RchiOBHm_Chr7g0198671

GTPase activator activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0019969
Physical Location & Seq
Reverse (-)
16615765 .. 16618661
2897 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 438 bp
ATGGCGCCTCGAGGGATGCTTGAAATTTTTATTTTTGGTGGAAGGGGTCTTAAAAATACAGACAAACCGGGTAATATATATTGCATCGCCAGCTACAAAGATGAGGAGAATAGGACTGAACCCGTAGAATGTGACAATTCTGATCCAGAGTGGAATGAGAAATTTCAGTTCACCATAGCTGATGATGACATTGATGATCTCAAGATTCAGGTAATAGACGAGGATGAGAATGGAAATGATGATGATCCAGGATATTGCAGTATTTCAATAGAAGGACTACTTGAGACGGGCTATAAAGCGGATATTGAGGGGACTGAATATGAGGTATTTAGGGGAGATGAAGCCTATGGAGATATTACCGTTTCCATGGCTTTTTTTCCAGAGGAGAACAATGATGATGAAGAACAGGAAGATCAGGAAGAACAGGAAGATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 C2 EF-hand_8

Protein Analysis

145

Amino Acids

16.55

Weight (kDa)

4.05

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 6 - 93 3.3e-13 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019969)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0198671
rosa_laevigata RLG00000003849
rosa_multiflora Rmu_sc0000220.1_g000016
rosa_roxburghii Rroxscaffold_3G00257540
rosa_rugosa Rorug07G0049100
rosa_samantha Rh7BG176200 Rh7CG182100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 9
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 1 cut(s) 299
AclWI GGATC 2 cut(s) 137, 239
AcsI RAATTY 2 cut(s) 24, 161
AcyI GRCGYC 1 cut(s) 5
AgsI TTSAA 2 cut(s) 23, 267
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 2 cut(s) 93, 179
AluI AGCT 2 cut(s) 93, 179
Alw26I GTCTC 1 cut(s) 278
AlwI GGATC 2 cut(s) 137, 239
Ama87I CYCGRG 1 cut(s) 9
ApoI RAATTY 2 cut(s) 24, 161
AspLEI GCGC 1 cut(s) 7
AsuC2I CCSGG 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 163
AvaI CYCGRG 1 cut(s) 9
BanI GGYRCC 1 cut(s) 4
BciT130I CCWGG 1 cut(s) 249
BcnI CCSGG 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 278
BfoI RGCGCY 1 cut(s) 8
Bme1390I CCNGG 2 cut(s) 69, 249
BmeT110I CYCGRG 1 cut(s) 9
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 69, 249
BmsI GCATC 2 cut(s) 6, 93
BpuEI CTTGAG 2 cut(s) 185, 302
BpuMI CCSGG 1 cut(s) 69
BsaBI GATNNNNATC 1 cut(s) 243
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 366
Bse8I GATNNNNATC 1 cut(s) 243
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 366
BseGI GGATG 2 cut(s) 21, 229
BseJI GATNNNNATC 1 cut(s) 243
BseRI GAGGAG 2 cut(s) 119, 398
BshNI GGYRCC 1 cut(s) 4
BsiHKCI CYCGRG 1 cut(s) 9
BsiSI CCGG 1 cut(s) 68
BslFI GGGAC 1 cut(s) 325
BsmAI GTCTC 1 cut(s) 278
BsmBI CGTCTC 1 cut(s) 278
BsmFI GGGAC 1 cut(s) 325
BsoBI CYCGRG 1 cut(s) 9
Bsp143I GATC 4 cut(s) 142, 196, 244, 412
Bsp19I CCATGG 1 cut(s) 366
BspACI CCGC 1 cut(s) 299
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 137, 239
BspT107I GGYRCC 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 366
BssMI GATC 4 cut(s) 142, 196, 244, 412
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 366
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 361
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 91
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 2 cut(s) 21, 229
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 4 cut(s) 145, 199, 247, 415
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 4 cut(s) 142, 196, 244, 412
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 2 cut(s) 67, 247
BtgI CCRYGG 1 cut(s) 366
BtgZI GCGATG 1 cut(s) 70
BtsCI GGATG 2 cut(s) 21, 229
Cac8I GCNNGC 1 cut(s) 91
CfoI GCGC 1 cut(s) 7
CviAII CATG 1 cut(s) 367
CviJI RGCY 5 cut(s) 93, 179, 291, 344, 371
CviKI_1 RGCY 5 cut(s) 93, 179, 291, 344, 371
DinI GGCGCC 1 cut(s) 6
DpnI GATC 4 cut(s) 144, 198, 246, 414
DpnII GATC 4 cut(s) 142, 196, 244, 412
Eco130I CCWWGG 1 cut(s) 366
Eco88I CYCGRG 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 366
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 366
Esp3I CGTCTC 1 cut(s) 278
FaeI CATG 1 cut(s) 370
FaiI YATR 7 cut(s) 77, 79, 176, 294, 321, 348, 368
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FaqI GGGAC 1 cut(s) 325
FatI CATG 1 cut(s) 366
FokI GGATG 2 cut(s) 28, 236
GlaI GCGC 1 cut(s) 6
HaeII RGCGCY 1 cut(s) 8
HapII CCGG 1 cut(s) 68
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 370
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 1 cut(s) 205
HpaII CCGG 1 cut(s) 68
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 4 cut(s) 146, 202, 380, 416
Hpy8I GTNNAC 1 cut(s) 171
HpyAV CCTTC 2 cut(s) 36, 266
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4V TGCA 2 cut(s) 84, 258
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 370
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 4 cut(s) 142, 196, 244, 412
LweI GCATC 2 cut(s) 6, 93
MaeIII GTNAC 1 cut(s) 131
MalI GATC 4 cut(s) 144, 198, 246, 414
MboI GATC 4 cut(s) 142, 196, 244, 412
MboII GAAGA 3 cut(s) 413, 422, 431
MluCI AATT 3 cut(s) 24, 136, 161
Mly113I GGCGCC 1 cut(s) 5
MnlI CCTC 7 cut(s) 5, 18, 97, 214, 301, 316, 376
MseI TTAA 1 cut(s) 51
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 2 cut(s) 69, 249
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 1 cut(s) 90
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 69
NcoI CCATGG 1 cut(s) 366
NdeII GATC 4 cut(s) 142, 196, 244, 412
NlaIII CATG 1 cut(s) 370
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 131
PaeR7I CTCGAG 1 cut(s) 9
PfeI GAWTC 1 cut(s) 205
PfoI TCCNGGA 1 cut(s) 247
PluTI GGCGCC 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 1 cut(s) 6
PspXI VCTCGAGB 1 cut(s) 9
SaqAI TTAA 1 cut(s) 51
Sau3AI GATC 4 cut(s) 142, 196, 244, 412
ScrFI CCNGG 2 cut(s) 69, 249
SetI ASST 4 cut(s) 95, 181, 213, 327
SfaNI GCATC 2 cut(s) 6, 93
SfoI GGCGCC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 9
SlaI CTCGAG 1 cut(s) 9
SmlI CTYRAG 3 cut(s) 9, 200, 281
SmoI CTYRAG 3 cut(s) 9, 200, 281
Sse9I AATT 3 cut(s) 24, 136, 161
SsiI CCGC 1 cut(s) 299
SspDI GGCGCC 1 cut(s) 4
StyD4I CCNGG 2 cut(s) 67, 247
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 1 cut(s) 361
TaqI TCGA 1 cut(s) 10
TasI AATT 3 cut(s) 24, 136, 161
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TseFI GTSAC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 2 cut(s) 354, 414
XapI RAATTY 2 cut(s) 24, 161
XhoI CTCGAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.