Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8274787.1

Orthogroup ID

OG0002094

Physical Location & Seq

Genomic Coordinates Forward (+)

40 .. 835

Gene Structure 796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8274787.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 796 bp

atgttgcttgacgaccaagtggttcctaaagagcaacatcataagttggatactgaggaaatggatcctgagaaactcagctttctgcttcgagaagactcatcctttgagtttgctgtcaaagtcctcacaggggaattgccaatagattacgaacctattttgaaacctgcagctgatatggtgccaaaggcaactgggagctgcagcagaaatgcaactgccaagtcctgtagcagtaaagccatccaagctgtagattcggcacatgaagcatctcagcagtttgaggctatccaagagaagaaggtagcagatgatccttgtactataacaaactcttcacttcatgaggaatcttcgaacgagattgagaaatctcatgggaaccaagctgttgatgtggagcaactccagatgtctgaaactgagaaggctgctgtcgagaatccacagttggacttctcatcccttttcccggatacttggtccgattctgacccattctttgatcttgcatatcagagtcttagagaggatgatctgtttcaggcttactttcaggaaaattacaaccagatagatggctcggcactgccagagtttggctcacctagcattttccagaatgacatgtttgatccaccagaagaatatgtcccaggacacctgctgcccatgaattcttctttgccacctgcggaaaatgtgagccagccattatccatgaattcttcatcccagcctgcaggaattgagggcttttcaaatggcaatggggttggttcagaccaac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

265

Amino Acids

29.17

Weight (kDa)

4.16

Isoelectric Point (pI)

53.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63240
fragaria_vesca	FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01911 FvH4_5g01911
malus_domestica	MD06G1076800.v1.1 MD14G1098200.v1.1
prunus_persica	Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1
pyrus_communis	pycom06g07430 pycom06g07440 pycom14g09640
rosa_chinensis	RchiOBHm_Chr7g0198611 RchiOBHm_Chr7g0198661
rosa_laevigata	RLG00000003850 RLG00000003857
rosa_multiflora	Rmu_co8077932.1_g000001 Rmu_co8274787.1_g000001 Rmu_co8506873.1_g000001 Rmu_sc0000220.1_g000017 Rmu_sc0004229.1_g000004
rosa_roxburghii	Rroxscaffold_3G00257550 Rroxscaffold_3G00257620
rosa_rugosa	Rorug07G0048500 Rorug07G0049000 Rorug07G0049100 Rorug07G0049100
rosa_samantha	Rh4BG123200 Rh7AG172000 Rh7AG172600 Rh7BG175400 Rh7BG176100 Rh7CG181500 Rh7CG182000 Rh7DG174500 Rh7DG174900 Rh7DG175200
rosa_wichuraiana	Rw7G015090 Rw7G015150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	678, 706
Acc36I	ACCTGC	3 cut(s)	178, 678, 706
AccB1I	GGYRCC	1 cut(s)	184
AccB7I	CCANNNNNTGG	1 cut(s)	605
AciI	CCGC	1 cut(s)	701
AclWI	GGATC	4 cut(s)	59, 72, 314, 635
AcsI	RAATTY	2 cut(s)	682, 730
AfaI	GTAC	1 cut(s)	328
AfiI	CCNNNNNNNGG	3 cut(s)	133, 478, 605
AflIII	ACRYGT	1 cut(s)	633
AgsI	TTSAA	2 cut(s)	166, 768
AjnI	CCWGG	1 cut(s)	661
AjuI	GAANNNNNNNTTGG	2 cut(s)	440, 472
AluBI	AGCT	5 cut(s)	81, 176, 204, 254, 395
AluI	AGCT	5 cut(s)	81, 176, 204, 254, 395
AlwI	GGATC	4 cut(s)	59, 72, 314, 635
ApeKI	GCWGC	5 cut(s)	173, 204, 207, 437, 673
ApoI	RAATTY	2 cut(s)	682, 730
ArsI	GACNNNNNNTTYG	4 cut(s)	89, 121, 491, 523
AspS9I	GGNCC	1 cut(s)	489
AsuC2I	CCSGG	1 cut(s)	479
AsuHPI	GGTGA	1 cut(s)	603
AsuII	TTCGAA	1 cut(s)	362
AvaII	GGWCC	1 cut(s)	489
BamHI	GGATCC	1 cut(s)	64
BanI	GGYRCC	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	102
BbvI	GCAGC	5 cut(s)	185, 191, 219, 424, 660
BccI	CCATC	2 cut(s)	254, 578
BciT130I	CCWGG	1 cut(s)	663
BciVI	GTATCC	2 cut(s)	43, 475
BcnI	CCSGG	1 cut(s)	479
BfaI	CTAG	1 cut(s)	615
BfmI	CTRYAG	5 cut(s)	171, 205, 232, 255, 747
BfuAI	ACCTGC	3 cut(s)	178, 678, 706
BfuI	GTATCC	2 cut(s)	43, 475
BisI	GCNGC	5 cut(s)	174, 205, 208, 438, 674
BlsI	GCNGC	5 cut(s)	175, 206, 209, 439, 675
Bme1390I	CCNGG	2 cut(s)	479, 663
Bme18I	GGWCC	1 cut(s)	489
BmgT120I	GGNCC	1 cut(s)	489
BmiI	GGNNCC	4 cut(s)	24, 66, 186, 389
BmrFI	CCNGG	2 cut(s)	479, 663
BmrI	ACTGGG	1 cut(s)	207
BmsI	GCATC	1 cut(s)	284
BmuI	ACTGGG	1 cut(s)	207
BpiI	GAAGAC	1 cut(s)	102
BplI	GAGNNNNNCTC	2 cut(s)	593, 625
BpmI	CTGGAG	1 cut(s)	398
Bpu14I	TTCGAA	1 cut(s)	362
BpuMI	CCSGG	1 cut(s)	479
BsaJI	CCNNGG	1 cut(s)	661
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 478, 605
Bse1I	ACTGG	1 cut(s)	202
Bse3DI	GCAATG	1 cut(s)	781
BseBI	CCWGG	1 cut(s)	663
BseDI	CCNNGG	1 cut(s)	661
BseGI	GGATG	5 cut(s)	101, 246, 467, 544, 737
BseLI	CCNNNNNNNGG	3 cut(s)	133, 478, 605
BseMI	GCAATG	1 cut(s)	781
BseMII	CTCAG	5 cut(s)	45, 60, 91, 293, 420
BseNI	ACTGG	1 cut(s)	202
BseXI	GCAGC	5 cut(s)	185, 191, 219, 424, 660
BseYI	CCCAGC	1 cut(s)	741
BshNI	GGYRCC	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	479
BslFI	GGGAC	1 cut(s)	644
BslI	CCNNNNNNNGG	3 cut(s)	133, 478, 605
BsmFI	GGGAC	1 cut(s)	644
Bsp119I	TTCGAA	1 cut(s)	362
Bsp143I	GATC	5 cut(s)	64, 319, 511, 541, 640
BspACI	CCGC	1 cut(s)	701
BspCNI	CTCAG	5 cut(s)	46, 61, 90, 292, 421
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	4 cut(s)	24, 66, 186, 389
BspMAI	CTGCAG	3 cut(s)	175, 209, 751
BspMI	ACCTGC	3 cut(s)	178, 678, 706
BspPI	GGATC	4 cut(s)	59, 72, 314, 635
BspT104I	TTCGAA	1 cut(s)	362
BspT107I	GGYRCC	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	781
BsrI	ACTGG	1 cut(s)	202
BssECI	CCNNGG	1 cut(s)	661
BssMI	GATC	5 cut(s)	64, 319, 511, 541, 640
Bst2UI	CCWGG	1 cut(s)	663
Bst4CI	ACNGT	1 cut(s)	456
Bst6I	CTCTTC	1 cut(s)	346
BstBI	TTCGAA	1 cut(s)	362
BstC8I	GCNNGC	2 cut(s)	716, 747
BstDEI	CTNAG	6 cut(s)	54, 69, 77, 279, 429, 530
BstF5I	GGATG	5 cut(s)	101, 246, 467, 544, 737
BstKTI	GATC	5 cut(s)	67, 322, 514, 544, 643
BstMBI	GATC	5 cut(s)	64, 319, 511, 541, 640
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 272, 615
BstNI	CCWGG	1 cut(s)	663
BstNSI	RCATGY	1 cut(s)	637
BstSCI	CCNGG	2 cut(s)	477, 661
BstSFI	CTRYAG	5 cut(s)	171, 205, 232, 255, 747
BstV1I	GCAGC	5 cut(s)	185, 191, 219, 424, 660
BstV2I	GAAGAC	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	64
BstXI	CCANNNNNNTGG	1 cut(s)	584
BstYI	RGATCY	1 cut(s)	64
BsuI	GTATCC	2 cut(s)	43, 475
BtsCI	GGATG	5 cut(s)	101, 246, 467, 544, 737
BtsI	GCAGTG	1 cut(s)	593
BtsIMutI	CAGTG	1 cut(s)	593
BveI	ACCTGC	3 cut(s)	178, 678, 706
Cac8I	GCNNGC	2 cut(s)	716, 747
CciI	TCATGA	1 cut(s)	349
Cfr13I	GGNCC	1 cut(s)	489
Csp6I	GTAC	1 cut(s)	327
CviAII	CATG	6 cut(s)	269, 350, 383, 634, 679, 727
CviQI	GTAC	1 cut(s)	327
DdeI	CTNAG	6 cut(s)	54, 69, 77, 279, 429, 530
DpnI	GATC	5 cut(s)	66, 321, 513, 543, 642
DpnII	GATC	5 cut(s)	64, 319, 511, 541, 640
Eam1104I	CTCTTC	1 cut(s)	346
EarI	CTCTTC	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	489
EcoRI	GAATTC	2 cut(s)	682, 730
EcoRII	CCWGG	1 cut(s)	661
FaeI	CATG	6 cut(s)	272, 353, 386, 637, 682, 730
FaqI	GGGAC	1 cut(s)	644
FatI	CATG	6 cut(s)	268, 349, 382, 633, 678, 726
Fnu4HI	GCNGC	5 cut(s)	174, 205, 208, 438, 674
FokI	GGATG	5 cut(s)	88, 233, 454, 551, 724
Fsp4HI	GCNGC	5 cut(s)	174, 205, 208, 438, 674
FspBI	CTAG	1 cut(s)	615
GluI	GCNGC	5 cut(s)	174, 205, 208, 438, 674
GsaI	CCCAGC	1 cut(s)	745
GsuI	CTGGAG	1 cut(s)	398
HapII	CCGG	1 cut(s)	479
Hin1II	CATG	6 cut(s)	272, 353, 386, 637, 682, 730
HinfI	GANTC	6 cut(s)	98, 260, 356, 448, 494, 526
HpaII	CCGG	1 cut(s)	479
HphI	GGTGA	1 cut(s)	603
Hpy188I	TCNGA	5 cut(s)	424, 493, 499, 525, 790
Hpy188III	TCNNGA	7 cut(s)	68, 92, 350, 415, 445, 563, 625
HpyAV	CCTTC	2 cut(s)	301, 427
HpyCH4III	ACNGT	1 cut(s)	456
HpyCH4V	TGCA	5 cut(s)	173, 207, 218, 518, 749
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 272, 615
HpyF3I	CTNAG	6 cut(s)	54, 69, 77, 279, 429, 530
Hsp92II	CATG	6 cut(s)	272, 353, 386, 637, 682, 730
Kzo9I	GATC	5 cut(s)	64, 319, 511, 541, 640
LmnI	GCTCC	2 cut(s)	201, 406
Lsp1109I	GCAGC	5 cut(s)	185, 191, 219, 424, 660
LweI	GCATC	1 cut(s)	284
MaeI	CTAG	1 cut(s)	615
MalI	GATC	5 cut(s)	66, 321, 513, 543, 642
MboI	GATC	5 cut(s)	64, 319, 511, 541, 640
MboII	GAAGA	7 cut(s)	107, 316, 333, 351, 662, 678, 726
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	5 cut(s)	137, 568, 682, 730, 753
MlyI	GAGTC	2 cut(s)	92, 535
MmeI	TCCRAC	2 cut(s)	27, 438
MnlI	CCTC	6 cut(s)	49, 137, 283, 346, 529, 751
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	1 cut(s)	479
MspR9I	CCNGG	2 cut(s)	479, 663
MvaI	CCWGG	1 cut(s)	663
MwoI	GCNNNNNNNGC	3 cut(s)	251, 272, 615
NciI	CCSGG	1 cut(s)	479
NdeII	GATC	5 cut(s)	64, 319, 511, 541, 640
NlaIII	CATG	6 cut(s)	272, 353, 386, 637, 682, 730
NlaIV	GGNNCC	4 cut(s)	24, 66, 186, 389
NmeAIII	GCCGAG	1 cut(s)	569
NspI	RCATGY	1 cut(s)	637
NspV	TTCGAA	1 cut(s)	362
PagI	TCATGA	1 cut(s)	349
PaqCI	CACCTGC	2 cut(s)	678, 706
PciI	ACATGT	1 cut(s)	633
PfeI	GAWTC	4 cut(s)	260, 356, 448, 494
PflMI	CCANNNNNTGG	1 cut(s)	605
PfoI	TCCNGGA	1 cut(s)	477
PkrI	GCNGC	5 cut(s)	175, 206, 209, 439, 675
PleI	GAGTC	2 cut(s)	92, 534
PpsI	GAGTC	2 cut(s)	92, 534
PscI	ACATGT	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	661
PspFI	CCCAGC	1 cut(s)	741
PspGI	CCWGG	1 cut(s)	661
PspN4I	GGNNCC	4 cut(s)	24, 66, 186, 389
PspPI	GGNCC	1 cut(s)	489
PstI	CTGCAG	3 cut(s)	175, 209, 751
PsuI	RGATCY	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
SatI	GCNGC	5 cut(s)	174, 205, 208, 438, 674
Sau3AI	GATC	5 cut(s)	64, 319, 511, 541, 640
Sau96I	GGNCC	1 cut(s)	489
SbfI	CCTGCAGG	1 cut(s)	751
SchI	GAGTC	2 cut(s)	92, 535
ScrFI	CCNGG	2 cut(s)	479, 663
SdaI	CCTGCAGG	1 cut(s)	751
SfaNI	GCATC	1 cut(s)	284
SfcI	CTRYAG	5 cut(s)	171, 205, 232, 255, 747
SfuI	TTCGAA	1 cut(s)	362
SinI	GGWCC	1 cut(s)	489
Sse8387I	CCTGCAGG	1 cut(s)	751
Sse9I	AATT	5 cut(s)	137, 568, 682, 730, 753
SsiI	CCGC	1 cut(s)	701
SspMI	CTAG	1 cut(s)	615
StyD4I	CCNGG	2 cut(s)	477, 661
TaaI	ACNGT	1 cut(s)	456
TaqI	TCGA	3 cut(s)	91, 362, 444
TasI	AATT	5 cut(s)	137, 568, 682, 730, 753
TatI	WGTACW	1 cut(s)	326
TfiI	GAWTC	4 cut(s)	260, 356, 448, 494
TscAI	CASTG	1 cut(s)	600
TseI	GCWGC	5 cut(s)	173, 204, 207, 437, 673
TspDTI	ATGAA	5 cut(s)	285, 338, 695, 726, 743
TspRI	CASTG	1 cut(s)	600
Van91I	CCANNNNNTGG	1 cut(s)	605
VpaK11BI	GGWCC	1 cut(s)	489
XapI	RAATTY	2 cut(s)	682, 730
XceI	RCATGY	1 cut(s)	637
XspI	CTAG	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.