Methyl-CpG binding domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G63240 |
| fragaria_vesca | FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01911 FvH4_5g01911 |
| malus_domestica | MD06G1076800.v1.1 MD14G1098200.v1.1 |
| prunus_persica | Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 |
| pyrus_communis | pycom06g07430 pycom06g07440 pycom14g09640 |
| rosa_chinensis | RchiOBHm_Chr7g0198611 RchiOBHm_Chr7g0198661 |
| rosa_laevigata | RLG00000003850 RLG00000003857 |
| rosa_multiflora | Rmu_co8077932.1_g000001 Rmu_co8274787.1_g000001 Rmu_co8506873.1_g000001 Rmu_sc0000220.1_g000017 Rmu_sc0004229.1_g000004 |
| rosa_roxburghii | Rroxscaffold_3G00257550 Rroxscaffold_3G00257620 |
| rosa_rugosa | Rorug07G0048500 Rorug07G0049000 Rorug07G0049100 Rorug07G0049100 |
| rosa_samantha | Rh4BG123200 Rh7AG172000 Rh7AG172600 Rh7BG175400 Rh7BG176100 Rh7CG181500 Rh7CG182000 Rh7DG174500 Rh7DG174900 Rh7DG175200 |
| rosa_wichuraiana | Rw7G015090 Rw7G015150 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2902 |
| Acc36I | ACCTGC | 3 cut(s) | 2200, 2902, 3058 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 635, 1766, 2792 |
| AccBSI | CCGCTC | 1 cut(s) | 651 |
| AccII | CGCG | 1 cut(s) | 2583 |
| AclI | AACGTT | 1 cut(s) | 2805 |
| AclWI | GGATC | 7 cut(s) | 353, 605, 620, 1325, 1434, 2110, 2654 |
| AcoI | YGGCCR | 3 cut(s) | 6, 2346, 2938 |
| AcsI | RAATTY | 7 cut(s) | 600, 2120, 2700, 2878, 2956, 2980, 3034 |
| AcuI | CTGAAG | 3 cut(s) | 843, 1374, 1860 |
| AfaI | GTAC | 9 cut(s) | 184, 344, 376, 1083, 1557, 1728, 1779, 1966, 2494 |
| AflII | CTTAAG | 1 cut(s) | 2291 |
| AjiI | CACGTC | 1 cut(s) | 1493 |
| AjnI | CCWGG | 7 cut(s) | 556, 806, 1333, 1433, 1542, 2074, 2643 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2245, 2277 |
| AleI | CACNNNNGTG | 1 cut(s) | 500 |
| Alw21I | GWGCWC | 2 cut(s) | 17, 2088 |
| Alw26I | GTCTC | 3 cut(s) | 683, 990, 2860 |
| AlwI | GGATC | 7 cut(s) | 353, 605, 620, 1325, 1434, 2110, 2654 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 932, 1334 |
| Ama87I | CYCGRG | 1 cut(s) | 2857 |
| AoxI | GGCC | 9 cut(s) | 6, 850, 896, 1757, 2346, 2860, 2938, 3016, 3064 |
| ApoI | RAATTY | 7 cut(s) | 600, 2120, 2700, 2878, 2956, 2980, 3034 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 113, 214, 953, 2562 |
| AspLEI | GCGC | 2 cut(s) | 426, 2238 |
| AspS9I | GGNCC | 7 cut(s) | 897, 1110, 1497, 2078, 2860, 3016, 3064 |
| AsuHPI | GGTGA | 8 cut(s) | 179, 796, 1607, 1859, 2708, 2743, 2790, 2817 |
| AsuII | TTCGAA | 3 cut(s) | 604, 2264, 2377 |
| AvaI | CYCGRG | 1 cut(s) | 2857 |
| AvaII | GGWCC | 3 cut(s) | 1110, 1497, 2078 |
| AxyI | CCTNAGG | 1 cut(s) | 2568 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1782, 1815 |
| BalI | TGGCCA | 2 cut(s) | 8, 2348 |
| BanII | GRGCYC | 3 cut(s) | 17, 61, 2088 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1548, 1580 |
| BauI | CACGAG | 1 cut(s) | 10 |
| BbsI | GAAGAC | 3 cut(s) | 494, 637, 2366 |
| Bbv12I | GWGCWC | 2 cut(s) | 17, 2088 |
| BbvCI | CCTCAGC | 2 cut(s) | 177, 1170 |
| BccI | CCATC | 8 cut(s) | 281, 1005, 1045, 1310, 1411, 1592, 1760, 1937 |
| BceAI | ACGGC | 2 cut(s) | 485, 2333 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1443, 1477 |
| BciT130I | CCWGG | 7 cut(s) | 558, 808, 1335, 1435, 1544, 2076, 2645 |
| BciVI | GTATCC | 1 cut(s) | 2641 |
| BcoDI | GTCTC | 3 cut(s) | 683, 990, 2860 |
| BfaI | CTAG | 7 cut(s) | 854, 944, 1041, 1578, 1587, 1830, 1839 |
| BfmI | CTRYAG | 9 cut(s) | 1722, 1785, 1904, 2193, 2239, 2398, 2421, 2973, 3051 |
| BfoI | RGCGCY | 1 cut(s) | 2239 |
| BfrI | CTTAAG | 1 cut(s) | 2291 |
| BfuAI | ACCTGC | 3 cut(s) | 2200, 2902, 3058 |
| BfuI | GTATCC | 1 cut(s) | 2641 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1619 |
| BglII | AGATCT | 1 cut(s) | 2270 |
| Bme1390I | CCNGG | 7 cut(s) | 558, 808, 1335, 1435, 1544, 2076, 2645 |
| Bme18I | GGWCC | 3 cut(s) | 1110, 1497, 2078 |
| BmeT110I | CYCGRG | 1 cut(s) | 2857 |
| BmgBI | CACGTC | 1 cut(s) | 1493 |
| BmgT120I | GGNCC | 7 cut(s) | 897, 1110, 1497, 2078, 2860, 3016, 3064 |
| BmiI | GGNNCC | 4 cut(s) | 28, 924, 1161, 2049 |
| BmrFI | CCNGG | 7 cut(s) | 558, 808, 1335, 1435, 1544, 2076, 2645 |
| BmrI | ACTGGG | 2 cut(s) | 114, 2241 |
| BmuI | ACTGGG | 2 cut(s) | 114, 2241 |
| BpiI | GAAGAC | 3 cut(s) | 494, 637, 2366 |
| BpmI | CTGGAG | 3 cut(s) | 61, 705, 909 |
| Bpu10I | CCTNAGC | 4 cut(s) | 177, 1170, 2337, 3106 |
| Bpu14I | TTCGAA | 3 cut(s) | 604, 2264, 2377 |
| BpuEI | CTTGAG | 1 cut(s) | 2534 |
| BsaAI | YACGTR | 1 cut(s) | 914 |
| BsaBI | GATNNNNATC | 2 cut(s) | 267, 1015 |
| BsaI | GGTCTC | 1 cut(s) | 683 |
| BsaJI | CCNNGG | 6 cut(s) | 123, 163, 557, 1227, 1794, 2252 |
| BsaWI | WCCGGW | 1 cut(s) | 1927 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 332, 362 |
| Bse118I | RCCGGY | 3 cut(s) | 35, 1613, 2141 |
| Bse21I | CCTNAGG | 1 cut(s) | 2568 |
| Bse3DI | GCAATG | 2 cut(s) | 2391, 2929 |
| Bse8I | GATNNNNATC | 2 cut(s) | 267, 1015 |
| BseBI | CCWGG | 7 cut(s) | 558, 808, 1335, 1435, 1544, 2076, 2645 |
| BseDI | CCNNGG | 6 cut(s) | 123, 163, 557, 1227, 1794, 2252 |
| BseGI | GGATG | 5 cut(s) | 1422, 1672, 1921, 2068, 2719 |
| BseJI | GATNNNNATC | 2 cut(s) | 267, 1015 |
| BseMI | GCAATG | 2 cut(s) | 2391, 2929 |
| BseRI | GAGGAG | 1 cut(s) | 2585 |
| BseYI | CCCAGC | 3 cut(s) | 1514, 2324, 2459 |
| BsgI | GTGCAG | 3 cut(s) | 524, 1920, 2415 |
| Bsh1236I | CGCG | 1 cut(s) | 2583 |
| BshFI | GGCC | 9 cut(s) | 8, 852, 898, 1759, 2348, 2862, 2940, 3018, 3066 |
| BsiHKAI | GWGCWC | 2 cut(s) | 17, 2088 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2857 |
| BsiSI | CCGG | 5 cut(s) | 36, 1614, 1928, 2142, 2898 |
| BslFI | GGGAC | 1 cut(s) | 1163 |
| BsmAI | GTCTC | 3 cut(s) | 683, 990, 2860 |
| BsmFI | GGGAC | 1 cut(s) | 1163 |
| BsmI | GAATGC | 1 cut(s) | 324 |
| BsnI | GGCC | 9 cut(s) | 8, 852, 898, 1759, 2348, 2862, 2940, 3018, 3066 |
| Bso31I | GGTCTC | 1 cut(s) | 683 |
| BsoBI | CYCGRG | 1 cut(s) | 2857 |
| Bsp119I | TTCGAA | 3 cut(s) | 604, 2264, 2377 |
| Bsp1286I | GDGCHC | 3 cut(s) | 17, 61, 2088 |
| Bsp1407I | TGTACA | 3 cut(s) | 374, 1555, 1964 |
| BspANI | GGCC | 9 cut(s) | 8, 852, 898, 1759, 2348, 2862, 2940, 3018, 3066 |
| BspFNI | CGCG | 1 cut(s) | 2583 |
| BspHI | TCATGA | 2 cut(s) | 2482, 2515 |
| BspLI | GGNNCC | 4 cut(s) | 28, 924, 1161, 2049 |
| BspMAI | CTGCAG | 5 cut(s) | 1908, 2197, 2243, 2977, 3055 |
| BspMI | ACCTGC | 3 cut(s) | 2200, 2902, 3058 |
| BspPI | GGATC | 7 cut(s) | 353, 605, 620, 1325, 1434, 2110, 2654 |
| BspQI | GCTCTTC | 1 cut(s) | 1569 |
| BspT104I | TTCGAA | 3 cut(s) | 604, 2264, 2377 |
| BspTI | CTTAAG | 1 cut(s) | 2291 |
| BspTNI | GGTCTC | 1 cut(s) | 683 |
| BsrBI | CCGCTC | 1 cut(s) | 651 |
| BsrDI | GCAATG | 2 cut(s) | 2391, 2929 |
| BsrFI | RCCGGY | 3 cut(s) | 35, 1613, 2141 |
| BsrGI | TGTACA | 3 cut(s) | 374, 1555, 1964 |
| BssAI | RCCGGY | 3 cut(s) | 35, 1613, 2141 |
| BssECI | CCNNGG | 6 cut(s) | 123, 163, 557, 1227, 1794, 2252 |
| BssSI | CACGAG | 1 cut(s) | 10 |
| BssT1I | CCWWGG | 4 cut(s) | 123, 1227, 1794, 2252 |
| Bst2BI | CACGAG | 1 cut(s) | 10 |
| Bst2UI | CCWGG | 7 cut(s) | 558, 808, 1335, 1435, 1544, 2076, 2645 |
| Bst6I | CTCTTC | 3 cut(s) | 601, 1569, 1821 |
| BstAFI | CTTAAG | 1 cut(s) | 2291 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 432 |
| BstAUI | TGTACA | 3 cut(s) | 374, 1555, 1964 |
| BstBAI | YACGTR | 1 cut(s) | 914 |
| BstBI | TTCGAA | 3 cut(s) | 604, 2264, 2377 |
| BstC8I | GCNNGC | 8 cut(s) | 37, 249, 1077, 2322, 2346, 2912, 2973, 3068 |
| BstDSI | CCRYGG | 1 cut(s) | 163 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3105 |
| BstF5I | GGATG | 5 cut(s) | 1422, 1672, 1921, 2068, 2719 |
| BstFNI | CGCG | 1 cut(s) | 2583 |
| BstH2I | RGCGCY | 1 cut(s) | 2239 |
| BstHHI | GCGC | 2 cut(s) | 426, 2238 |
| BstMAI | GTCTC | 3 cut(s) | 683, 990, 2860 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 432, 1166, 1486, 1619, 1871, 2326, 2417, 3111 |
| BstNI | CCWGG | 7 cut(s) | 558, 808, 1335, 1435, 1544, 2076, 2645 |
| BstSCI | CCNGG | 7 cut(s) | 556, 806, 1333, 1433, 1542, 2074, 2643 |
| BstSFI | CTRYAG | 9 cut(s) | 1722, 1785, 1904, 2193, 2239, 2398, 2421, 2973, 3051 |
| BstUI | CGCG | 1 cut(s) | 2583 |
| BstV2I | GAAGAC | 3 cut(s) | 494, 637, 2366 |
| BstX2I | RGATCY | 4 cut(s) | 610, 1330, 1439, 2270 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 291 |
| BstYI | RGATCY | 4 cut(s) | 610, 1330, 1439, 2270 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2568 |
| BsuI | GTATCC | 1 cut(s) | 2641 |
| BsuRI | GGCC | 9 cut(s) | 8, 852, 898, 1759, 2348, 2862, 2940, 3018, 3066 |
| BtgI | CCRYGG | 1 cut(s) | 163 |
| BtrI | CACGTC | 1 cut(s) | 1493 |
| BtsCI | GGATG | 5 cut(s) | 1422, 1672, 1921, 2068, 2719 |
| BtsI | GCAGTG | 3 cut(s) | 495, 2780, 3007 |
| BveI | ACCTGC | 3 cut(s) | 2200, 2902, 3058 |
| Cac8I | GCNNGC | 8 cut(s) | 37, 249, 1077, 2322, 2346, 2912, 2973, 3068 |
| CaiI | CAGNNNCTG | 2 cut(s) | 932, 1334 |
| CciI | TCATGA | 2 cut(s) | 2482, 2515 |
| CfoI | GCGC | 2 cut(s) | 426, 2238 |
| Cfr10I | RCCGGY | 3 cut(s) | 35, 1613, 2141 |
| Cfr13I | GGNCC | 7 cut(s) | 897, 1110, 1497, 2078, 2860, 3016, 3064 |
| CseI | GACGC | 1 cut(s) | 34 |
| Csp6I | GTAC | 9 cut(s) | 183, 343, 375, 1082, 1556, 1727, 1778, 1965, 2493 |
| CviQI | GTAC | 9 cut(s) | 183, 343, 375, 1082, 1556, 1727, 1778, 1965, 2493 |
| EaeI | YGGCCR | 3 cut(s) | 6, 2346, 2938 |
| Eam1104I | CTCTTC | 3 cut(s) | 601, 1569, 1821 |
| EarI | CTCTTC | 3 cut(s) | 601, 1569, 1821 |
| Ecl136II | GAGCTC | 2 cut(s) | 15, 2086 |
| Eco130I | CCWWGG | 4 cut(s) | 123, 1227, 1794, 2252 |
| Eco24I | GRGCYC | 3 cut(s) | 17, 61, 2088 |
| Eco31I | GGTCTC | 1 cut(s) | 683 |
| Eco47I | GGWCC | 3 cut(s) | 1110, 1497, 2078 |
| Eco53kI | GAGCTC | 2 cut(s) | 15, 2086 |
| Eco57I | CTGAAG | 3 cut(s) | 843, 1374, 1860 |
| Eco81I | CCTNAGG | 1 cut(s) | 2568 |
| Eco88I | CYCGRG | 1 cut(s) | 2857 |
| EcoICRI | GAGCTC | 2 cut(s) | 15, 2086 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3105 |
| EcoRI | GAATTC | 4 cut(s) | 600, 2878, 2956, 3034 |
| EcoRII | CCWGG | 7 cut(s) | 556, 806, 1333, 1433, 1542, 2074, 2643 |
| EcoT14I | CCWWGG | 4 cut(s) | 123, 1227, 1794, 2252 |
| EcoT22I | ATGCAT | 2 cut(s) | 1672, 1921 |
| EcoT38I | GRGCYC | 3 cut(s) | 17, 61, 2088 |
| ErhI | CCWWGG | 4 cut(s) | 123, 1227, 1794, 2252 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2007, 2039 |
| FaqI | GGGAC | 1 cut(s) | 1163 |
| FauI | CCCGC | 3 cut(s) | 40, 1858, 2588 |
| FauNDI | CATATG | 1 cut(s) | 1407 |
| FokI | GGATG | 5 cut(s) | 1429, 1679, 1928, 2075, 2726 |
| FriOI | GRGCYC | 3 cut(s) | 17, 61, 2088 |
| FspBI | CTAG | 7 cut(s) | 854, 944, 1041, 1578, 1587, 1830, 1839 |
| GlaI | GCGC | 2 cut(s) | 425, 2237 |
| GsaI | CCCAGC | 3 cut(s) | 1518, 2328, 2463 |
| GsuI | CTGGAG | 3 cut(s) | 61, 705, 909 |
| HaeII | RGCGCY | 1 cut(s) | 2239 |
| HaeIII | GGCC | 9 cut(s) | 8, 852, 898, 1759, 2348, 2862, 2940, 3018, 3066 |
| HapII | CCGG | 5 cut(s) | 36, 1614, 1928, 2142, 2898 |
| HgaI | GACGC | 1 cut(s) | 34 |
| HhaI | GCGC | 2 cut(s) | 426, 2238 |
| Hin6I | GCGC | 2 cut(s) | 424, 2236 |
| HinP1I | GCGC | 2 cut(s) | 424, 2236 |
| HincII | GTYRAC | 3 cut(s) | 366, 744, 1950 |
| HindII | GTYRAC | 3 cut(s) | 366, 744, 1950 |
| HindIII | AAGCTT | 1 cut(s) | 1478 |
| HinfI | GANTC | 8 cut(s) | 964, 1372, 1979, 2177, 2426, 2438, 2522, 2614 |
| HpaI | GTTAAC | 1 cut(s) | 1950 |
| HpaII | CCGG | 5 cut(s) | 36, 1614, 1928, 2142, 2898 |
| HphI | GGTGA | 8 cut(s) | 179, 796, 1607, 1859, 2708, 2743, 2790, 2817 |
| Hpy166II | GTNNAC | 8 cut(s) | 366, 460, 698, 744, 1950, 1960, 2493, 2952 |
| Hpy8I | GTNNAC | 8 cut(s) | 366, 460, 698, 744, 1950, 1960, 2493, 2952 |
| Hpy99I | CGWCG | 1 cut(s) | 1497 |
| HpyAV | CCTTC | 6 cut(s) | 330, 1046, 1465, 2137, 2517, 2593 |
| HpyCH4IV | ACGT | 8 cut(s) | 913, 1096, 1492, 1821, 1956, 2000, 2805, 3060 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 432, 1166, 1486, 1619, 1871, 2326, 2417, 3111 |
| HpySE526I | ACGT | 8 cut(s) | 913, 1096, 1492, 1821, 1956, 2000, 2805, 3060 |
| HspAI | GCGC | 2 cut(s) | 424, 2236 |
| KroI | GCCGGC | 1 cut(s) | 35 |
| KroNI | GCCGGC | 1 cut(s) | 37 |
| KspAI | GTTAAC | 1 cut(s) | 1950 |
| LguI | GCTCTTC | 1 cut(s) | 1569 |
| LmnI | GCTCC | 7 cut(s) | 20, 32, 42, 656, 928, 1165, 1895 |
| MaeI | CTAG | 7 cut(s) | 854, 944, 1041, 1578, 1587, 1830, 1839 |
| MaeII | ACGT | 8 cut(s) | 913, 1096, 1492, 1821, 1956, 2000, 2805, 3060 |
| MbiI | CCGCTC | 1 cut(s) | 651 |
| MfeI | CAATTG | 1 cut(s) | 2864 |
| MflI | RGATCY | 4 cut(s) | 610, 1330, 1439, 2270 |
| MhlI | GDGCHC | 3 cut(s) | 17, 61, 2088 |
| MlsI | TGGCCA | 2 cut(s) | 8, 2348 |
| MluNI | TGGCCA | 2 cut(s) | 8, 2348 |
| MlyI | GAGTC | 2 cut(s) | 1366, 1988 |
| MmeI | TCCRAC | 7 cut(s) | 272, 313, 1187, 1288, 1302, 1394, 2568 |
| Mox20I | TGGCCA | 2 cut(s) | 8, 2348 |
| Mph1103I | ATGCAT | 2 cut(s) | 1672, 1921 |
| MroNI | GCCGGC | 1 cut(s) | 35 |
| MroXI | GAANNNNTTC | 4 cut(s) | 113, 214, 953, 2562 |
| MscI | TGGCCA | 2 cut(s) | 8, 2348 |
| MseI | TTAA | 7 cut(s) | 1193, 1482, 1949, 1985, 2025, 2292, 2682 |
| MslI | CAYNNNNRTG | 3 cut(s) | 500, 639, 1194 |
| Msp20I | TGGCCA | 2 cut(s) | 8, 2348 |
| MspA1I | CMGCKG | 4 cut(s) | 247, 1169, 2198, 2606 |
| MspCI | CTTAAG | 1 cut(s) | 2291 |
| MspI | CCGG | 5 cut(s) | 36, 1614, 1928, 2142, 2898 |
| MspR9I | CCNGG | 7 cut(s) | 558, 808, 1335, 1435, 1544, 2076, 2645 |
| MunI | CAATTG | 1 cut(s) | 2864 |
| Mva1269I | GAATGC | 1 cut(s) | 324 |
| MvaI | CCWGG | 7 cut(s) | 558, 808, 1335, 1435, 1544, 2076, 2645 |
| MvnI | CGCG | 1 cut(s) | 2583 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 432, 1166, 1486, 1619, 1871, 2326, 2417, 3111 |
| NaeI | GCCGGC | 1 cut(s) | 37 |
| NdeI | CATATG | 1 cut(s) | 1407 |
| NgoMIV | GCCGGC | 1 cut(s) | 35 |
| NlaIV | GGNNCC | 4 cut(s) | 28, 924, 1161, 2049 |
| NmuCI | GTSAC | 6 cut(s) | 446, 493, 802, 2622, 2749, 2816 |
| NsiI | ATGCAT | 2 cut(s) | 1672, 1921 |
| NspV | TTCGAA | 3 cut(s) | 604, 2264, 2377 |
| OliI | CACNNNNGTG | 1 cut(s) | 500 |
| PagI | TCATGA | 2 cut(s) | 2482, 2515 |
| PaqCI | CACCTGC | 1 cut(s) | 2902 |
| PciSI | GCTCTTC | 1 cut(s) | 1569 |
| PctI | GAATGC | 1 cut(s) | 324 |
| PdiI | GCCGGC | 1 cut(s) | 37 |
| PdmI | GAANNNNTTC | 4 cut(s) | 113, 214, 953, 2562 |
| PfeI | GAWTC | 6 cut(s) | 964, 2177, 2426, 2438, 2522, 2614 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 635, 1766, 2792 |
| PfoI | TCCNGGA | 1 cut(s) | 2643 |
| PleI | GAGTC | 2 cut(s) | 1366, 1987 |
| PpsI | GAGTC | 2 cut(s) | 1366, 1987 |
| Ppu21I | YACGTR | 1 cut(s) | 914 |
| Psp124BI | GAGCTC | 2 cut(s) | 17, 2088 |
| Psp1406I | AACGTT | 1 cut(s) | 2805 |
| Psp6I | CCWGG | 7 cut(s) | 556, 806, 1333, 1433, 1542, 2074, 2643 |
| PspFI | CCCAGC | 3 cut(s) | 1514, 2324, 2459 |
| PspGI | CCWGG | 7 cut(s) | 556, 806, 1333, 1433, 1542, 2074, 2643 |
| PspN4I | GGNNCC | 4 cut(s) | 28, 924, 1161, 2049 |
| PspPI | GGNCC | 7 cut(s) | 897, 1110, 1497, 2078, 2860, 3016, 3064 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2280, 2312 |
| PstI | CTGCAG | 5 cut(s) | 1908, 2197, 2243, 2977, 3055 |
| PstNI | CAGNNNCTG | 2 cut(s) | 932, 1334 |
| PsuI | RGATCY | 4 cut(s) | 610, 1330, 1439, 2270 |
| PvuII | CAGCTG | 4 cut(s) | 247, 1169, 2198, 2606 |
| RsaI | GTAC | 9 cut(s) | 184, 344, 376, 1083, 1557, 1728, 1779, 1966, 2494 |
| RsaNI | GTAC | 9 cut(s) | 183, 343, 375, 1082, 1556, 1727, 1778, 1965, 2493 |
| RseI | CAYNNNNRTG | 3 cut(s) | 500, 639, 1194 |
| SacI | GAGCTC | 2 cut(s) | 17, 2088 |
| SapI | GCTCTTC | 1 cut(s) | 1569 |
| SaqAI | TTAA | 7 cut(s) | 1193, 1482, 1949, 1985, 2025, 2292, 2682 |
| Sau96I | GGNCC | 7 cut(s) | 897, 1110, 1497, 2078, 2860, 3016, 3064 |
| SbfI | CCTGCAGG | 2 cut(s) | 2977, 3055 |
| SchI | GAGTC | 2 cut(s) | 1366, 1988 |
| ScrFI | CCNGG | 7 cut(s) | 558, 808, 1335, 1435, 1544, 2076, 2645 |
| SdaI | CCTGCAGG | 2 cut(s) | 2977, 3055 |
| SduI | GDGCHC | 3 cut(s) | 17, 61, 2088 |
| SfcI | CTRYAG | 9 cut(s) | 1722, 1785, 1904, 2193, 2239, 2398, 2421, 2973, 3051 |
| SfuI | TTCGAA | 3 cut(s) | 604, 2264, 2377 |
| SinI | GGWCC | 3 cut(s) | 1110, 1497, 2078 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 500, 639, 1194 |
| SmlI | CTYRAG | 2 cut(s) | 2291, 2549 |
| SmoI | CTYRAG | 2 cut(s) | 2291, 2549 |
| Sse8387I | CCTGCAGG | 2 cut(s) | 2977, 3055 |
| SspMI | CTAG | 7 cut(s) | 854, 944, 1041, 1578, 1587, 1830, 1839 |
| SstI | GAGCTC | 2 cut(s) | 17, 2088 |
| StyD4I | CCNGG | 7 cut(s) | 556, 806, 1333, 1433, 1542, 2074, 2643 |
| StyI | CCWWGG | 4 cut(s) | 123, 1227, 1794, 2252 |
| TaiI | ACGT | 8 cut(s) | 916, 1099, 1495, 1824, 1959, 2003, 2808, 3063 |
| TaqII | GACCGA | 1 cut(s) | 1485 |
| TatI | WGTACW | 8 cut(s) | 342, 374, 1081, 1555, 1726, 1777, 1964, 2492 |
| TauI | GCSGC | 1 cut(s) | 814 |
| TfiI | GAWTC | 6 cut(s) | 964, 2177, 2426, 2438, 2522, 2614 |
| Tru1I | TTAA | 7 cut(s) | 1193, 1482, 1949, 1985, 2025, 2292, 2682 |
| Tru9I | TTAA | 7 cut(s) | 1193, 1482, 1949, 1985, 2025, 2292, 2682 |
| TseFI | GTSAC | 6 cut(s) | 446, 493, 802, 2622, 2749, 2816 |
| Tsp45I | GTSAC | 6 cut(s) | 446, 493, 802, 2622, 2749, 2816 |
| TspGWI | ACGGA | 4 cut(s) | 351, 383, 603, 3019 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 635, 1766, 2792 |
| Vha464I | CTTAAG | 1 cut(s) | 2291 |
| VpaK11BI | GGWCC | 3 cut(s) | 1110, 1497, 2078 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3105 |
| XapI | RAATTY | 7 cut(s) | 600, 2120, 2700, 2878, 2956, 2980, 3034 |
| XmnI | GAANNNNTTC | 4 cut(s) | 113, 214, 953, 2562 |
| XspI | CTAG | 7 cut(s) | 854, 944, 1041, 1578, 1587, 1830, 1839 |
| Zsp2I | ATGCAT | 2 cut(s) | 1672, 1921 |