RchiOBHm_Chr7g0195231

Anthocyanidin reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0025153
Physical Location & Seq
Reverse (-)
13130857 .. 13131753
897 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 645 bp
ATGCTCATTTTGGGTCCAAACAAGTTCTACAATGCAAGCATACTTTCTATGTCCCCAAGAAGAGAAGATGGAGTTGGATTTAAAGCCTGCCTTGACGAATCATGTTTGACACCACTTGATGCCTCGTATACTTATGGCAATGCTTTCACAGTGGGATATCTTAAATCGAAGATCTTCGCTGAGAAAGCAGTGCTGAGCTATAACGGCTTTGATCATGGGATTTTAGAAGTGGTAACTCTTCCTTGTGGCTTAGTGGGAGGAGAAACTCTTCTTTCATATTTGCCTATAAGCGTGGGAGCGATTCTGTTGCAACTTACTGGGGACTTATTTTCTGGCAATTCATTAAACCTTCTGCAAGAATGTATCGGATTGGTTCCTATAGCGCACGTTAATGATATTTGCCAAGCCCATATTTTCTGCATGGAACAACTATCAATGAGAGGTAGATTCTGTTGTGCAGTTTCCGGTCTCTCTATCAAAGAAATGGCAATATTGACTCAAGGGCCACAAGTAGGAAGCAAAGGTGACTTCAGTAAGCTGATGAAGATGGGTTTTGAGTACGAGTATGGCATAAAGGATATACTAGATGACAGTGTGGCATGGGCAAAGAAGTTAAATGGGAGCTCTCTTTCTCAAGTAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

214

Amino Acids

23.11

Weight (kDa)

5.35

Isoelectric Point (pI)

34.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025153)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0195231
rosa_multiflora Rmu_sc0002381.1_g000009
rosa_samantha Rh7DG150200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 128
AcuI CTGAAG 1 cut(s) 514
AfaI GTAC 1 cut(s) 560
AfiI CCNNNNNNNGG 1 cut(s) 512
AjuI GAANNNNNNNTTGG 2 cut(s) 57, 89
AluBI AGCT 3 cut(s) 198, 538, 624
AluI AGCT 3 cut(s) 198, 538, 624
Alw21I GWGCWC 1 cut(s) 626
Alw26I GTCTC 1 cut(s) 473
AoxI GGCC 1 cut(s) 503
Asp700I GAANNNNTTC 2 cut(s) 173, 267
AspLEI GCGC 1 cut(s) 385
AspS9I GGNCC 2 cut(s) 14, 503
AsuHPI GGTGA 1 cut(s) 536
AvaII GGWCC 1 cut(s) 14
BanII GRGCYC 1 cut(s) 626
Bbv12I GWGCWC 1 cut(s) 626
BccI CCATC 2 cut(s) 62, 541
BceAI ACGGC 1 cut(s) 220
BcgI CGANNNNNNTGC 2 cut(s) 289, 323
BclI TGATCA 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 473
BfaI CTAG 1 cut(s) 584
BfmI CTRYAG 1 cut(s) 378
BglII AGATCT 1 cut(s) 171
BlpI GCTNAGC 1 cut(s) 194
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 2 cut(s) 14, 503
BmiI GGNNCC 2 cut(s) 15, 375
BmrI ACTGGG 1 cut(s) 327
BmsI GCATC 1 cut(s) 109
BmuI ACTGGG 1 cut(s) 327
Bpu1102I GCTNAGC 1 cut(s) 194
BpuEI CTTGAG 2 cut(s) 483, 618
BsaI GGTCTC 1 cut(s) 473
BsaWI WCCGGW 1 cut(s) 464
Bsc4I CCNNNNNNNGG 1 cut(s) 512
Bse1I ACTGG 1 cut(s) 322
Bse3DI GCAATG 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 512
BseMI GCAATG 1 cut(s) 145
BseMII CTCAG 2 cut(s) 171, 185
BseNI ACTGG 1 cut(s) 322
BseRI GAGGAG 1 cut(s) 273
BsgI GTGCAG 1 cut(s) 477
BshFI GGCC 1 cut(s) 505
BsiHKAI GWGCWC 1 cut(s) 626
BsiSI CCGG 1 cut(s) 465
BslFI GGGAC 2 cut(s) 37, 335
BslI CCNNNNNNNGG 1 cut(s) 512
BsmAI GTCTC 1 cut(s) 473
BsmFI GGGAC 2 cut(s) 37, 335
BsnI GGCC 1 cut(s) 505
Bso31I GGTCTC 1 cut(s) 473
Bsp1286I GDGCHC 1 cut(s) 626
Bsp143I GATC 2 cut(s) 171, 211
Bsp1720I GCTNAGC 1 cut(s) 194
BspANI GGCC 1 cut(s) 505
BspCNI CTCAG 2 cut(s) 172, 186
BspLI GGNNCC 2 cut(s) 15, 375
BspTNI GGTCTC 1 cut(s) 473
BsrDI GCAATG 1 cut(s) 145
BsrI ACTGG 1 cut(s) 322
BssMI GATC 2 cut(s) 171, 211
BssNAI GTATAC 1 cut(s) 129
Bst1107I GTATAC 1 cut(s) 129
Bst4CI ACNGT 2 cut(s) 151, 593
Bst6I CTCTTC 3 cut(s) 55, 243, 273
BstC8I GCNNGC 2 cut(s) 37, 88
BstDEI CTNAG 3 cut(s) 180, 194, 250
BstHHI GCGC 1 cut(s) 385
BstKTI GATC 2 cut(s) 174, 214
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 2 cut(s) 171, 211
BstMWI GCNNNNNNNGC 2 cut(s) 185, 204
BstSFI CTRYAG 1 cut(s) 378
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
BstZ17I GTATAC 1 cut(s) 129
BsuRI GGCC 1 cut(s) 505
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 3 cut(s) 156, 195, 598
Cac8I GCNNGC 2 cut(s) 37, 88
CfoI GCGC 1 cut(s) 385
Cfr13I GGNCC 2 cut(s) 14, 503
Csp6I GTAC 1 cut(s) 559
CviAII CATG 4 cut(s) 102, 215, 421, 600
CviJI RGCY 8 cut(s) 86, 198, 207, 249, 407, 505, 538, 624
CviKI_1 RGCY 8 cut(s) 86, 198, 207, 249, 407, 505, 538, 624
CviQI GTAC 1 cut(s) 559
DdeI CTNAG 3 cut(s) 180, 194, 250
DpnI GATC 2 cut(s) 173, 213
DpnII GATC 2 cut(s) 171, 211
DraI TTTAAA 1 cut(s) 82
Eam1104I CTCTTC 3 cut(s) 55, 243, 273
EarI CTCTTC 3 cut(s) 55, 243, 273
Ecl136II GAGCTC 1 cut(s) 624
Eco24I GRGCYC 1 cut(s) 626
Eco31I GGTCTC 1 cut(s) 473
Eco32I GATATC 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 14
Eco53kI GAGCTC 1 cut(s) 624
Eco57I CTGAAG 1 cut(s) 514
EcoICRI GAGCTC 1 cut(s) 624
EcoRV GATATC 1 cut(s) 158
EcoT38I GRGCYC 1 cut(s) 626
FaeI CATG 4 cut(s) 105, 218, 424, 603
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FaqI GGGAC 2 cut(s) 37, 335
FatI CATG 4 cut(s) 101, 214, 420, 599
FbaI TGATCA 1 cut(s) 211
FblI GTMKAC 1 cut(s) 128
FriOI GRGCYC 1 cut(s) 626
FspBI CTAG 1 cut(s) 584
GlaI GCGC 1 cut(s) 384
HaeIII GGCC 1 cut(s) 505
HapII CCGG 1 cut(s) 465
HhaI GCGC 1 cut(s) 385
Hin1II CATG 4 cut(s) 105, 218, 424, 603
Hin6I GCGC 1 cut(s) 383
HinP1I GCGC 1 cut(s) 383
HinfI GANTC 4 cut(s) 98, 301, 447, 496
HpaII CCGG 1 cut(s) 465
HphI GGTGA 1 cut(s) 536
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 1 cut(s) 368
Hpy8I GTNNAC 1 cut(s) 129
HpyAV CCTTC 1 cut(s) 359
HpyCH4III ACNGT 2 cut(s) 151, 593
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 5 cut(s) 35, 310, 355, 420, 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 204
HpyF3I CTNAG 3 cut(s) 180, 194, 250
HpySE526I ACGT 1 cut(s) 387
Hsp92II CATG 4 cut(s) 105, 218, 424, 603
HspAI GCGC 1 cut(s) 383
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 2 cut(s) 171, 211
LmnI GCTCC 2 cut(s) 296, 621
LpnPI CCDG 4 cut(s) 100, 303, 318, 478
LweI GCATC 1 cut(s) 109
MaeI CTAG 1 cut(s) 584
MaeII ACGT 1 cut(s) 387
MaeIII GTNAC 2 cut(s) 232, 524
MalI GATC 2 cut(s) 173, 213
MboI GATC 2 cut(s) 171, 211
MboII GAAGA 7 cut(s) 72, 77, 166, 181, 230, 260, 556
MflI RGATCY 1 cut(s) 171
MhlI GDGCHC 1 cut(s) 626
MluCI AATT 1 cut(s) 337
MlyI GAGTC 1 cut(s) 490
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 3 cut(s) 133, 251, 434
MroXI GAANNNNTTC 2 cut(s) 173, 267
MseI TTAA 5 cut(s) 81, 162, 344, 390, 614
MslI CAYNNNNRTG 1 cut(s) 390
MspI CCGG 1 cut(s) 465
MwoI GCNNNNNNNGC 2 cut(s) 185, 204
NdeII GATC 2 cut(s) 171, 211
NlaIII CATG 4 cut(s) 105, 218, 424, 603
NlaIV GGNNCC 2 cut(s) 15, 375
NmuCI GTSAC 1 cut(s) 524
PdmI GAANNNNTTC 2 cut(s) 173, 267
PfeI GAWTC 3 cut(s) 98, 301, 447
PleI GAGTC 1 cut(s) 490
PpsI GAGTC 1 cut(s) 490
Psp124BI GAGCTC 1 cut(s) 626
PspN4I GGNNCC 2 cut(s) 15, 375
PspPI GGNCC 2 cut(s) 14, 503
PsuI RGATCY 1 cut(s) 171
RsaI GTAC 1 cut(s) 560
RsaNI GTAC 1 cut(s) 559
RseI CAYNNNNRTG 1 cut(s) 390
SacI GAGCTC 1 cut(s) 626
SaqAI TTAA 5 cut(s) 81, 162, 344, 390, 614
Sau3AI GATC 2 cut(s) 171, 211
Sau96I GGNCC 2 cut(s) 14, 503
SchI GAGTC 1 cut(s) 490
SduI GDGCHC 1 cut(s) 626
SetI ASST 7 cut(s) 200, 351, 390, 445, 526, 540, 626
SfaNI GCATC 1 cut(s) 109
SfcI CTRYAG 1 cut(s) 378
SinI GGWCC 1 cut(s) 14
SmiMI CAYNNNNRTG 1 cut(s) 390
SmlI CTYRAG 2 cut(s) 498, 633
SmoI CTYRAG 2 cut(s) 498, 633
Sse9I AATT 1 cut(s) 337
SspI AATATT 1 cut(s) 492
SspMI CTAG 1 cut(s) 584
SstI GAGCTC 1 cut(s) 626
TaaI ACNGT 2 cut(s) 151, 593
TaiI ACGT 1 cut(s) 390
TaqI TCGA 1 cut(s) 167
TasI AATT 1 cut(s) 337
TfiI GAWTC 3 cut(s) 98, 301, 447
Tru1I TTAA 5 cut(s) 81, 162, 344, 390, 614
Tru9I TTAA 5 cut(s) 81, 162, 344, 390, 614
TscAI CASTG 3 cut(s) 156, 195, 598
TseFI GTSAC 1 cut(s) 524
Tsp45I GTSAC 1 cut(s) 524
TspDTI ATGAA 3 cut(s) 264, 330, 557
TspRI CASTG 3 cut(s) 156, 195, 598
VpaK11BI GGWCC 1 cut(s) 14
XmiI GTMKAC 1 cut(s) 128
XmnI GAANNNNTTC 2 cut(s) 173, 267
XspI CTAG 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.