 2 cut(s) | 218, 1593 |
| BseXI | GCAGC | 4 cut(s) | 922, 1318, 1836, 2703 |
| BseYI | CCCAGC | 2 cut(s) | 1099, 2194 |
| BsgI | GTGCAG | 1 cut(s) | 1317 |
| Bsh1236I | CGCG | 9 cut(s) | 1196, 1198, 1229, 1772, 1973, 1982, 2013, 2104, 2459 |
| Bsh1285I | CGRYCG | 5 cut(s) | 221, 248, 469, 1596, 1733 |
| BshNI | GGYRCC | 4 cut(s) | 1232, 1699, 1849, 2007 |
| BsiEI | CGRYCG | 5 cut(s) | 221, 248, 469, 1596, 1733 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2869 |
| BsiHKCI | CYCGRG | 3 cut(s) | 364, 955, 2870 |
| BsiWI | CGTACG | 2 cut(s) | 19, 2652 |
| BslFI | GGGAC | 7 cut(s) | 173, 226, 572, 905, 1361, 1593, 1645 |
| BsmAI | GTCTC | 3 cut(s) | 1050, 1129, 1947 |
| BsmBI | CGTCTC | 1 cut(s) | 1129 |
| BsmFI | GGGAC | 7 cut(s) | 173, 226, 572, 905, 1361, 1593, 1645 |
| BsmI | GAATGC | 1 cut(s) | 2393 |
| Bso31I | GGTCTC | 1 cut(s) | 1050 |
| BsoBI | CYCGRG | 3 cut(s) | 364, 955, 2870 |
| Bsp120I | GGGCCC | 2 cut(s) | 574, 1084 |
| Bsp1286I | GDGCHC | 4 cut(s) | 578, 1088, 2555, 2869 |
| Bsp13I | TCCGGA | 1 cut(s) | 1746 |
| Bsp68I | TCGCGA | 1 cut(s) | 1982 |
| BspCNI | CTCAG | 2 cut(s) | 897, 1697 |
| BspEI | TCCGGA | 1 cut(s) | 1746 |
| BspFNI | CGCG | 9 cut(s) | 1196, 1198, 1229, 1772, 1973, 1982, 2013, 2104, 2459 |
| BspHI | TCATGA | 2 cut(s) | 291, 2347 |
| BspMAI | CTGCAG | 1 cut(s) | 1315 |
| BspOI | GCTAGC | 1 cut(s) | 2619 |
| BspT107I | GGYRCC | 4 cut(s) | 1232, 1699, 1849, 2007 |
| BspTNI | GGTCTC | 1 cut(s) | 1050 |
| BsrBI | CCGCTC | 4 cut(s) | 6, 262, 363, 2704 |
| BsrDI | GCAATG | 1 cut(s) | 2542 |
| BsrFI | RCCGGY | 1 cut(s) | 1153 |
| BsrI | ACTGG | 2 cut(s) | 1224, 1811 |
| BssAI | RCCGGY | 1 cut(s) | 1153 |
| BssNAI | GTATAC | 1 cut(s) | 1764 |
| BssNI | GRCGYC | 3 cut(s) | 1138, 1700, 1850 |
| BssT1I | CCWWGG | 1 cut(s) | 1498 |
| Bst1107I | GTATAC | 1 cut(s) | 1764 |
| Bst2UI | CCWGG | 5 cut(s) | 618, 1142, 1912, 2733, 2757 |
| Bst4CI | ACNGT | 7 cut(s) | 268, 596, 1345, 1363, 1442, 1636, 2657 |
| Bst6I | CTCTTC | 3 cut(s) | 178, 399, 492 |
| BstACI | GRCGYC | 3 cut(s) | 1138, 1700, 1850 |
| BstBAI | YACGTR | 3 cut(s) | 19, 1924, 2652 |
| BstDEI | CTNAG | 3 cut(s) | 389, 884, 1684 |
| BstDSI | CCRYGG | 3 cut(s) | 1770, 1971, 2709 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2002 |
| BstF5I | GGATG | 6 cut(s) | 480, 813, 1392, 1542, 1644, 2719 |
| BstFNI | CGCG | 9 cut(s) | 1196, 1198, 1229, 1772, 1973, 1982, 2013, 2104, 2459 |
| BstH2I | RGCGCY | 3 cut(s) | 1703, 1853, 2239 |
| BstHHI | GCGC | 7 cut(s) | 971, 1198, 1702, 1852, 2104, 2238, 2461 |
| BstMAI | GTCTC | 3 cut(s) | 1050, 1129, 1947 |
| BstMCI | CGRYCG | 5 cut(s) | 221, 248, 469, 1596, 1733 |
| BstNI | CCWGG | 5 cut(s) | 618, 1142, 1912, 2733, 2757 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1940 |
| BstSFI | CTRYAG | 5 cut(s) | 267, 279, 1311, 2002, 2395 |
| BstSLI | GKGCMC | 4 cut(s) | 578, 1088, 2555, 2869 |
| BstUI | CGCG | 9 cut(s) | 1196, 1198, 1229, 1772, 1973, 1982, 2013, 2104, 2459 |
| BstV1I | GCAGC | 4 cut(s) | 922, 1318, 1836, 2703 |
| BstV2I | GAAGAC | 4 cut(s) | 69, 230, 1879, 1912 |
| BstX2I | RGATCY | 7 cut(s) | 660, 1665, 1814, 2052, 2218, 2779, 2799 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2763 |
| BstYI | RGATCY | 7 cut(s) | 660, 1665, 1814, 2052, 2218, 2779, 2799 |
| BstZ17I | GTATAC | 1 cut(s) | 1764 |
| BstZI | CGGCCG | 2 cut(s) | 218, 1593 |
| BsuI | GTATCC | 2 cut(s) | 1454, 1520 |
| BtgI | CCRYGG | 3 cut(s) | 1770, 1971, 2709 |
| BtgZI | GCGATG | 3 cut(s) | 336, 1963, 2730 |
| BtsCI | GGATG | 6 cut(s) | 480, 813, 1392, 1542, 1644, 2719 |
| BtsIMutI | CAGTG | 3 cut(s) | 264, 601, 1804 |
| BtuMI | TCGCGA | 1 cut(s) | 1982 |
| CciI | TCATGA | 2 cut(s) | 291, 2347 |
| CfoI | GCGC | 7 cut(s) | 971, 1198, 1702, 1852, 2104, 2238, 2461 |
| Cfr10I | RCCGGY | 1 cut(s) | 1153 |
| Cfr42I | CCGCGG | 2 cut(s) | 1773, 1974 |
| CseI | GACGC | 4 cut(s) | 175, 356, 1146, 1412 |
| CsiI | ACCWGGT | 1 cut(s) | 2731 |
| Csp6I | GTAC | 9 cut(s) | 20, 63, 314, 599, 673, 1341, 1359, 2122, 2653 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1905, 1940 |
| CviAII | CATG | 5 cut(s) | 292, 1051, 1738, 2348, 2739 |
| CviQI | GTAC | 9 cut(s) | 20, 63, 314, 599, 673, 1341, 1359, 2122, 2653 |
| DdeI | CTNAG | 3 cut(s) | 389, 884, 1684 |
| DinI | GGCGCC | 2 cut(s) | 1701, 1851 |
| DraIII | CACNNNGTG | 1 cut(s) | 596 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2704 |
| EaeI | YGGCCR | 4 cut(s) | 218, 1593, 1913, 2765 |
| EagI | CGGCCG | 2 cut(s) | 218, 1593 |
| Eam1104I | CTCTTC | 3 cut(s) | 178, 399, 492 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2704 |
| EarI | CTCTTC | 3 cut(s) | 178, 399, 492 |
| EciI | GGCGGA | 2 cut(s) | 535, 1462 |
| EclXI | CGGCCG | 2 cut(s) | 218, 1593 |
| Eco130I | CCWWGG | 1 cut(s) | 1498 |
| Eco24I | GRGCYC | 2 cut(s) | 578, 1088 |
| Eco31I | GGTCTC | 1 cut(s) | 1050 |
| Eco47I | GGWCC | 8 cut(s) | 240, 892, 1632, 1968, 2207, 2706, 2735, 2860 |
| Eco47III | AGCGCT | 1 cut(s) | 2237 |
| Eco52I | CGGCCG | 2 cut(s) | 218, 1593 |
| Eco72I | CACGTG | 1 cut(s) | 1924 |
| Eco88I | CYCGRG | 3 cut(s) | 364, 955, 2870 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2002 |
| EcoO109I | RGGNCCY | 3 cut(s) | 574, 575, 1084 |
| EcoRI | GAATTC | 5 cut(s) | 320, 434, 1013, 1349, 1829 |
| EcoRII | CCWGG | 5 cut(s) | 616, 1140, 1910, 2731, 2755 |
| EcoT14I | CCWWGG | 1 cut(s) | 1498 |
| EcoT38I | GRGCYC | 2 cut(s) | 578, 1088 |
| EgeI | GGCGCC | 2 cut(s) | 1701, 1851 |
| EheI | GGCGCC | 2 cut(s) | 1701, 1851 |
| ErhI | CCWWGG | 1 cut(s) | 1498 |
| Esp3I | CGTCTC | 1 cut(s) | 1129 |
| FaeI | CATG | 5 cut(s) | 295, 1054, 1741, 2351, 2742 |
| FaqI | GGGAC | 7 cut(s) | 173, 226, 572, 905, 1361, 1593, 1645 |
| FatI | CATG | 5 cut(s) | 291, 1050, 1737, 2347, 2738 |
| FauI | CCCGC | 7 cut(s) | 1095, 1097, 1222, 1765, 1777, 1780, 1966 |
| FblI | GTMKAC | 4 cut(s) | 1426, 1555, 1763, 2043 |
| FokI | GGATG | 6 cut(s) | 467, 800, 1399, 1549, 1631, 2706 |
| FriOI | GRGCYC | 2 cut(s) | 578, 1088 |
| GlaI | GCGC | 7 cut(s) | 970, 1197, 1701, 1851, 2103, 2237, 2460 |
| GsaI | CCCAGC | 2 cut(s) | 1103, 2198 |
| GsuI | CTGGAG | 2 cut(s) | 768, 2739 |
| HaeII | RGCGCY | 3 cut(s) | 1703, 1853, 2239 |
| HgaI | GACGC | 4 cut(s) | 175, 356, 1146, 1412 |
| HhaI | GCGC | 7 cut(s) | 971, 1198, 1702, 1852, 2104, 2238, 2461 |
| Hin1I | GRCGYC | 3 cut(s) | 1138, 1700, 1850 |
| Hin1II | CATG | 5 cut(s) | 295, 1054, 1741, 2351, 2742 |
| Hin6I | GCGC | 7 cut(s) | 969, 1196, 1700, 1850, 2102, 2236, 2459 |
| HinP1I | GCGC | 7 cut(s) | 969, 1196, 1700, 1850, 2102, 2236, 2459 |
| HincII | GTYRAC | 2 cut(s) | 999, 2044 |
| HindII | GTYRAC | 2 cut(s) | 999, 2044 |
| HindIII | AAGCTT | 2 cut(s) | 760, 2318 |
| HphI | GGTGA | 4 cut(s) | 578, 2065, 2721, 2842 |
| Hpy99I | CGWCG | 5 cut(s) | 853, 928, 1211, 1952, 2702 |
| HpyCH4III | ACNGT | 7 cut(s) | 268, 596, 1345, 1363, 1442, 1636, 2657 |
| HpyCH4IV | ACGT | 8 cut(s) | 12, 18, 1264, 1710, 1923, 1941, 2559, 2651 |
| HpyF3I | CTNAG | 3 cut(s) | 389, 884, 1684 |
| HpySE526I | ACGT | 8 cut(s) | 12, 18, 1264, 1710, 1923, 1941, 2559, 2651 |
| Hsp92I | GRCGYC | 3 cut(s) | 1138, 1700, 1850 |
| Hsp92II | CATG | 5 cut(s) | 295, 1054, 1741, 2351, 2742 |
| HspAI | GCGC | 7 cut(s) | 969, 1196, 1700, 1850, 2102, 2236, 2459 |
| KasI | GGCGCC | 2 cut(s) | 1699, 1849 |
| Kpn2I | TCCGGA | 1 cut(s) | 1746 |
| KroI | GCCGGC | 1 cut(s) | 1153 |
| KroNI | GCCGGC | 1 cut(s) | 1155 |
| KspI | CCGCGG | 2 cut(s) | 1773, 1974 |
| LmnI | GCTCC | 8 cut(s) | 30, 140, 179, 775, 1475, 1692, 2233, 2713 |
| Lsp1109I | GCAGC | 4 cut(s) | 922, 1318, 1836, 2703 |
| LweI | GCATC | 5 cut(s) | 157, 359, 822, 1986, 2728 |
| MabI | ACCWGGT | 1 cut(s) | 2731 |
| MaeII | ACGT | 8 cut(s) | 12, 18, 1264, 1710, 1923, 1941, 2559, 2651 |
| MaeIII | GTNAC | 3 cut(s) | 8, 1190, 2647 |
| MbiI | CCGCTC | 4 cut(s) | 6, 262, 363, 2704 |
| MflI | RGATCY | 7 cut(s) | 660, 1665, 1814, 2052, 2218, 2779, 2799 |
| MhlI | GDGCHC | 4 cut(s) | 578, 1088, 2555, 2869 |
| MlsI | TGGCCA | 1 cut(s) | 1915 |
| MluNI | TGGCCA | 1 cut(s) | 1915 |
| Mly113I | GGCGCC | 2 cut(s) | 1700, 1850 |
| MlyI | GAGTC | 5 cut(s) | 471, 549, 1384, 1561, 2126 |
| MmeI | TCCRAC | 5 cut(s) | 688, 841, 1670, 1757, 2350 |
| Mox20I | TGGCCA | 1 cut(s) | 1915 |
| MroI | TCCGGA | 1 cut(s) | 1746 |
| MroNI | GCCGGC | 1 cut(s) | 1153 |
| MscI | TGGCCA | 1 cut(s) | 1915 |
| MseI | TTAA | 8 cut(s) | 128, 492, 713, 833, 945, 1065, 1163, 1178 |
| Msp20I | TGGCCA | 1 cut(s) | 1915 |
| MspA1I | CMGCKG | 5 cut(s) | 1090, 1525, 1772, 1973, 2058 |
| Mva1269I | GAATGC | 1 cut(s) | 2393 |
| MvaI | CCWGG | 5 cut(s) | 618, 1142, 1912, 2733, 2757 |
| MvnI | CGCG | 9 cut(s) | 1196, 1198, 1229, 1772, 1973, 1982, 2013, 2104, 2459 |
| NaeI | GCCGGC | 1 cut(s) | 1155 |
| NarI | GGCGCC | 2 cut(s) | 1700, 1850 |
| NgoMIV | GCCGGC | 1 cut(s) | 1153 |
| NheI | GCTAGC | 1 cut(s) | 2615 |
| NlaIII | CATG | 5 cut(s) | 295, 1054, 1741, 2351, 2742 |
| NmeAIII | GCCGAG | 2 cut(s) | 362, 2078 |
| NmuCI | GTSAC | 1 cut(s) | 2647 |
| NruI | TCGCGA | 1 cut(s) | 1982 |
| PaeR7I | CTCGAG | 1 cut(s) | 955 |
| PagI | TCATGA | 2 cut(s) | 291, 2347 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 1144, 1233, 1956, 2596 |
| PctI | GAATGC | 1 cut(s) | 2393 |
| PdiI | GCCGGC | 1 cut(s) | 1155 |
| PfeI | GAWTC | 5 cut(s) | 332, 696, 1224, 1655, 2833 |
| Pfl23II | CGTACG | 2 cut(s) | 19, 2652 |
| PflFI | GACNNNGTC | 1 cut(s) | 2211 |
| PfoI | TCCNGGA | 1 cut(s) | 2755 |
| Ple19I | CGATCG | 1 cut(s) | 1733 |
| PleI | GAGTC | 5 cut(s) | 471, 549, 1384, 1560, 2126 |
| PluTI | GGCGCC | 2 cut(s) | 1703, 1853 |
| PmaCI | CACGTG | 1 cut(s) | 1924 |
| PmlI | CACGTG | 1 cut(s) | 1924 |
| PpsI | GAGTC | 5 cut(s) | 471, 549, 1384, 1560, 2126 |
| Ppu21I | YACGTR | 3 cut(s) | 19, 1924, 2652 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1940 |
| Psp6I | CCWGG | 5 cut(s) | 616, 1140, 1910, 2731, 2755 |
| PspCI | CACGTG | 1 cut(s) | 1924 |
| PspFI | CCCAGC | 2 cut(s) | 1099, 2194 |
| PspGI | CCWGG | 5 cut(s) | 616, 1140, 1910, 2731, 2755 |
| PspLI | CGTACG | 2 cut(s) | 19, 2652 |
| PspOMI | GGGCCC | 2 cut(s) | 574, 1084 |
| PspXI | VCTCGAGB | 1 cut(s) | 955 |
| PstI | CTGCAG | 1 cut(s) | 1315 |
| PsuI | RGATCY | 7 cut(s) | 660, 1665, 1814, 2052, 2218, 2779, 2799 |
| PsyI | GACNNNGTC | 1 cut(s) | 2211 |
| PvuI | CGATCG | 1 cut(s) | 1733 |
| PvuII | CAGCTG | 1 cut(s) | 1525 |
| RruI | TCGCGA | 1 cut(s) | 1982 |
| RsaI | GTAC | 9 cut(s) | 21, 64, 315, 600, 674, 1342, 1360, 2123, 2654 |
| RsaNI | GTAC | 9 cut(s) | 20, 63, 314, 599, 673, 1341, 1359, 2122, 2653 |
| SacII | CCGCGG | 2 cut(s) | 1773, 1974 |
| SalI | GTCGAC | 1 cut(s) | 2042 |
| SaqAI | TTAA | 8 cut(s) | 128, 492, 713, 833, 945, 1065, 1163, 1178 |
| ScaI | AGTACT | 1 cut(s) | 2123 |
| SchI | GAGTC | 5 cut(s) | 471, 549, 1384, 1561, 2126 |
| SduI | GDGCHC | 4 cut(s) | 578, 1088, 2555, 2869 |
| SexAI | ACCWGGT | 1 cut(s) | 2731 |
| SfaNI | GCATC | 5 cut(s) | 157, 359, 822, 1986, 2728 |
| SfcI | CTRYAG | 5 cut(s) | 267, 279, 1311, 2002, 2395 |
| SfoI | GGCGCC | 2 cut(s) | 1701, 1851 |
| Sfr274I | CTCGAG | 1 cut(s) | 955 |
| Sfr303I | CCGCGG | 2 cut(s) | 1773, 1974 |
| SgrBI | CCGCGG | 2 cut(s) | 1773, 1974 |
| SinI | GGWCC | 8 cut(s) | 240, 892, 1632, 1968, 2207, 2706, 2735, 2860 |
| SlaI | CTCGAG | 1 cut(s) | 955 |
| SmlI | CTYRAG | 1 cut(s) | 955 |
| SmoI | CTYRAG | 1 cut(s) | 955 |
| SpeI | ACTAGT | 2 cut(s) | 227, 1117 |
| SspDI | GGCGCC | 2 cut(s) | 1699, 1849 |
| SspI | AATATT | 1 cut(s) | 2070 |
| StyI | CCWWGG | 1 cut(s) | 1498 |
| TaaI | ACNGT | 7 cut(s) | 268, 596, 1345, 1363, 1442, 1636, 2657 |
| TaiI | ACGT | 8 cut(s) | 15, 21, 1267, 1713, 1926, 1944, 2562, 2654 |
| TaqII | GACCGA | 1 cut(s) | 483 |
| TatI | WGTACW | 2 cut(s) | 598, 2121 |
| TauI | GCSGC | 7 cut(s) | 378, 830, 974, 992, 1787, 2013, 2770 |
| TfiI | GAWTC | 5 cut(s) | 332, 696, 1224, 1655, 2833 |
| Tru1I | TTAA | 8 cut(s) | 128, 492, 713, 833, 945, 1065, 1163, 1178 |
| Tru9I | TTAA | 8 cut(s) | 128, 492, 713, 833, 945, 1065, 1163, 1178 |
| TscAI | CASTG | 3 cut(s) | 271, 601, 1811 |
| TseFI | GTSAC | 1 cut(s) | 2647 |
| TseI | GCWGC | 4 cut(s) | 935, 1331, 1824, 2716 |
| Tsp45I | GTSAC | 1 cut(s) | 2647 |
| TspDTI | ATGAA | 4 cut(s) | 308, 313, 2417, 2421 |
| TspGWI | ACGGA | 9 cut(s) | 17, 409, 574, 1351, 1965, 2487, 2726, 2832, 2852 |
| TspRI | CASTG | 3 cut(s) | 271, 601, 1811 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2211 |
| VneI | GTGCAC | 1 cut(s) | 2865 |
| VpaK11BI | GGWCC | 8 cut(s) | 240, 892, 1632, 1968, 2207, 2706, 2735, 2860 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2002 |
| XapI | RAATTY | 7 cut(s) | 320, 434, 678, 835, 1013, 1349, 1829 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 743 |
| XhoI | CTCGAG | 1 cut(s) | 955 |
| XmaJI | CCTAGG | 1 cut(s) | 1498 |
| XmiI | GTMKAC | 4 cut(s) | 1426, 1555, 1763, 2043 |
| ZrmI | AGTACT | 1 cut(s) | 2123 |