Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002094

Physical Location & Seq

Genomic Coordinates Forward (+)

14965212 .. 14972502

Gene Structure 7291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG172600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2970 bp

ATGATTTACACGGATTTGGAAACTGGGAAAAAGTTCTTCTCCAAGGACGATGTTATACGCTATACTAAAAAAGCCACCAACCGTGGTGAAGAGCCTCAGCGTACAAATACCAAAAAACCCTCGGATAGAAGTCATTCGCAACTGGCAGCAAACACAGATGAATATCCTGAATGGTTGCCAGATGGTTGGAAAGTCGAATTGAGAACTCGAAAAACTGGCATTCAAGTTGGAAGGGAGTACAAGTGTTACATTGATCCGTTGACGGAATGTACATTTTATTCCAAGCCAGAGGTATTTCGATACCTGAAAACTGTAAAGCGCAAGAGCTGCAAATCCAGAAGTCACAAAATGGTTGTGGTTGAGAAGCATAATGTGGAAGATTTACCGCCAGGGTGGATATTGGAGGTCAAAGTTAGAAAGGTTGCAAATCGAATTAGAAGAGATCCGTATTACACTGATCCAGTGCATGGATATGTCTTCCGCTCCAAAAAGGAAGTTATCCGTTACCTACAAACTGGAGAGACCAGTAAACATACAATCAAACCAAAGAGCACGGGCACCAATGATCTAAAGTTGACTAATGATGAAATTACACTGTCATCTGCAACGAAAAAGCAAAAATTGAAGCACCCTGTCACCAGGCAGCAGCTTTCTGAAGCTAAAAAGAGTTATGAACTGAGTGGCCTAGACTTACAAGAAACTGAAAACTCCCAATTGCAAGACAAGAGGCCCGCTGAAAGCATATGTGCTTTGGCTCCAGTTACTGAGGTTATCCTAGAGAAGCATTTCACTGAGAATCTGGTTGAAGAATGTGTAGAAACTAAGGGAGACTGTTCCCCAAGATGGTCATCACAGCCAAAAGCTGAACCATCTAGCAAACACGAAGGCAAAAGGTCATCACAACCGCAAGCTGTACTCTCTAACAAACGTGAGGCTAAAAGGTCCAAGTTGCAAGACGAGAGGGTAACTGATGAAAGCAAAGCTGCTTTGGCTCCGACAGCTGAGGCAGTCCCACATAAGCATTTAAGTGAGAGTGTGGTTCAAAATTGTGCCAAAACCAAGGAAGATTGTTCTCCAAGCAAGTCATTACAGCCAAAAGCTGAACTCTCCAACAAGTGTGAAGATAAAATTGCATTGGTTGGAGTTGATGGCTCCTCAACAGATCCTGGCAAAGTGGTTTTTTCTGAAGATGACCCTGCTTTGACTCCTGCTGCTAACACCTTGAATAAGAACTCACATATGAGTCAGATGGAAAGGAGAAACACAAGGAGATCCCAAATAGATGCAAGAAAATCGAAACAGAATGAAAAGCTTAATTTGCCACGTCGGTCCTCAAAACGACTGGCTGGGCTTGAACCAGAGCCAGTAAATAGCCTGGTTTCCACTGTTCAGGCTCTTCAAGTTACAACTAGAAAGTCTAGTAAAGGTGATGGCAGTCGAGATGCCGGTTTGGCTTTAGATGATTTTGTACATAGAGCATCTCAGCAGCTTGGGGATGAATCAGAAACAGAGGTTGCACATCATACTATAGCTGGAATAATATCTACAGTACAAGGAGAGCCATTGAGCAAGGTCAAGAGGCCATTTGATGGTCTTGAAGTACAGCCTGTAGATACCTTGGTTTCCAATGAACAAACTCTTCACATTGCAACTAGAAAGTCTAGTAGAGGTGATGCAAGTCAAGATGCGGGTTTGGCTTCAGATGATTTTATCAATGGAGCATCTCTGCAGCTTGGGGATGCATCAGAACCGGAGGCTGCACATGATAGGTTAACTGACATAAACTGTACATCACATGGAGAGTCATTAAACAAGGGCAAGACATTTCTTGATGACCAAGTGGTTCCTAAAGAGCAACATCATAGGCTGGAACCTGAGAAAATGGATGCTGAGAAGCCTGGACCAGAGCTCTGCTTTCTGTTTGGATCAGACCCATGCTTAGAATTTGCCTTCAAAACCCTTACTGGCGAATTGCCAATAGCTGATGCTGTGGATAACGAATCTATTTTGAAACCTGCAGCTGATACAGTGCAAAAAGAGAACACACTTGAAACTGGGCGCTGCAGTAGAAAACCAAGGGCAATTTCGAACAAATCTAAGAAAGCTAAAGAACTTAAGTTACCTCATCGGACTTCAAAACGGCTGGCTGGGCTTGAACCTGAGCTGCTTGCCAAACCTATGTCCAGTGAAAGAGGTCTTCGAAATGCAATGGAAAAGTCCTGTAAAAGTAAAGCCCTCCAAGCTGTAGATTCTGCACATGAATCATCTCAGCAGTTTGAGGCTGGGCAAGAGATCAAGGTTGTTCATGATTTGTGTACTGTTATAAACCCTTCAATTCATGAGGAATCATTGAACAAGATTGAGAAATCTCTCAAGGACGAACCTCTTCCTGAGGAGAAACCCCGTGAGTTGGAAATTGAGAAGGCAGCTGTTGAGAATCCAGTGTCACAGTTTTCATTCCCTTTCCTGGATACTTGGTCTGATCCATGCCTTGATTTTGCATTTAAGACCCTTACAGGTGAAATTCCGATAGAGGATGATTTGTTTCAGGGTTACTTTCAGGAAAACCTTGTCACCTCTCACAACCAAAGAGATAGCTTGGCACTGCCAGATTTTGGCTCACCTAATGTTTTCCAAAGTGACATATCACCTCAGTTTGATGCACCAGAACAGTCTGTCTCGGGCCAATTGTTTCCCATGAATTCTTCTTTGCCACCTGCCGGAAATGTGAGCTTGTCAAATTGCAATGGGGTTGGGTTCGGCCAACAGTTGGCCACGAATTCTTCATTTCTGCCTGCAGGAAATTTGAGATTTTCAAGTGGCAGTGGGGTTGGTTCAGGCCAACATTTATCCGTGAATTCTTCATTTTTACCTGCAGGAAATGTGGGCCAGGCAAATTGGAGTGGGATTGGTACACAGAACCCTTGCTTAGGAAGCAAAAAGGATTTTCATGGAAAGGTGAAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

989

Amino Acids

109.35

Weight (kDa)

6.97

Isoelectric Point (pI)

50.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	57 - 106	9.3e-06	Methyl-CpG binding domain
MBD	PF01429	128 - 174	2.6e-06	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63240
fragaria_vesca	FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01911 FvH4_5g01911
malus_domestica	MD06G1076800.v1.1 MD14G1098200.v1.1
prunus_persica	Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1
pyrus_communis	pycom06g07430 pycom06g07440 pycom14g09640
rosa_chinensis	RchiOBHm_Chr7g0198611 RchiOBHm_Chr7g0198661
rosa_laevigata	RLG00000003850 RLG00000003857
rosa_multiflora	Rmu_co8077932.1_g000001 Rmu_co8274787.1_g000001 Rmu_co8506873.1_g000001 Rmu_sc0000220.1_g000017 Rmu_sc0004229.1_g000004
rosa_roxburghii	Rroxscaffold_3G00257550 Rroxscaffold_3G00257620
rosa_rugosa	Rorug07G0048500 Rorug07G0049000 Rorug07G0049100 Rorug07G0049100
rosa_samantha	Rh4BG123200 Rh7AG172000 Rh7AG172600 Rh7BG175400 Rh7BG176100 Rh7CG181500 Rh7CG182000 Rh7DG174500 Rh7DG174900 Rh7DG175200
rosa_wichuraiana	Rw7G015090 Rw7G015150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2324
AarI	CACCTGC	1 cut(s)	2725
Acc36I	ACCTGC	3 cut(s)	2023, 2725, 2881
AccB1I	GGYRCC	1 cut(s)	557
AccB7I	CCANNNNNTGG	4 cut(s)	467, 1589, 2615, 2770
AccBSI	CCGCTC	1 cut(s)	483
AciI	CCGC	5 cut(s)	386, 481, 732, 905, 1688
AclWI	GGATC	7 cut(s)	248, 437, 452, 1157, 1266, 1933, 2477
AcoI	YGGCCR	2 cut(s)	2761, 2772
AcsI	RAATTY	6 cut(s)	1943, 2523, 2701, 2779, 2803, 2857
AcuI	CTGAAG	3 cut(s)	675, 1206, 1683
AfiI	CCNNNNNNNGG	9 cut(s)	467, 843, 1589, 2410, 2467, 2615, 2720, 2770, 2930
AflII	CTTAAG	1 cut(s)	2114
AjiI	CACGTC	1 cut(s)	1325
AjnI	CCWGG	7 cut(s)	388, 638, 1165, 1374, 1897, 2466, 2889
AjuI	GAANNNNNNNTTGG	2 cut(s)	2068, 2100
Alw21I	GWGCWC	2 cut(s)	554, 1911
Alw26I	GTCTC	3 cut(s)	515, 822, 2683
AlwI	GGATC	7 cut(s)	248, 437, 452, 1157, 1266, 1933, 2477
AlwNI	CAGNNNCTG	2 cut(s)	764, 1166
Ama87I	CYCGRG	1 cut(s)	2680
AoxI	GGCC	8 cut(s)	682, 728, 1580, 2683, 2761, 2772, 2839, 2887
ApoI	RAATTY	6 cut(s)	1943, 2523, 2701, 2779, 2803, 2857
Asp700I	GAANNNNTTC	4 cut(s)	32, 133, 785, 2385
AspLEI	GCGC	2 cut(s)	321, 2061
AspS9I	GGNCC	6 cut(s)	729, 942, 1329, 1901, 2683, 2887
AsuHPI	GGTGA	8 cut(s)	98, 628, 1439, 1682, 2531, 2566, 2613, 2640
AsuII	TTCGAA	2 cut(s)	2087, 2200
AvaI	CYCGRG	1 cut(s)	2680
AvaII	GGWCC	3 cut(s)	942, 1329, 1901
AxyI	CCTNAGG	1 cut(s)	2391
BaeGI	GKGCMC	1 cut(s)	560
BaeI	ACNNNNGTAYC	2 cut(s)	1605, 1638
BalI	TGGCCA	1 cut(s)	2774
BanI	GGYRCC	1 cut(s)	557
BanII	GRGCYC	1 cut(s)	1911
BbsI	GAAGAC	2 cut(s)	469, 2189
Bbv12I	GWGCWC	2 cut(s)	554, 1911
BbvCI	CCTCAGC	2 cut(s)	96, 1002
BccI	CCATC	7 cut(s)	176, 837, 877, 1142, 1243, 1424, 1583
BceAI	ACGGC	1 cut(s)	2156
BcgI	CGANNNNNNTGC	2 cut(s)	1275, 1309
BciT130I	CCWGG	7 cut(s)	390, 640, 1167, 1376, 1899, 2468, 2891
BciVI	GTATCC	1 cut(s)	2464
BcoDI	GTCTC	3 cut(s)	515, 822, 2683
BfaI	CTAG	7 cut(s)	686, 776, 873, 1410, 1419, 1653, 1662
BfmI	CTRYAG	9 cut(s)	1527, 1545, 1608, 1727, 2016, 2062, 2244, 2796, 2874
BfoI	RGCGCY	1 cut(s)	2062
BfrI	CTTAAG	1 cut(s)	2114
BfuAI	ACCTGC	3 cut(s)	2023, 2725, 2881
BfuI	GTATCC	1 cut(s)	2464
BglI	GCCNNNNNGGC	1 cut(s)	1451
Bme1390I	CCNGG	7 cut(s)	390, 640, 1167, 1376, 1899, 2468, 2891
Bme18I	GGWCC	3 cut(s)	942, 1329, 1901
BmeT110I	CYCGRG	1 cut(s)	2680
BmgBI	CACGTC	1 cut(s)	1325
BmgT120I	GGNCC	6 cut(s)	729, 942, 1329, 1901, 2683, 2887
BmiI	GGNNCC	6 cut(s)	559, 756, 993, 1153, 1845, 1872
BmrFI	CCNGG	7 cut(s)	390, 640, 1167, 1376, 1899, 2468, 2891
BmrI	ACTGGG	2 cut(s)	33, 2064
BmuI	ACTGGG	2 cut(s)	33, 2064
BpiI	GAAGAC	2 cut(s)	469, 2189
BpmI	CTGGAG	2 cut(s)	537, 741
Bpu10I	CCTNAGC	4 cut(s)	96, 1002, 2160, 2929
Bpu14I	TTCGAA	2 cut(s)	2087, 2200
BpuEI	CTTGAG	1 cut(s)	2357
BsaBI	GATNNNNATC	2 cut(s)	162, 847
BsaI	GGTCTC	1 cut(s)	515
BsaJI	CCNNGG	7 cut(s)	42, 82, 120, 389, 1059, 1617, 2075
BsaWI	WCCGGW	1 cut(s)	1750
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bsc4I	CCNNNNNNNGG	9 cut(s)	467, 843, 1589, 2410, 2467, 2615, 2720, 2770, 2930
Bse118I	RCCGGY	1 cut(s)	1445
Bse21I	CCTNAGG	1 cut(s)	2391
Bse3DI	GCAATG	3 cut(s)	1644, 2214, 2752
Bse8I	GATNNNNATC	2 cut(s)	162, 847
BseBI	CCWGG	7 cut(s)	390, 640, 1167, 1376, 1899, 2468, 2891
BseDI	CCNNGG	7 cut(s)	42, 82, 120, 389, 1059, 1617, 2075
BseGI	GGATG	4 cut(s)	1501, 1744, 1891, 2542
BseJI	GATNNNNATC	2 cut(s)	162, 847
BseLI	CCNNNNNNNGG	9 cut(s)	467, 843, 1589, 2410, 2467, 2615, 2720, 2770, 2930
BseMI	GCAATG	3 cut(s)	1644, 2214, 2752
BseRI	GAGGAG	2 cut(s)	1144, 2408
BseSI	GKGCMC	1 cut(s)	560
BseYI	CCCAGC	3 cut(s)	1346, 2147, 2282
BsgI	GTGCAG	2 cut(s)	1743, 2238
BshFI	GGCC	8 cut(s)	684, 730, 1582, 2685, 2763, 2774, 2841, 2889
BshNI	GGYRCC	1 cut(s)	557
BsiHKAI	GWGCWC	2 cut(s)	554, 1911
BsiHKCI	CYCGRG	1 cut(s)	2680
BsiSI	CCGG	3 cut(s)	1446, 1751, 2721
BslFI	GGGAC	1 cut(s)	995
BslI	CCNNNNNNNGG	9 cut(s)	467, 843, 1589, 2410, 2467, 2615, 2720, 2770, 2930
BsmAI	GTCTC	3 cut(s)	515, 822, 2683
BsmFI	GGGAC	1 cut(s)	995
BsmI	GAATGC	1 cut(s)	219
BsnI	GGCC	8 cut(s)	684, 730, 1582, 2685, 2763, 2774, 2841, 2889
Bso31I	GGTCTC	1 cut(s)	515
BsoBI	CYCGRG	1 cut(s)	2680
Bsp119I	TTCGAA	2 cut(s)	2087, 2200
Bsp1286I	GDGCHC	3 cut(s)	554, 560, 1911
Bsp1407I	TGTACA	3 cut(s)	269, 1468, 1787
Bsp143I	GATC	9 cut(s)	253, 442, 457, 565, 1162, 1271, 1925, 2292, 2482
BspACI	CCGC	5 cut(s)	386, 481, 732, 905, 1688
BspANI	GGCC	8 cut(s)	684, 730, 1582, 2685, 2763, 2774, 2841, 2889
BspHI	TCATGA	2 cut(s)	2305, 2338
BspLI	GGNNCC	6 cut(s)	559, 756, 993, 1153, 1845, 1872
BspMAI	CTGCAG	5 cut(s)	1731, 2020, 2066, 2800, 2878
BspMI	ACCTGC	3 cut(s)	2023, 2725, 2881
BspPI	GGATC	7 cut(s)	248, 437, 452, 1157, 1266, 1933, 2477
BspQI	GCTCTTC	2 cut(s)	84, 1401
BspT104I	TTCGAA	2 cut(s)	2087, 2200
BspT107I	GGYRCC	1 cut(s)	557
BspTI	CTTAAG	1 cut(s)	2114
BspTNI	GGTCTC	1 cut(s)	515
BsrBI	CCGCTC	1 cut(s)	483
BsrDI	GCAATG	3 cut(s)	1644, 2214, 2752
BsrFI	RCCGGY	1 cut(s)	1445
BsrGI	TGTACA	3 cut(s)	269, 1468, 1787
BssAI	RCCGGY	1 cut(s)	1445
BssECI	CCNNGG	7 cut(s)	42, 82, 120, 389, 1059, 1617, 2075
BssMI	GATC	9 cut(s)	253, 442, 457, 565, 1162, 1271, 1925, 2292, 2482
BssT1I	CCWWGG	4 cut(s)	42, 1059, 1617, 2075
Bst2UI	CCWGG	7 cut(s)	390, 640, 1167, 1376, 1899, 2468, 2891
Bst6I	CTCTTC	5 cut(s)	84, 433, 1401, 1644, 2391
BstAFI	CTTAAG	1 cut(s)	2114
BstAPI	GCANNNNNTGC	1 cut(s)	327
BstAUI	TGTACA	3 cut(s)	269, 1468, 1787
BstBI	TTCGAA	2 cut(s)	2087, 2200
BstC8I	GCNNGC	5 cut(s)	732, 909, 2145, 2169, 2796
BstDSI	CCRYGG	1 cut(s)	82
BstENI	CCTNNNNNAGG	1 cut(s)	2928
BstF5I	GGATG	4 cut(s)	1501, 1744, 1891, 2542
BstH2I	RGCGCY	1 cut(s)	2062
BstHHI	GCGC	2 cut(s)	321, 2061
BstKTI	GATC	9 cut(s)	256, 445, 460, 568, 1165, 1274, 1928, 2295, 2485
BstMAI	GTCTC	3 cut(s)	515, 822, 2683
BstMBI	GATC	9 cut(s)	253, 442, 457, 565, 1162, 1271, 1925, 2292, 2482
BstMWI	GCNNNNNNNGC	9 cut(s)	327, 989, 998, 1318, 1451, 1694, 2149, 2240, 2934
BstNI	CCWGG	7 cut(s)	390, 640, 1167, 1376, 1899, 2468, 2891
BstSCI	CCNGG	7 cut(s)	388, 638, 1165, 1374, 1897, 2466, 2889
BstSFI	CTRYAG	9 cut(s)	1527, 1545, 1608, 1727, 2016, 2062, 2244, 2796, 2874
BstSLI	GKGCMC	1 cut(s)	560
BstV2I	GAAGAC	2 cut(s)	469, 2189
BstX2I	RGATCY	3 cut(s)	442, 1162, 1271
BstXI	CCANNNNNNTGG	1 cut(s)	186
BstYI	RGATCY	3 cut(s)	442, 1162, 1271
Bsu36I	CCTNAGG	1 cut(s)	2391
BsuI	GTATCC	1 cut(s)	2464
BsuRI	GGCC	8 cut(s)	684, 730, 1582, 2685, 2763, 2774, 2841, 2889
BtgI	CCRYGG	1 cut(s)	82
BtrI	CACGTC	1 cut(s)	1325
BtsCI	GGATG	4 cut(s)	1501, 1744, 1891, 2542
BtsI	GCAGTG	2 cut(s)	2603, 2830
BveI	ACCTGC	3 cut(s)	2023, 2725, 2881
Cac8I	GCNNGC	5 cut(s)	732, 909, 2145, 2169, 2796
CaiI	CAGNNNCTG	2 cut(s)	764, 1166
CciI	TCATGA	2 cut(s)	2305, 2338
CfoI	GCGC	2 cut(s)	321, 2061
Cfr10I	RCCGGY	1 cut(s)	1445
Cfr13I	GGNCC	6 cut(s)	729, 942, 1329, 1901, 2683, 2887
DpnI	GATC	9 cut(s)	255, 444, 459, 567, 1164, 1273, 1927, 2294, 2484
DpnII	GATC	9 cut(s)	253, 442, 457, 565, 1162, 1271, 1925, 2292, 2482
EaeI	YGGCCR	2 cut(s)	2761, 2772
Eam1104I	CTCTTC	5 cut(s)	84, 433, 1401, 1644, 2391
EarI	CTCTTC	5 cut(s)	84, 433, 1401, 1644, 2391
Ecl136II	GAGCTC	1 cut(s)	1909
Eco130I	CCWWGG	4 cut(s)	42, 1059, 1617, 2075
Eco24I	GRGCYC	1 cut(s)	1911
Eco31I	GGTCTC	1 cut(s)	515
Eco47I	GGWCC	3 cut(s)	942, 1329, 1901
Eco53kI	GAGCTC	1 cut(s)	1909
Eco57I	CTGAAG	3 cut(s)	675, 1206, 1683
Eco81I	CCTNAGG	1 cut(s)	2391
Eco88I	CYCGRG	1 cut(s)	2680
EcoICRI	GAGCTC	1 cut(s)	1909
EcoNI	CCTNNNNNAGG	1 cut(s)	2928
EcoRI	GAATTC	3 cut(s)	2701, 2779, 2857
EcoRII	CCWGG	7 cut(s)	388, 638, 1165, 1374, 1897, 2466, 2889
EcoT14I	CCWWGG	4 cut(s)	42, 1059, 1617, 2075
EcoT22I	ATGCAT	1 cut(s)	1744
EcoT38I	GRGCYC	1 cut(s)	1911
ErhI	CCWWGG	4 cut(s)	42, 1059, 1617, 2075
FaqI	GGGAC	1 cut(s)	995
FauI	CCCGC	2 cut(s)	739, 1681
FauNDI	CATATG	2 cut(s)	743, 1239
FokI	GGATG	4 cut(s)	1508, 1751, 1898, 2549
FriOI	GRGCYC	1 cut(s)	1911
FspBI	CTAG	7 cut(s)	686, 776, 873, 1410, 1419, 1653, 1662
GlaI	GCGC	2 cut(s)	320, 2060
GsaI	CCCAGC	3 cut(s)	1350, 2151, 2286
GsuI	CTGGAG	2 cut(s)	537, 741
HaeII	RGCGCY	1 cut(s)	2062
HaeIII	GGCC	8 cut(s)	684, 730, 1582, 2685, 2763, 2774, 2841, 2889
HapII	CCGG	3 cut(s)	1446, 1751, 2721
HhaI	GCGC	2 cut(s)	321, 2061
Hin6I	GCGC	2 cut(s)	319, 2059
HinP1I	GCGC	2 cut(s)	319, 2059
HincII	GTYRAC	3 cut(s)	261, 576, 1773
HindII	GTYRAC	3 cut(s)	261, 576, 1773
HindIII	AAGCTT	1 cut(s)	1310
HpaI	GTTAAC	1 cut(s)	1773
HpaII	CCGG	3 cut(s)	1446, 1751, 2721
HphI	GGTGA	8 cut(s)	98, 628, 1439, 1682, 2531, 2566, 2613, 2640
Hpy166II	GTNNAC	6 cut(s)	261, 530, 576, 1773, 2316, 2915
Hpy8I	GTNNAC	6 cut(s)	261, 530, 576, 1773, 2316, 2915
Hpy99I	CGWCG	1 cut(s)	1329
HpyAV	CCTTC	5 cut(s)	225, 878, 1960, 2340, 2416
HpyCH4IV	ACGT	2 cut(s)	928, 1324
HpyF10VI	GCNNNNNNNGC	9 cut(s)	327, 989, 998, 1318, 1451, 1694, 2149, 2240, 2934
HpySE526I	ACGT	2 cut(s)	928, 1324
HspAI	GCGC	2 cut(s)	319, 2059
KspAI	GTTAAC	1 cut(s)	1773
Kzo9I	GATC	9 cut(s)	253, 442, 457, 565, 1162, 1271, 1925, 2292, 2482
LguI	GCTCTTC	2 cut(s)	84, 1401
LmnI	GCTCC	5 cut(s)	488, 760, 997, 1157, 1718
MaeI	CTAG	7 cut(s)	686, 776, 873, 1410, 1419, 1653, 1662
MaeII	ACGT	2 cut(s)	928, 1324
MalI	GATC	9 cut(s)	255, 444, 459, 567, 1164, 1273, 1927, 2294, 2484
MbiI	CCGCTC	1 cut(s)	483
MboI	GATC	9 cut(s)	253, 442, 457, 565, 1162, 1271, 1925, 2292, 2482
MfeI	CAATTG	2 cut(s)	713, 2687
MflI	RGATCY	3 cut(s)	442, 1162, 1271
MhlI	GDGCHC	3 cut(s)	554, 560, 1911
MlsI	TGGCCA	1 cut(s)	2774
MluNI	TGGCCA	1 cut(s)	2774
MlyI	GAGTC	3 cut(s)	1198, 1252, 1811
MmeI	TCCRAC	6 cut(s)	167, 208, 1019, 1120, 1134, 2391
Mox20I	TGGCCA	1 cut(s)	2774
Mph1103I	ATGCAT	1 cut(s)	1744
MroXI	GAANNNNTTC	4 cut(s)	32, 133, 785, 2385
MscI	TGGCCA	1 cut(s)	2774
MseI	TTAA	6 cut(s)	1025, 1314, 1772, 1808, 2115, 2505
MslI	CAYNNNNRTG	2 cut(s)	471, 1026
Msp20I	TGGCCA	1 cut(s)	2774
MspA1I	CMGCKG	4 cut(s)	734, 1001, 2021, 2429
MspCI	CTTAAG	1 cut(s)	2114
MspI	CCGG	3 cut(s)	1446, 1751, 2721
MspR9I	CCNGG	7 cut(s)	390, 640, 1167, 1376, 1899, 2468, 2891
MunI	CAATTG	2 cut(s)	713, 2687
Mva1269I	GAATGC	1 cut(s)	219
MvaI	CCWGG	7 cut(s)	390, 640, 1167, 1376, 1899, 2468, 2891
MwoI	GCNNNNNNNGC	9 cut(s)	327, 989, 998, 1318, 1451, 1694, 2149, 2240, 2934
NdeI	CATATG	2 cut(s)	743, 1239
NdeII	GATC	9 cut(s)	253, 442, 457, 565, 1162, 1271, 1925, 2292, 2482
NlaIV	GGNNCC	6 cut(s)	559, 756, 993, 1153, 1845, 1872
NmuCI	GTSAC	5 cut(s)	341, 634, 2445, 2572, 2639
NsiI	ATGCAT	1 cut(s)	1744
NspV	TTCGAA	2 cut(s)	2087, 2200
PagI	TCATGA	2 cut(s)	2305, 2338
PaqCI	CACCTGC	1 cut(s)	2725
PciSI	GCTCTTC	2 cut(s)	84, 1401
PctI	GAATGC	1 cut(s)	219
PdmI	GAANNNNTTC	4 cut(s)	32, 133, 785, 2385
PfeI	GAWTC	7 cut(s)	796, 1499, 2000, 2249, 2261, 2345, 2437
PflMI	CCANNNNNTGG	4 cut(s)	467, 1589, 2615, 2770
PfoI	TCCNGGA	1 cut(s)	2466
PleI	GAGTC	3 cut(s)	1198, 1251, 1810
PpsI	GAGTC	3 cut(s)	1198, 1251, 1810
PsiI	TTATAA	1 cut(s)	2324
Psp124BI	GAGCTC	1 cut(s)	1911
Psp6I	CCWGG	7 cut(s)	388, 638, 1165, 1374, 1897, 2466, 2889
PspFI	CCCAGC	3 cut(s)	1346, 2147, 2282
PspGI	CCWGG	7 cut(s)	388, 638, 1165, 1374, 1897, 2466, 2889
PspN4I	GGNNCC	6 cut(s)	559, 756, 993, 1153, 1845, 1872
PspPI	GGNCC	6 cut(s)	729, 942, 1329, 1901, 2683, 2887
PsrI	GAACNNNNNNTAC	2 cut(s)	2103, 2135
PstI	CTGCAG	5 cut(s)	1731, 2020, 2066, 2800, 2878
PstNI	CAGNNNCTG	2 cut(s)	764, 1166
PsuI	RGATCY	3 cut(s)	442, 1162, 1271
PvuII	CAGCTG	3 cut(s)	1001, 2021, 2429
RseI	CAYNNNNRTG	2 cut(s)	471, 1026
SacI	GAGCTC	1 cut(s)	1911
SapI	GCTCTTC	2 cut(s)	84, 1401
SaqAI	TTAA	6 cut(s)	1025, 1314, 1772, 1808, 2115, 2505
Sau3AI	GATC	9 cut(s)	253, 442, 457, 565, 1162, 1271, 1925, 2292, 2482
Sau96I	GGNCC	6 cut(s)	729, 942, 1329, 1901, 2683, 2887
SbfI	CCTGCAGG	2 cut(s)	2800, 2878
SchI	GAGTC	3 cut(s)	1198, 1252, 1811
ScrFI	CCNGG	7 cut(s)	390, 640, 1167, 1376, 1899, 2468, 2891
SdaI	CCTGCAGG	2 cut(s)	2800, 2878
SduI	GDGCHC	3 cut(s)	554, 560, 1911
SfcI	CTRYAG	9 cut(s)	1527, 1545, 1608, 1727, 2016, 2062, 2244, 2796, 2874
SfuI	TTCGAA	2 cut(s)	2087, 2200
SinI	GGWCC	3 cut(s)	942, 1329, 1901
SmiMI	CAYNNNNRTG	2 cut(s)	471, 1026
SmlI	CTYRAG	2 cut(s)	2114, 2372
SmoI	CTYRAG	2 cut(s)	2114, 2372
Sse8387I	CCTGCAGG	2 cut(s)	2800, 2878
SsiI	CCGC	5 cut(s)	386, 481, 732, 905, 1688
SspMI	CTAG	7 cut(s)	686, 776, 873, 1410, 1419, 1653, 1662
SstI	GAGCTC	1 cut(s)	1911
StyD4I	CCNGG	7 cut(s)	388, 638, 1165, 1374, 1897, 2466, 2889
StyI	CCWWGG	4 cut(s)	42, 1059, 1617, 2075
TaiI	ACGT	2 cut(s)	931, 1327
TaqI	TCGA	8 cut(s)	195, 208, 298, 430, 1295, 1438, 2087, 2200
TaqII	GACCGA	1 cut(s)	1317
TatI	WGTACW	8 cut(s)	237, 269, 913, 1468, 1549, 1600, 1787, 2315
TfiI	GAWTC	7 cut(s)	796, 1499, 2000, 2249, 2261, 2345, 2437
Tru1I	TTAA	6 cut(s)	1025, 1314, 1772, 1808, 2115, 2505
Tru9I	TTAA	6 cut(s)	1025, 1314, 1772, 1808, 2115, 2505
TseFI	GTSAC	5 cut(s)	341, 634, 2445, 2572, 2639
Tsp45I	GTSAC	5 cut(s)	341, 634, 2445, 2572, 2639
TspGWI	ACGGA	6 cut(s)	26, 246, 278, 435, 491, 2842
Van91I	CCANNNNNTGG	4 cut(s)	467, 1589, 2615, 2770
Vha464I	CTTAAG	1 cut(s)	2114
VpaK11BI	GGWCC	3 cut(s)	942, 1329, 1901
XagI	CCTNNNNNAGG	1 cut(s)	2928
XapI	RAATTY	6 cut(s)	1943, 2523, 2701, 2779, 2803, 2857
XmnI	GAANNNNTTC	4 cut(s)	32, 133, 785, 2385
XspI	CTAG	7 cut(s)	686, 776, 873, 1410, 1419, 1653, 1662
Zsp2I	ATGCAT	1 cut(s)	1744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.