Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8506873.1

Orthogroup ID

OG0002094

Physical Location & Seq

Genomic Coordinates Forward (+)

382 .. 2432

Gene Structure 2051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8506873.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atggtggtcacgagctcccctgactggctccccgccggctggagcgtccaattcagagcgcagaacaggggtcgcagaactgcgatttacacggatttggaaactgggaaaaagttcttctccaaggacgatgttatacgctatactaaaaaagccaccaaccgtggtgaagagcctcagcgtacaaattccaaaaaaccctcagatagaagtcattcgcaactggcagcaaacacagatgaatatcctgaatggttgccagatggttggaaagtcgaattgagaactcgaaaaactggcattcaagttggaagggagtacaagtgttacattgatccgttgacggaatgtacattttattccaagccagaggtatttcgatacctgaaaactgtaaagcgcaagacctgcaaatccagaagtcacaaaatggtaaaccgcaagagatgtataatcaaaacgaagactgtcactgccgtgcagttgccaagcaaagtttgttccctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

169

Amino Acids

19.69

Weight (kDa)

9.99

Isoelectric Point (pI)

42.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63240
fragaria_vesca	FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01911 FvH4_5g01911
malus_domestica	MD06G1076800.v1.1 MD14G1098200.v1.1
prunus_persica	Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1
pyrus_communis	pycom06g07430 pycom06g07440 pycom14g09640
rosa_chinensis	RchiOBHm_Chr7g0198611 RchiOBHm_Chr7g0198661
rosa_laevigata	RLG00000003850 RLG00000003857
rosa_multiflora	Rmu_co8077932.1_g000001 Rmu_co8274787.1_g000001 Rmu_co8506873.1_g000001 Rmu_sc0000220.1_g000017 Rmu_sc0004229.1_g000004
rosa_roxburghii	Rroxscaffold_3G00257550 Rroxscaffold_3G00257620
rosa_rugosa	Rorug07G0048500 Rorug07G0049000 Rorug07G0049100 Rorug07G0049100
rosa_samantha	Rh4BG123200 Rh7AG172000 Rh7AG172600 Rh7BG175400 Rh7BG176100 Rh7CG181500 Rh7CG182000 Rh7DG174500 Rh7DG174900 Rh7DG175200
rosa_wichuraiana	Rw7G015090 Rw7G015150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	416
AciI	CCGC	2 cut(s)	33, 439
AclWI	GGATC	1 cut(s)	329
AcsI	RAATTY	1 cut(s)	187
AfaI	GTAC	3 cut(s)	184, 320, 352
AfiI	CCNNNNNNNGG	2 cut(s)	24, 39
AgsI	TTSAA	1 cut(s)	305
AleI	CACNNNNGTG	1 cut(s)	476
AluBI	AGCT	1 cut(s)	15
AluI	AGCT	1 cut(s)	15
Alw21I	GWGCWC	1 cut(s)	17
AlwI	GGATC	1 cut(s)	329
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	1 cut(s)	187
Asp700I	GAANNNNTTC	2 cut(s)	113, 214
AspLEI	GCGC	2 cut(s)	61, 402
AsuHPI	GGTGA	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	17
BauI	CACGAG	1 cut(s)	10
BbsI	GAAGAC	1 cut(s)	470
Bbv12I	GWGCWC	1 cut(s)	17
BbvCI	CCTCAGC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	239
BccI	CCATC	1 cut(s)	257
BceAI	ACGGC	1 cut(s)	461
BfuAI	ACCTGC	1 cut(s)	416
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
BmiI	GGNNCC	1 cut(s)	29
BmrI	ACTGGG	1 cut(s)	114
BmuI	ACTGGG	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	470
BpmI	CTGGAG	1 cut(s)	61
Bpu10I	CCTNAGC	1 cut(s)	177
BsaBI	GATNNNNATC	1 cut(s)	243
BsaJI	CCNNGG	2 cut(s)	123, 163
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 39
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	4 cut(s)	29, 109, 228, 301
Bse8I	GATNNNNATC	1 cut(s)	243
BseDI	CCNNGG	2 cut(s)	123, 163
BseJI	GATNNNNATC	1 cut(s)	243
BseLI	CCNNNNNNNGG	2 cut(s)	24, 39
BseMII	CTCAG	2 cut(s)	191, 216
BseNI	ACTGG	4 cut(s)	29, 109, 228, 301
BseXI	GCAGC	1 cut(s)	239
BsgI	GTGCAG	1 cut(s)	500
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	24, 39
BsmI	GAATGC	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp1407I	TGTACA	1 cut(s)	350
Bsp143I	GATC	1 cut(s)	334
BspACI	CCGC	2 cut(s)	33, 439
BspCNI	CTCAG	2 cut(s)	190, 215
BspLI	GGNNCC	1 cut(s)	29
BspMI	ACCTGC	1 cut(s)	416
BspPI	GGATC	1 cut(s)	329
BspQI	GCTCTTC	1 cut(s)	165
BsrFI	RCCGGY	1 cut(s)	35
BsrGI	TGTACA	1 cut(s)	350
BsrI	ACTGG	4 cut(s)	29, 109, 228, 301
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	2 cut(s)	123, 163
BssMI	GATC	1 cut(s)	334
BssSI	CACGAG	1 cut(s)	10
BssT1I	CCWWGG	1 cut(s)	123
Bst2BI	CACGAG	1 cut(s)	10
Bst4CI	ACNGT	3 cut(s)	164, 394, 469
Bst6I	CTCTTC	1 cut(s)	165
BstAPI	GCANNNNNTGC	1 cut(s)	408
BstAUI	TGTACA	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	2 cut(s)	177, 202
BstDSI	CCRYGG	1 cut(s)	163
BstHHI	GCGC	2 cut(s)	61, 402
BstKTI	GATC	1 cut(s)	337
BstMBI	GATC	1 cut(s)	334
BstMWI	GCNNNNNNNGC	1 cut(s)	408
BstV1I	GCAGC	1 cut(s)	239
BstV2I	GAAGAC	1 cut(s)	470
BstXI	CCANNNNNNTGG	1 cut(s)	267
BtgI	CCRYGG	1 cut(s)	163
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	1 cut(s)	471
BveI	ACCTGC	1 cut(s)	416
Cac8I	GCNNGC	1 cut(s)	37
CfoI	GCGC	2 cut(s)	61, 402
Cfr10I	RCCGGY	1 cut(s)	35
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	3 cut(s)	183, 319, 351
CviJI	RGCY	6 cut(s)	15, 28, 39, 155, 175, 367
CviKI_1	RGCY	6 cut(s)	15, 28, 39, 155, 175, 367
CviQI	GTAC	3 cut(s)	183, 319, 351
DdeI	CTNAG	2 cut(s)	177, 202
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Ecl136II	GAGCTC	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	17
Eco53kI	GAGCTC	1 cut(s)	15
EcoICRI	GAGCTC	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	17
ErhI	CCWWGG	1 cut(s)	123
FaiI	YATR	3 cut(s)	137, 144, 452
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	228
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	228
GlaI	GCGC	2 cut(s)	60, 401
GluI	GCNGC	1 cut(s)	228
GsuI	CTGGAG	1 cut(s)	61
HapII	CCGG	1 cut(s)	36
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	2 cut(s)	61, 402
Hin6I	GCGC	2 cut(s)	59, 400
HinP1I	GCGC	2 cut(s)	59, 400
HincII	GTYRAC	1 cut(s)	342
HindII	GTYRAC	1 cut(s)	342
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	2 cut(s)	342, 436
Hpy188I	TCNGA	2 cut(s)	56, 205
Hpy188III	TCNNGA	3 cut(s)	10, 248, 417
Hpy8I	GTNNAC	2 cut(s)	342, 436
HpyAV	CCTTC	1 cut(s)	306
HpyCH4III	ACNGT	3 cut(s)	164, 394, 469
HpyCH4V	TGCA	2 cut(s)	411, 481
HpyF10VI	GCNNNNNNNGC	1 cut(s)	408
HpyF3I	CTNAG	2 cut(s)	177, 202
HspAI	GCGC	2 cut(s)	59, 400
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	334
LguI	GCTCTTC	1 cut(s)	165
LmnI	GCTCC	3 cut(s)	20, 33, 42
Lsp1109I	GCAGC	1 cut(s)	239
MaeIII	GTNAC	4 cut(s)	7, 326, 422, 469
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MboII	GAAGA	3 cut(s)	109, 182, 475
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	3 cut(s)	50, 187, 278
MmeI	TCCRAC	2 cut(s)	248, 289
MnlI	CCTC	3 cut(s)	186, 211, 364
MroNI	GCCGGC	1 cut(s)	35
MroXI	GAANNNNTTC	2 cut(s)	113, 214
MslI	CAYNNNNRTG	1 cut(s)	476
MspI	CCGG	1 cut(s)	36
Mva1269I	GAATGC	1 cut(s)	300
MwoI	GCNNNNNNNGC	1 cut(s)	408
NaeI	GCCGGC	1 cut(s)	37
NdeII	GATC	1 cut(s)	334
NgoMIV	GCCGGC	1 cut(s)	35
NlaIV	GGNNCC	1 cut(s)	29
NmuCI	GTSAC	3 cut(s)	7, 422, 469
OliI	CACNNNNGTG	1 cut(s)	476
PciSI	GCTCTTC	1 cut(s)	165
PctI	GAATGC	1 cut(s)	300
PdiI	GCCGGC	1 cut(s)	37
PdmI	GAANNNNTTC	2 cut(s)	113, 214
PkrI	GCNGC	1 cut(s)	229
Psp124BI	GAGCTC	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	29
RsaI	GTAC	3 cut(s)	184, 320, 352
RsaNI	GTAC	3 cut(s)	183, 319, 351
RseI	CAYNNNNRTG	1 cut(s)	476
SacI	GAGCTC	1 cut(s)	17
SapI	GCTCTTC	1 cut(s)	165
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	1 cut(s)	334
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	4 cut(s)	17, 375, 387, 410
SmiMI	CAYNNNNRTG	1 cut(s)	476
Sse9I	AATT	3 cut(s)	50, 187, 278
SsiI	CCGC	2 cut(s)	33, 439
SstI	GAGCTC	1 cut(s)	17
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	3 cut(s)	164, 394, 469
TaqI	TCGA	3 cut(s)	276, 289, 379
TasI	AATT	3 cut(s)	50, 187, 278
TatI	WGTACW	2 cut(s)	318, 350
TscAI	CASTG	1 cut(s)	478
TseFI	GTSAC	3 cut(s)	7, 422, 469
TseI	GCWGC	1 cut(s)	227
Tsp45I	GTSAC	3 cut(s)	7, 422, 469
TspDTI	ATGAA	1 cut(s)	255
TspGWI	ACGGA	3 cut(s)	107, 327, 359
TspRI	CASTG	1 cut(s)	478
XapI	RAATTY	1 cut(s)	187
XmnI	GAANNNNTTC	2 cut(s)	113, 214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.