RchiOBHm_Chr7g0189081

Protein of unknown function (DUF707)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
8471671 .. 8474686
3016 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 147 bp
ATGGCTCCGGTTTTTTCAAGATCTGCCTGGCATTGCACTTGGCATCTTATACAGTGGGAGAGAAGAGGGAAGGCAACATATACGCACCAGCATATTGATGCAGTCAGAACAGAGTGGGCAAAATTTGTTGTTAAAACATATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

48

Amino Acids

5.86

Weight (kDa)

9.86

Isoelectric Point (pI)

69.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 1 - 19 2.1e-06 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025122)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0189081
rosa_rugosa Rorug05G0202400
rosa_samantha Rh5CG324400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 122
AgsI TTSAA 1 cut(s) 18
AjnI CCWGG 1 cut(s) 26
ApoI RAATTY 1 cut(s) 122
BciT130I CCWGG 1 cut(s) 28
BglII AGATCT 1 cut(s) 20
Bme1390I CCNGG 1 cut(s) 28
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 28
BmsI GCATC 2 cut(s) 52, 88
BsaWI WCCGGW 1 cut(s) 7
Bse3DI GCAATG 1 cut(s) 31
BseBI CCWGG 1 cut(s) 28
BseMI GCAATG 1 cut(s) 31
BsiSI CCGG 1 cut(s) 8
Bsp143I GATC 1 cut(s) 20
BspLI GGNNCC 1 cut(s) 6
BsrDI GCAATG 1 cut(s) 31
BssMI GATC 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 54
Bst6I CTCTTC 1 cut(s) 58
BstKTI GATC 1 cut(s) 23
BstMBI GATC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 28
BstSCI CCNGG 1 cut(s) 26
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BtsIMutI CAGTG 1 cut(s) 59
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
Eam1104I CTCTTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 26
FaiI YATR 7 cut(s) 50, 79, 81, 93, 139, 141, 143
HapII CCGG 1 cut(s) 8
HpaII CCGG 1 cut(s) 8
Hpy188I TCNGA 1 cut(s) 107
Hpy188III TCNNGA 1 cut(s) 18
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 54
HpyCH4V TGCA 2 cut(s) 36, 101
Kzo9I GATC 1 cut(s) 20
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 4 cut(s) 13, 21, 40, 101
LweI GCATC 2 cut(s) 52, 88
MalI GATC 1 cut(s) 22
MboI GATC 1 cut(s) 20
MboII GAAGA 1 cut(s) 75
MflI RGATCY 1 cut(s) 20
MluCI AATT 1 cut(s) 122
MnlI CCTC 1 cut(s) 59
MseI TTAA 1 cut(s) 132
MslI CAYNNNNRTG 1 cut(s) 96
MspI CCGG 1 cut(s) 8
MspR9I CCNGG 1 cut(s) 28
MvaI CCWGG 1 cut(s) 28
NdeII GATC 1 cut(s) 20
NlaIV GGNNCC 1 cut(s) 6
Psp6I CCWGG 1 cut(s) 26
PspGI CCWGG 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 20
RseI CAYNNNNRTG 1 cut(s) 96
SaqAI TTAA 1 cut(s) 132
Sau3AI GATC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 28
SfaNI GCATC 2 cut(s) 52, 88
SgeI CNNG 6 cut(s) 20, 30, 39, 40, 51, 100
SmiMI CAYNNNNRTG 1 cut(s) 96
Sse9I AATT 1 cut(s) 122
StyD4I CCNGG 1 cut(s) 26
TaaI ACNGT 1 cut(s) 54
TasI AATT 1 cut(s) 122
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 1 cut(s) 59
TspRI CASTG 1 cut(s) 59
XapI RAATTY 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.