Rmu_sc0002381.1_g000009

Anthocyanidin reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002381.1
OG0025153
Physical Location & Seq
Forward (+)
39608 .. 40237
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002381.1_g000009.1.cds

Sequence Viewer

Length: 519 bp
atgctcattttgggtccaaacaagttctacaatgcaagcatactttctatgtccccaagaagagaagatggagttggatttaaagcctgccttgacgaatcatgtttgacaccaattgatgcctcgtatacttatggcaatgctttcacagtgggatatcttaaatcgaagatcttcgctgagaaagcagtgctgagctataacggctttgatcatgggattttagaagtggtaactcttccttgtggcttagtgggaggagaaactcttctttcatatttgcctataagcgtgggagcgattctgttgcaacttactggggacttattttctggcaattcattaaaccttctgcaagaatgtatcggattggttcctatagcgcacgttaatgatatttgccaagcccatattttctgcatggaacaactatcaatgagaggtagattctgttgtgcagtttccggtctctctatcaaagaaatggcaatgttcttccaaaagacttaccctgaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

172

Amino Acids

18.72

Weight (kDa)

5.33

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025153)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0195231
rosa_multiflora Rmu_sc0002381.1_g000009
rosa_samantha Rh7DG150200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 128
AjuI GAANNNNNNNTTGG 2 cut(s) 57, 89
AluBI AGCT 1 cut(s) 198
AluI AGCT 1 cut(s) 198
Alw26I GTCTC 1 cut(s) 473
Asp700I GAANNNNTTC 2 cut(s) 173, 267
AspLEI GCGC 1 cut(s) 385
AspS9I GGNCC 1 cut(s) 14
AvaII GGWCC 1 cut(s) 14
BccI CCATC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 220
BcgI CGANNNNNNTGC 2 cut(s) 289, 323
BclI TGATCA 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 473
BfmI CTRYAG 1 cut(s) 378
BglII AGATCT 1 cut(s) 171
BlpI GCTNAGC 1 cut(s) 194
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 2 cut(s) 15, 375
BmrI ACTGGG 1 cut(s) 327
BmsI GCATC 1 cut(s) 109
BmuI ACTGGG 1 cut(s) 327
Bpu1102I GCTNAGC 1 cut(s) 194
BsaI GGTCTC 1 cut(s) 473
BsaWI WCCGGW 1 cut(s) 464
Bse1I ACTGG 1 cut(s) 322
Bse3DI GCAATG 2 cut(s) 145, 495
BseMI GCAATG 2 cut(s) 145, 495
BseMII CTCAG 2 cut(s) 171, 185
BseNI ACTGG 1 cut(s) 322
BseRI GAGGAG 1 cut(s) 273
BsgI GTGCAG 1 cut(s) 477
BsiSI CCGG 1 cut(s) 465
BslFI GGGAC 2 cut(s) 37, 335
BsmAI GTCTC 1 cut(s) 473
BsmFI GGGAC 2 cut(s) 37, 335
Bso31I GGTCTC 1 cut(s) 473
Bsp143I GATC 2 cut(s) 171, 211
Bsp1720I GCTNAGC 1 cut(s) 194
BspCNI CTCAG 2 cut(s) 172, 186
BspLI GGNNCC 2 cut(s) 15, 375
BspTNI GGTCTC 1 cut(s) 473
BsrDI GCAATG 2 cut(s) 145, 495
BsrI ACTGG 1 cut(s) 322
BssMI GATC 2 cut(s) 171, 211
BssNAI GTATAC 1 cut(s) 129
Bst1107I GTATAC 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 3 cut(s) 55, 243, 273
BstC8I GCNNGC 2 cut(s) 37, 88
BstDEI CTNAG 3 cut(s) 180, 194, 250
BstHHI GCGC 1 cut(s) 385
BstKTI GATC 2 cut(s) 174, 214
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 2 cut(s) 171, 211
BstMWI GCNNNNNNNGC 2 cut(s) 185, 204
BstSFI CTRYAG 1 cut(s) 378
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
BstZ17I GTATAC 1 cut(s) 129
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 2 cut(s) 156, 195
Cac8I GCNNGC 2 cut(s) 37, 88
CfoI GCGC 1 cut(s) 385
Cfr13I GGNCC 1 cut(s) 14
CviAII CATG 3 cut(s) 102, 215, 421
CviJI RGCY 5 cut(s) 86, 198, 207, 249, 407
CviKI_1 RGCY 5 cut(s) 86, 198, 207, 249, 407
DdeI CTNAG 3 cut(s) 180, 194, 250
DpnI GATC 2 cut(s) 173, 213
DpnII GATC 2 cut(s) 171, 211
DraI TTTAAA 1 cut(s) 82
Eam1104I CTCTTC 3 cut(s) 55, 243, 273
EarI CTCTTC 3 cut(s) 55, 243, 273
Eco31I GGTCTC 1 cut(s) 473
Eco32I GATATC 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 14
EcoRV GATATC 1 cut(s) 158
FaeI CATG 3 cut(s) 105, 218, 424
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FaqI GGGAC 2 cut(s) 37, 335
FatI CATG 3 cut(s) 101, 214, 420
FbaI TGATCA 1 cut(s) 211
FblI GTMKAC 1 cut(s) 128
GlaI GCGC 1 cut(s) 384
HapII CCGG 1 cut(s) 465
HhaI GCGC 1 cut(s) 385
Hin1II CATG 3 cut(s) 105, 218, 424
Hin6I GCGC 1 cut(s) 383
HinP1I GCGC 1 cut(s) 383
HinfI GANTC 3 cut(s) 98, 301, 447
HpaII CCGG 1 cut(s) 465
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 1 cut(s) 368
Hpy8I GTNNAC 1 cut(s) 129
HpyAV CCTTC 1 cut(s) 359
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 5 cut(s) 35, 310, 355, 420, 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 204
HpyF3I CTNAG 3 cut(s) 180, 194, 250
HpySE526I ACGT 1 cut(s) 387
Hsp92II CATG 3 cut(s) 105, 218, 424
HspAI GCGC 1 cut(s) 383
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 2 cut(s) 171, 211
LmnI GCTCC 1 cut(s) 296
LpnPI CCDG 4 cut(s) 100, 303, 318, 478
LweI GCATC 1 cut(s) 109
MaeII ACGT 1 cut(s) 387
MaeIII GTNAC 1 cut(s) 232
MalI GATC 2 cut(s) 173, 213
MboI GATC 2 cut(s) 171, 211
MboII GAAGA 7 cut(s) 72, 77, 166, 181, 230, 260, 487
MfeI CAATTG 1 cut(s) 114
MflI RGATCY 1 cut(s) 171
MluCI AATT 2 cut(s) 114, 337
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 3 cut(s) 133, 251, 434
MroXI GAANNNNTTC 2 cut(s) 173, 267
MseI TTAA 4 cut(s) 81, 162, 344, 390
MslI CAYNNNNRTG 1 cut(s) 390
MspI CCGG 1 cut(s) 465
MunI CAATTG 1 cut(s) 114
MwoI GCNNNNNNNGC 2 cut(s) 185, 204
NdeII GATC 2 cut(s) 171, 211
NlaIII CATG 3 cut(s) 105, 218, 424
NlaIV GGNNCC 2 cut(s) 15, 375
PdmI GAANNNNTTC 2 cut(s) 173, 267
PfeI GAWTC 3 cut(s) 98, 301, 447
PspN4I GGNNCC 2 cut(s) 15, 375
PspPI GGNCC 1 cut(s) 14
PsuI RGATCY 1 cut(s) 171
RseI CAYNNNNRTG 1 cut(s) 390
SaqAI TTAA 4 cut(s) 81, 162, 344, 390
Sau3AI GATC 2 cut(s) 171, 211
Sau96I GGNCC 1 cut(s) 14
SetI ASST 4 cut(s) 200, 351, 390, 445
SfaNI GCATC 1 cut(s) 109
SfcI CTRYAG 1 cut(s) 378
SinI GGWCC 1 cut(s) 14
SmiMI CAYNNNNRTG 1 cut(s) 390
Sse9I AATT 2 cut(s) 114, 337
TaaI ACNGT 1 cut(s) 151
TaiI ACGT 1 cut(s) 390
TaqI TCGA 1 cut(s) 167
TasI AATT 2 cut(s) 114, 337
TfiI GAWTC 3 cut(s) 98, 301, 447
Tru1I TTAA 4 cut(s) 81, 162, 344, 390
Tru9I TTAA 4 cut(s) 81, 162, 344, 390
TscAI CASTG 2 cut(s) 156, 195
TspDTI ATGAA 2 cut(s) 264, 330
TspRI CASTG 2 cut(s) 156, 195
VpaK11BI GGWCC 1 cut(s) 14
XmiI GTMKAC 1 cut(s) 128
XmnI GAANNNNTTC 2 cut(s) 173, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.