Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0025122

Physical Location & Seq

Genomic Coordinates Reverse (-)

35901051 .. 35908207

Gene Structure 7157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG324400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGCTTCTAATTTCAAGGGTCTCTTATGTCTTTAATCAAACTTCTACTTCTGGGATATTGGTAGAGGATGTTTTGCACTTAACAACTAAAGATAGTCATCACGAATATGTTGAGGCATACATTACCTTTGGGTTCTGTGTTGTGGACAGTCATAATCCTGGTATGGGTTATGATATGCAAATTCCTTTTTCCATGTGTTTTGGACATGATGGAGTTGGGAGAATCAATTTTGGTGACAAGGAGAGTCCTGACCAGGAAGAGACCCCATTTAATTATAACCTTTCACATCATCCACCGCCGAGTTTGGAGCCACTCACTGATCTAAATCCCTCCATCTCTCTTCTCAAAGAAATTGGTCTTCCCCTGAAGACTAATCAGCTCCATCCAATCAAACGGGTTCTGCACATCATAGATCTTCCCGTATCCCAACGCAGCCAGCAGCCTATCAGCGACGAACTCGATGTACTGGCTCATCAGATCACAGTTCATTCCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alba TAXi_C TAXi_N

Protein Analysis

165

Amino Acids

18.54

Weight (kDa)

5.27

Isoelectric Point (pI)

41.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0025122)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0189081
rosa_rugosa	Rorug05G0202400
rosa_samantha	Rh5CG324400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	276
AciI	CCGC	1 cut(s)	296
AcsI	RAATTY	1 cut(s)	180
AcuI	CTGAAG	1 cut(s)	386
AfaI	GTAC	1 cut(s)	465
AfiI	CCNNNNNNNGG	1 cut(s)	164
AgsI	TTSAA	1 cut(s)	15
AjnI	CCWGG	2 cut(s)	157, 252
AluBI	AGCT	1 cut(s)	379
AluI	AGCT	1 cut(s)	379
Alw26I	GTCTC	2 cut(s)	25, 254
ApeKI	GCWGC	2 cut(s)	432, 439
ApoI	RAATTY	1 cut(s)	180
AsuHPI	GGTGA	1 cut(s)	245
BbsI	GAAGAC	2 cut(s)	350, 374
BbvI	GCAGC	2 cut(s)	444, 451
BccI	CCATC	3 cut(s)	203, 341, 390
BciT130I	CCWGG	2 cut(s)	159, 254
BciVI	GTATCC	1 cut(s)	433
BcoDI	GTCTC	2 cut(s)	25, 254
BfuI	GTATCC	1 cut(s)	433
BglII	AGATCT	1 cut(s)	412
BisI	GCNGC	2 cut(s)	433, 440
BlsI	GCNGC	2 cut(s)	434, 441
Bme1390I	CCNGG	2 cut(s)	159, 254
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	2 cut(s)	159, 254
BpiI	GAAGAC	2 cut(s)	350, 374
BsaBI	GATNNNNATC	2 cut(s)	96, 324
BsaI	GGTCTC	2 cut(s)	25, 254
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	471
Bse8I	GATNNNNATC	2 cut(s)	96, 324
BseBI	CCWGG	2 cut(s)	159, 254
BseGI	GGATG	3 cut(s)	73, 289, 382
BseJI	GATNNNNATC	2 cut(s)	96, 324
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseNI	ACTGG	1 cut(s)	471
BseXI	GCAGC	2 cut(s)	444, 451
BsgI	GTGCAG	1 cut(s)	386
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	2 cut(s)	25, 254
Bso31I	GGTCTC	2 cut(s)	25, 254
Bsp143I	GATC	3 cut(s)	319, 412, 477
BspACI	CCGC	1 cut(s)	296
BspLI	GGNNCC	1 cut(s)	309
BspTNI	GGTCTC	2 cut(s)	25, 254
BsrI	ACTGG	1 cut(s)	471
BssMI	GATC	3 cut(s)	319, 412, 477
Bst2UI	CCWGG	2 cut(s)	159, 254
Bst4CI	ACNGT	2 cut(s)	149, 484
Bst6I	CTCTTC	2 cut(s)	252, 345
BstC8I	GCNNGC	1 cut(s)	437
BstF5I	GGATG	3 cut(s)	73, 289, 382
BstKTI	GATC	3 cut(s)	322, 415, 480
BstMAI	GTCTC	2 cut(s)	25, 254
BstMBI	GATC	3 cut(s)	319, 412, 477
BstNI	CCWGG	2 cut(s)	159, 254
BstSCI	CCNGG	2 cut(s)	157, 252
BstV1I	GCAGC	2 cut(s)	444, 451
BstV2I	GAAGAC	2 cut(s)	350, 374
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BsuI	GTATCC	1 cut(s)	433
BtsCI	GGATG	3 cut(s)	73, 289, 382
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	1 cut(s)	437
Csp6I	GTAC	1 cut(s)	464
CviAII	CATG	2 cut(s)	193, 206
CviJI	RGCY	5 cut(s)	310, 379, 435, 442, 470
CviKI_1	RGCY	5 cut(s)	310, 379, 435, 442, 470
CviQI	GTAC	1 cut(s)	464
DpnI	GATC	3 cut(s)	321, 414, 479
DpnII	GATC	3 cut(s)	319, 412, 477
Eam1104I	CTCTTC	2 cut(s)	252, 345
EarI	CTCTTC	2 cut(s)	252, 345
Eco31I	GGTCTC	2 cut(s)	25, 254
Eco57I	CTGAAG	1 cut(s)	386
EcoRII	CCWGG	2 cut(s)	157, 252
FaeI	CATG	2 cut(s)	196, 209
FalI	AAGNNNNNCTT	2 cut(s)	7, 39
FatI	CATG	2 cut(s)	192, 205
Fnu4HI	GCNGC	2 cut(s)	433, 440
FokI	GGATG	3 cut(s)	80, 276, 369
Fsp4HI	GCNGC	2 cut(s)	433, 440
GluI	GCNGC	2 cut(s)	433, 440
Hin1II	CATG	2 cut(s)	196, 209
HinfI	GANTC	2 cut(s)	222, 244
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	1 cut(s)	477
Hpy188III	TCNNGA	2 cut(s)	101, 248
Hpy8I	GTNNAC	1 cut(s)	145
Hpy99I	CGWCG	1 cut(s)	455
HpyCH4III	ACNGT	2 cut(s)	149, 484
HpyCH4V	TGCA	3 cut(s)	76, 178, 403
Hsp92II	CATG	2 cut(s)	196, 209
Kzo9I	GATC	3 cut(s)	319, 412, 477
LmnI	GCTCC	2 cut(s)	307, 384
LpnPI	CCDG	9 cut(s)	36, 144, 171, 239, 261, 266, 377, 449, 452
Lsp1109I	GCAGC	2 cut(s)	444, 451
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	3 cut(s)	321, 414, 479
MboI	GATC	3 cut(s)	319, 412, 477
MboII	GAAGA	5 cut(s)	269, 332, 350, 379, 407
MflI	RGATCY	1 cut(s)	412
MluCI	AATT	5 cut(s)	9, 180, 226, 271, 351
MlyI	GAGTC	1 cut(s)	253
MnlI	CCTC	3 cut(s)	58, 106, 340
MseI	TTAA	3 cut(s)	33, 80, 270
MslI	CAYNNNNRTG	1 cut(s)	105
MspR9I	CCNGG	2 cut(s)	159, 254
MvaI	CCWGG	2 cut(s)	159, 254
NdeII	GATC	3 cut(s)	319, 412, 477
NlaIII	CATG	2 cut(s)	196, 209
NlaIV	GGNNCC	1 cut(s)	309
NmeAIII	GCCGAG	1 cut(s)	324
NmuCI	GTSAC	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	222
PkrI	GCNGC	2 cut(s)	434, 441
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
PsiI	TTATAA	1 cut(s)	276
Psp6I	CCWGG	2 cut(s)	157, 252
PspGI	CCWGG	2 cut(s)	157, 252
PspN4I	GGNNCC	1 cut(s)	309
PsrI	GAACNNNNNNTAC	2 cut(s)	447, 479
PsuI	RGATCY	1 cut(s)	412
RsaI	GTAC	1 cut(s)	465
RsaNI	GTAC	1 cut(s)	464
RseI	CAYNNNNRTG	1 cut(s)	105
SaqAI	TTAA	3 cut(s)	33, 80, 270
SatI	GCNGC	2 cut(s)	433, 440
Sau3AI	GATC	3 cut(s)	319, 412, 477
SchI	GAGTC	1 cut(s)	253
ScrFI	CCNGG	2 cut(s)	159, 254
SetI	ASST	3 cut(s)	128, 282, 381
SmiMI	CAYNNNNRTG	1 cut(s)	105
Sse9I	AATT	5 cut(s)	9, 180, 226, 271, 351
SsiI	CCGC	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	157, 252
TaaI	ACNGT	2 cut(s)	149, 484
TaqI	TCGA	1 cut(s)	459
TasI	AATT	5 cut(s)	9, 180, 226, 271, 351
TatI	WGTACW	1 cut(s)	463
TfiI	GAWTC	1 cut(s)	222
Tru1I	TTAA	3 cut(s)	33, 80, 270
Tru9I	TTAA	3 cut(s)	33, 80, 270
TscAI	CASTG	1 cut(s)	322
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	2 cut(s)	432, 439
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	1 cut(s)	476
TspRI	CASTG	1 cut(s)	322
XapI	RAATTY	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.