Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002094

Physical Location & Seq

Genomic Coordinates Reverse (-)

3533580 .. 3537695

Gene Structure 4116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0049100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGGTTGCACGTCGAGCAAAAGCGTGGACTCGAAGACGAGCAGGACGGCGCGGTGGCGATCCACCGGCATTGTTGGTCTCCGGGACTCTAAATTGAAGACATTTCCAGATGAAGTTCTTGATCTGGAGAGATCCGTACGCACTATTGATCTAACGCGCAATAAAATTGTTGATATTCCTATGGATATTGGCAAGTTAGTAAACCTGCAACGACTGGTCTTAGCTGAAAACCTCATTGATCGACTACCAATGCATGTGTCAAAATTAGAATCTCTAAAACTTATGACACTTGATGCAAATCGAATCACTTCCTTGCCTGATGAATTGGGACAGCTGGTGAGGCTTGAGCGGTTATCCATCTCTAAAAATTCTCTATCATACTTGCCTGAGACTATTGGAAGCTTGCGCAATTTACTGCTGTTAAATGTATCAAACAACAAGTTAAAGTCTCTTCCAGAATCAGTTGGGAGTTGCTTCTCTCTAGAAGAATTACAAGCAGATGGACTCACAACTATCATGATTTCGGTTGCTTCAGATAATTCAATTGAAGATCTTCCTGAATCCGTCTGCAATCTTGTTCACTTAAAGTCACTTTGCTTGGACAATAATAATGTGAAGCAGATACCTACCAATCTATTGAAAGACTGTAAAGCTCTGCAGAATATTTCCTTGCATGGAAATCCTATATCAATGGATCAGTTTCAGCAAATGGAAGGATTCCAAGAGTTTGAAGCAAGGAGGAAGAAGAAGTTCGACAAACAGATTGACTCAAATGTAATGATCAGTTCCAAAGGCCTTGATGAGGGTGTTGATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

272

Amino Acids

30.4

Weight (kDa)

6.45

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	44 - 102	2.8e-08	Leucine rich repeat
LRR_14	PF23598	47 - 121	7.9e-11	Leucine-rich repeat region
LRR_14	PF23598	85 - 167	1.4e-12	Leucine-rich repeat region
LRR_8	PF13855	91 - 148	2.3e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63240
fragaria_vesca	FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01911 FvH4_5g01911
malus_domestica	MD06G1076800.v1.1 MD14G1098200.v1.1
prunus_persica	Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1
pyrus_communis	pycom06g07430 pycom06g07440 pycom14g09640
rosa_chinensis	RchiOBHm_Chr7g0198611 RchiOBHm_Chr7g0198661
rosa_laevigata	RLG00000003850 RLG00000003857
rosa_multiflora	Rmu_co8077932.1_g000001 Rmu_co8274787.1_g000001 Rmu_co8506873.1_g000001 Rmu_sc0000220.1_g000017 Rmu_sc0004229.1_g000004
rosa_roxburghii	Rroxscaffold_3G00257550 Rroxscaffold_3G00257620
rosa_rugosa	Rorug07G0048500 Rorug07G0049000 Rorug07G0049100 Rorug07G0049100
rosa_samantha	Rh4BG123200 Rh7AG172000 Rh7AG172600 Rh7BG175400 Rh7BG176100 Rh7CG181500 Rh7CG182000 Rh7DG174500 Rh7DG174900 Rh7DG175200
rosa_wichuraiana	Rw7G015090 Rw7G015150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	407
Acc36I	ACCTGC	1 cut(s)	213
AccBSI	CCGCTC	1 cut(s)	349
AccII	CGCG	2 cut(s)	52, 157
AciI	CCGC	2 cut(s)	52, 349
AclWI	GGATC	3 cut(s)	54, 126, 702
AcsI	RAATTY	1 cut(s)	367
AcuI	CTGAAG	1 cut(s)	516
AfaI	GTAC	1 cut(s)	138
AfiI	CCNNNNNNNGG	1 cut(s)	802
AgsI	TTSAA	5 cut(s)	97, 543, 548, 640, 731
AjiI	CACGTC	1 cut(s)	12
AluBI	AGCT	4 cut(s)	224, 334, 402, 653
AluI	AGCT	4 cut(s)	224, 334, 402, 653
Alw26I	GTCTC	3 cut(s)	83, 383, 453
AlwI	GGATC	3 cut(s)	54, 126, 702
AoxI	GGCC	1 cut(s)	793
ApoI	RAATTY	1 cut(s)	367
Asp700I	GAANNNNTTC	3 cut(s)	307, 552, 749
AspLEI	GCGC	3 cut(s)	52, 159, 408
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	349
BbsI	GAAGAC	2 cut(s)	41, 104
BccI	CCATC	2 cut(s)	365, 494
BceAI	ACGGC	1 cut(s)	63
BclI	TGATCA	2 cut(s)	780, 811
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	3 cut(s)	83, 383, 453
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	656
BfuAI	ACCTGC	1 cut(s)	213
BglII	AGATCT	1 cut(s)	550
Bme1390I	CCNGG	1 cut(s)	83
BmgBI	CACGTC	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	283
BpiI	GAAGAC	2 cut(s)	41, 104
BpmI	CTGGAG	1 cut(s)	146
BpuEI	CTTGAG	1 cut(s)	365
BpuMI	CCSGG	1 cut(s)	83
BsaBI	GATNNNNATC	1 cut(s)	297
BsaI	GGTCTC	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	1 cut(s)	802
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	1 cut(s)	219
Bse8I	GATNNNNATC	1 cut(s)	297
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	802
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	1 cut(s)	219
Bsh1236I	CGCG	2 cut(s)	52, 157
BshFI	GGCC	1 cut(s)	795
BsiSI	CCGG	2 cut(s)	66, 82
BsiWI	CGTACG	1 cut(s)	136
BslFI	GGGAC	2 cut(s)	98, 342
BslI	CCNNNNNNNGG	1 cut(s)	802
BsmAI	GTCTC	3 cut(s)	83, 383, 453
BsmFI	GGGAC	2 cut(s)	98, 342
BsnI	GGCC	1 cut(s)	795
Bso31I	GGTCTC	1 cut(s)	83
Bsp143I	GATC	9 cut(s)	59, 121, 131, 148, 238, 550, 694, 780, 811
BspACI	CCGC	2 cut(s)	52, 349
BspANI	GGCC	1 cut(s)	795
BspCNI	CTCAG	1 cut(s)	379
BspFNI	CGCG	2 cut(s)	52, 157
BspHI	TCATGA	1 cut(s)	516
BspMAI	CTGCAG	1 cut(s)	660
BspMI	ACCTGC	1 cut(s)	213
BspPI	GGATC	3 cut(s)	54, 126, 702
BspTNI	GGTCTC	1 cut(s)	83
BsrBI	CCGCTC	1 cut(s)	349
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	219
BssAI	RCCGGY	1 cut(s)	65
BssMI	GATC	9 cut(s)	59, 121, 131, 148, 238, 550, 694, 780, 811
Bst4CI	ACNGT	1 cut(s)	647
Bst6I	CTCTTC	1 cut(s)	456
BstC8I	GCNNGC	1 cut(s)	404
BstDEI	CTNAG	2 cut(s)	220, 387
BstENI	CCTNNNNNAGG	1 cut(s)	800
BstFNI	CGCG	2 cut(s)	52, 157
BstHHI	GCGC	3 cut(s)	52, 159, 408
BstKTI	GATC	9 cut(s)	62, 124, 134, 151, 241, 553, 697, 783, 814
BstMAI	GTCTC	3 cut(s)	83, 383, 453
BstMBI	GATC	9 cut(s)	59, 121, 131, 148, 238, 550, 694, 780, 811
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 340
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	81
BstSFI	CTRYAG	1 cut(s)	656
BstUI	CGCG	2 cut(s)	52, 157
BstV2I	GAAGAC	2 cut(s)	41, 104
BstX2I	RGATCY	2 cut(s)	131, 550
BstYI	RGATCY	2 cut(s)	131, 550
BsuRI	GGCC	1 cut(s)	795
BtrI	CACGTC	1 cut(s)	12
BveI	ACCTGC	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	404
CciI	TCATGA	1 cut(s)	516
CfoI	GCGC	3 cut(s)	52, 159, 408
Cfr10I	RCCGGY	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	137
CspCI	CAANNNNNGTGG	2 cut(s)	52, 87
CviAII	CATG	3 cut(s)	254, 517, 674
CviJI	RGCY	6 cut(s)	224, 334, 343, 402, 653, 795
CviKI_1	RGCY	6 cut(s)	224, 334, 343, 402, 653, 795
CviQI	GTAC	1 cut(s)	137
DdeI	CTNAG	2 cut(s)	220, 387
DpnI	GATC	9 cut(s)	61, 123, 133, 150, 240, 552, 696, 782, 813
DpnII	GATC	9 cut(s)	59, 121, 131, 148, 238, 550, 694, 780, 811
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Eco147I	AGGCCT	1 cut(s)	795
Eco31I	GGTCTC	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	516
EcoNI	CCTNNNNNAGG	1 cut(s)	800
EcoT22I	ATGCAT	1 cut(s)	255
FaeI	CATG	3 cut(s)	257, 520, 677
FaiI	YATR	7 cut(s)	182, 255, 284, 379, 518, 675, 686
FaqI	GGGAC	2 cut(s)	98, 342
FatI	CATG	3 cut(s)	253, 516, 673
FbaI	TGATCA	2 cut(s)	780, 811
FspBI	CTAG	1 cut(s)	482
FspI	TGCGCA	1 cut(s)	407
GlaI	GCGC	3 cut(s)	51, 158, 407
GsuI	CTGGAG	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	795
HapII	CCGG	2 cut(s)	66, 82
HhaI	GCGC	3 cut(s)	52, 159, 408
Hin1II	CATG	3 cut(s)	257, 520, 677
Hin6I	GCGC	3 cut(s)	50, 157, 406
HinP1I	GCGC	3 cut(s)	50, 157, 406
HindIII	AAGCTT	1 cut(s)	400
HinfI	GANTC	9 cut(s)	29, 86, 269, 303, 458, 504, 560, 717, 767
HpaII	CCGG	2 cut(s)	66, 82
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	3 cut(s)	28, 202, 580
Hpy188I	TCNGA	1 cut(s)	535
Hpy188III	TCNNGA	7 cut(s)	107, 119, 125, 455, 482, 517, 557
Hpy8I	GTNNAC	3 cut(s)	28, 202, 580
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	707
HpyCH4III	ACNGT	1 cut(s)	647
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	7 cut(s)	9, 208, 253, 296, 570, 658, 673
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 340
HpyF3I	CTNAG	2 cut(s)	220, 387
HpySE526I	ACGT	1 cut(s)	11
Hsp92II	CATG	3 cut(s)	257, 520, 677
HspAI	GCGC	3 cut(s)	50, 157, 406
Ksp22I	TGATCA	2 cut(s)	780, 811
Kzo9I	GATC	9 cut(s)	59, 121, 131, 148, 238, 550, 694, 780, 811
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	482
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	1 cut(s)	588
MalI	GATC	9 cut(s)	61, 123, 133, 150, 240, 552, 696, 782, 813
MbiI	CCGCTC	1 cut(s)	349
MboI	GATC	9 cut(s)	59, 121, 131, 148, 238, 550, 694, 780, 811
MboII	GAAGA	8 cut(s)	46, 109, 443, 497, 545, 560, 754, 757
MfeI	CAATTG	1 cut(s)	543
MflI	RGATCY	2 cut(s)	131, 550
MluCI	AATT	9 cut(s)	92, 165, 263, 323, 367, 409, 488, 538, 543
MlyI	GAGTC	4 cut(s)	23, 80, 498, 761
MnlI	CCTC	4 cut(s)	242, 333, 732, 796
Mph1103I	ATGCAT	1 cut(s)	255
MroXI	GAANNNNTTC	3 cut(s)	307, 552, 749
MseI	TTAA	3 cut(s)	422, 443, 584
MspA1I	CMGCKG	1 cut(s)	334
MspI	CCGG	2 cut(s)	66, 82
MspR9I	CCNGG	1 cut(s)	83
MunI	CAATTG	1 cut(s)	543
MvnI	CGCG	2 cut(s)	52, 157
MwoI	GCNNNNNNNGC	2 cut(s)	15, 340
NciI	CCSGG	1 cut(s)	83
NdeII	GATC	9 cut(s)	59, 121, 131, 148, 238, 550, 694, 780, 811
NlaIII	CATG	3 cut(s)	257, 520, 677
NmuCI	GTSAC	1 cut(s)	588
NsbI	TGCGCA	1 cut(s)	407
NsiI	ATGCAT	1 cut(s)	255
NspI	RCATGY	1 cut(s)	257
PagI	TCATGA	1 cut(s)	516
PceI	AGGCCT	1 cut(s)	795
PdmI	GAANNNNTTC	3 cut(s)	307, 552, 749
PfeI	GAWTC	5 cut(s)	269, 303, 458, 560, 717
Pfl23II	CGTACG	1 cut(s)	136
PfoI	TCCNGGA	1 cut(s)	81
PleI	GAGTC	4 cut(s)	23, 80, 498, 761
PpsI	GAGTC	4 cut(s)	23, 80, 498, 761
PspLI	CGTACG	1 cut(s)	136
PstI	CTGCAG	1 cut(s)	660
PsuI	RGATCY	2 cut(s)	131, 550
PvuII	CAGCTG	1 cut(s)	334
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
SaqAI	TTAA	3 cut(s)	422, 443, 584
Sau3AI	GATC	9 cut(s)	59, 121, 131, 148, 238, 550, 694, 780, 811
SchI	GAGTC	4 cut(s)	23, 80, 498, 761
ScrFI	CCNGG	1 cut(s)	83
SetI	ASST	8 cut(s)	14, 207, 226, 234, 336, 404, 628, 655
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	1 cut(s)	656
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	9 cut(s)	92, 165, 263, 323, 367, 409, 488, 538, 543
SseBI	AGGCCT	1 cut(s)	795
SsiI	CCGC	2 cut(s)	52, 349
SspI	AATATT	1 cut(s)	664
SspMI	CTAG	1 cut(s)	482
StuI	AGGCCT	1 cut(s)	795
StyD4I	CCNGG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	647
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	5 cut(s)	14, 32, 241, 301, 753
TasI	AATT	9 cut(s)	92, 165, 263, 323, 367, 409, 488, 538, 543
TfiI	GAWTC	5 cut(s)	269, 303, 458, 560, 717
Tru1I	TTAA	3 cut(s)	422, 443, 584
Tru9I	TTAA	3 cut(s)	422, 443, 584
TseFI	GTSAC	1 cut(s)	588
Tsp45I	GTSAC	1 cut(s)	588
TspDTI	ATGAA	2 cut(s)	126, 336
TspGWI	ACGGA	2 cut(s)	124, 553
XagI	CCTNNNNNAGG	1 cut(s)	800
XapI	RAATTY	1 cut(s)	367
XbaI	TCTAGA	1 cut(s)	481
XceI	RCATGY	1 cut(s)	257
XmnI	GAANNNNTTC	3 cut(s)	307, 552, 749
XspI	CTAG	1 cut(s)	482
Zsp2I	ATGCAT	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.