Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002094

Physical Location & Seq

Genomic Coordinates Forward (+)

13789013 .. 13796636

Gene Structure 7624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG176100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3075 bp

ATGGTGGCCACGAGCTCCCCGGACTGGCTCCCCGCTGGCTGGAGCGTCCAATTCAGAGCGCAGAACAGGGGTCGCAGAACTGCGATTTACACAGATTTGGAAACTGGGAAAAAGTTCTTCTCCAAGGACGATGTTATACGCTATACTAAAAAAGCCACCAACCGTGGTGAAGAGCCTCAGCCTACAAATACCAAAACCCCCTCAGATAGAAGTCATTCGCAACTGGCAGCAAACACAGATGAATGTCCTGAATGGTTGCCAGATGGTTGGAAAGTCGAATTGAGAACTCGAAAAACTGGCATTCAAGTTGGAAGGGAGTACAAGTGTTACATTGATCCGTTGACGGAATGTACATTTTATTCCAAGCCAGAGGTATTTCGATACCTGAAAACTGTAAAGCGCAAGAGCTGCAAATCCAGAAGTCACAAAATGGTAAACCGCAAGAGATGTATAATCAAAACGAAGACTATCACTGCCGTGCAGTTGCCAAGCAAAGTTGTGGTTGAGAAGCATAATGTGGAAGATTTACCGCCAGGGTGGATATTGGAGGTCAAAGTTAGAAAGGTTGCAAATCGAATTAGAAGAGATCCGTATTACACTGATCCAGTGCATGGATATGTCTTCCGCTCCAAAAAGGAAGTTATCCGCTACCTACAAACTGGAGAGACCAGTAAACATACAATCAAACCAAAGAGCATGGGCACCAATGATCTAAAGTTGACTGATGATGAAATTGCACTGTCATCTGCAACTAAAAAGCAAAAATTGAAGCACCCTGTCACCAGGCGGCAGCTTTCTGAAGCTAAAAAGAGTTATGAACCGAGTGACCTAGACTCGCAAGAAACTGAAAACTCCAAATTGCAAGACAAGAGGCCCACTGAAAGCATATGTGCTTTGGCTCCAGTTACTGAGGTTATCCTAGAGAAGCATTTCACTGAGAATCTGGTTGAAGAATGTGTAGAAACTGAGGGAGACTGTTCCCCAAGATGGTCATCACAACCGAAAGCTGAACCATCTAGCAAACACGAAGGCAAAAGGTCATCACAACCGCAAGCTGTACTCTCTAACAAACGTGAGGCTAAAAGGTCCAAGTTGCAAGACAAGAGGGTAACTGATGAAAGCAAAGTTGCTTTGGCTCCGACAGCTGAGGCTGTCCCACATGAGCATTTAAGTGAGAGTGTGGTTGAAAATTGTGCCAAAACCAAGGAAGATTGTTCTCCAAGCAAGTCATTACAGCCAAAAGCTGAACTCTCCAACAAGTGTGAAGATCCTGGCAAAGTGGTTTTTTCTGAAGATGACCCTGCTTTGACTCCTGCTGCTAACACCTTGAATAAGAACTCACATATGAGTCGGATGGAAAGGAGAAACACCAGGAGATCCCAAATAGATGCAAGAAAATCAAAACAGAAGGAAAAGCTTAATTTGCCACGTCGGTCCTCAAAACGACTTGCTGGGCTTGAACCAGAGCCAGTAAATAGCCTGGTTTCCACTGTACAGGCTCTTCAAGTTACAACTAGAAAGTCTAGTAAAGGTGATGGCAGTCGAGATGCCGGTTTGGCTTTAGATGATTTTGTAAATAGAGCATCTCAGCAGCTTGGGGATGCATCAGAAACAGAGGTTGCACATCATACTATAACTGGAATAATATCTACAGTACAAGGAGAGCCATTGAGCAAGATCAAGAGGCCATTTGATGGTCTTGAAGTACAGCCTGTAGATACCATGGTTTCCAATGAACAAACTCTTCACGTTGCAACTAGAAAGTCTAGTAGAGGTGATGCAAGTCGAGATGCGGGTTTGGCTTCAGATGATTTTATCAATGGAGCATCTCTGCAGCTTGGGGATGCATCAGAACCAGAGGCTGCACATGATAGGTTAACTGACATAAACTGTACATCACATGGAGAATCATTAAACAAGGGCAAGACGTTTCTTGATGACCAAGTGGTTCCTAACGAGCAACATCATAGGCTGGAACCTGAGAAAATGGACGCTGAGAAGCCTGGACCAGAGCTCTGCTTTCTGTTTGGATCAGACCCATGCTTAGAATTTGCCTTCAAAACCCTTACTGGCGAATTGCCAATAGCTGATGCTGTGGATAACGAATCTATTTTGAAACCTGCAGCTGATACAGTGCAAAAAGAGAACACACTTGAAACTGGGCGCTGCAGTAGAAAACCAAGGGCAATTTCGAATAAATCTAAGAAAGCTAAAGAACTTAAGTCACCTCATCGGACTTCAAAACGGCTGGCTGGGCTTGAACCTGAGCTGCTGGCCAAACCTATGTCCAGTGAAAGAGGTCTTCGAAATGCAACGGCAAAGTCCTGTAGAAGTAAAGCCCTCCAAGCTGTAGATTCTGCACATGAATCATCTCAGCAGTTTGAGGCTGGGCAAGAGAACAAGGTTGCTCATGATTTGTGTACTGTTATAAACCCTTCAATTCATGAGGAATCATTGAACAAGATTGAGAAATCTCTCAAGGACGAACCTGTTCCTGAGGAGAAACCCCGCGAGTTGGAAATTGAGAAGGCAGCTGTCGAGAATCCAGTGTCACAGTTTTCATTCCCTTTCCTGGATACTTGGTCTGATCCATGCCTTGATTTTGCATTTAAGACCCTTACAGGTGAAATTCCGATAGAGGATGATTTGTTTCAGGGTTACTTTCAGGAAAACCTTGTCACCTCTCACAACCAGAGAGATAGCTTGGCACTGCCAGATTTTGGCTCACCTAACGTTTTCCAAAGTGACATATCACCTCAGTTCGATGCACCAGAACAGTCTGTCTCGGGCCAATTGTTTCCCTTGAATTCTTCTTTGCCACCTGCCGGAAATGTGAGCTTGTCAAATTGCAATGGTGTTGGGTTCGGCCAACAGTTGTCCACGAATTCTTCATTTCTGCCTGCAGGAAATTTGAGATTTTCAAGTGGCAGTGGGGTTGGTTCAGGCCAACATTTATCCGTGAATTCTTCATTCTTACCTGCAGGAAATGTGGGCCAGCCAAATTGGAGTGGGATTGGTACACAGAACCCTTGCTTAGGAAGCAAAAAGGATTTTCATGGAAAGGTGAAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

1024

Amino Acids

113.36

Weight (kDa)

8.37

Isoelectric Point (pI)

53.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	79 - 133	3e-06	Methyl-CpG binding domain
MBD	PF01429	176 - 222	2.6e-06	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63240
fragaria_vesca	FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01911 FvH4_5g01911
malus_domestica	MD06G1076800.v1.1 MD14G1098200.v1.1
prunus_persica	Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1
pyrus_communis	pycom06g07430 pycom06g07440 pycom14g09640
rosa_chinensis	RchiOBHm_Chr7g0198611 RchiOBHm_Chr7g0198661
rosa_laevigata	RLG00000003850 RLG00000003857
rosa_multiflora	Rmu_co8077932.1_g000001 Rmu_co8274787.1_g000001 Rmu_co8506873.1_g000001 Rmu_sc0000220.1_g000017 Rmu_sc0004229.1_g000004
rosa_roxburghii	Rroxscaffold_3G00257550 Rroxscaffold_3G00257620
rosa_rugosa	Rorug07G0048500 Rorug07G0049000 Rorug07G0049100 Rorug07G0049100
rosa_samantha	Rh4BG123200 Rh7AG172000 Rh7AG172600 Rh7BG175400 Rh7BG176100 Rh7CG181500 Rh7CG182000 Rh7DG174500 Rh7DG174900 Rh7DG175200
rosa_wichuraiana	Rw7G015090 Rw7G015150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2429
AarI	CACCTGC	1 cut(s)	2830
Acc36I	ACCTGC	3 cut(s)	2128, 2830, 2986
AccB1I	GGYRCC	1 cut(s)	701
AccB7I	CCANNNNNTGG	3 cut(s)	611, 1694, 2720
AccBSI	CCGCTC	1 cut(s)	627
AccII	CGCG	1 cut(s)	2511
AciI	CCGC	9 cut(s)	33, 439, 530, 625, 646, 787, 1049, 1793, 2509
AclI	AACGTT	1 cut(s)	2733
AclWI	GGATC	7 cut(s)	329, 581, 596, 1262, 1371, 2038, 2582
AcoI	YGGCCR	3 cut(s)	6, 2274, 2866
AcsI	RAATTY	6 cut(s)	2048, 2628, 2806, 2884, 2908, 2962
AcuI	CTGAAG	3 cut(s)	819, 1311, 1788
AfaI	GTAC	9 cut(s)	320, 352, 1059, 1494, 1656, 1707, 1894, 2422, 3019
AflII	CTTAAG	1 cut(s)	2219
AjiI	CACGTC	1 cut(s)	1430
AjnI	CCWGG	7 cut(s)	532, 782, 1270, 1370, 1479, 2002, 2571
AjuI	GAANNNNNNNTTGG	2 cut(s)	2173, 2205
AleI	CACNNNNGTG	1 cut(s)	476
Alw21I	GWGCWC	2 cut(s)	17, 2016
Alw26I	GTCTC	3 cut(s)	659, 966, 2788
AlwI	GGATC	7 cut(s)	329, 581, 596, 1262, 1371, 2038, 2582
AlwNI	CAGNNNCTG	2 cut(s)	908, 1862
Ama87I	CYCGRG	1 cut(s)	2785
AoxI	GGCC	8 cut(s)	6, 872, 1685, 2274, 2788, 2866, 2944, 2992
ApoI	RAATTY	6 cut(s)	2048, 2628, 2806, 2884, 2908, 2962
Asp700I	GAANNNNTTC	4 cut(s)	113, 214, 929, 2490
AspLEI	GCGC	3 cut(s)	61, 402, 2166
AspS9I	GGNCC	6 cut(s)	873, 1086, 1434, 2006, 2788, 2992
AsuC2I	CCSGG	1 cut(s)	20
AsuHPI	GGTGA	9 cut(s)	179, 772, 1544, 1787, 2217, 2636, 2671, 2718, 2745
AsuII	TTCGAA	2 cut(s)	2192, 2305
AvaI	CYCGRG	1 cut(s)	2785
AvaII	GGWCC	3 cut(s)	1086, 1434, 2006
AxyI	CCTNAGG	1 cut(s)	2496
BaeGI	GKGCMC	1 cut(s)	704
BaeI	ACNNNNGTAYC	2 cut(s)	1710, 1743
BalI	TGGCCA	2 cut(s)	8, 2276
BanI	GGYRCC	1 cut(s)	701
BanII	GRGCYC	2 cut(s)	17, 2016
BarI	GAAGNNNNNNTAC	2 cut(s)	1485, 1517
BauI	CACGAG	1 cut(s)	10
BbsI	GAAGAC	3 cut(s)	470, 613, 2294
Bbv12I	GWGCWC	2 cut(s)	17, 2016
BbvCI	CCTCAGC	2 cut(s)	177, 1146
BccI	CCATC	6 cut(s)	257, 981, 1021, 1348, 1529, 1688
BceAI	ACGGC	3 cut(s)	461, 2261, 2331
BciT130I	CCWGG	7 cut(s)	534, 784, 1272, 1372, 1481, 2004, 2573
BciVI	GTATCC	1 cut(s)	2569
BcnI	CCSGG	1 cut(s)	20
BcoDI	GTCTC	3 cut(s)	659, 966, 2788
BfaI	CTAG	7 cut(s)	830, 920, 1017, 1515, 1524, 1758, 1767
BfmI	CTRYAG	9 cut(s)	1650, 1713, 1832, 2121, 2167, 2326, 2349, 2901, 2979
BfoI	RGCGCY	1 cut(s)	2167
BfrI	CTTAAG	1 cut(s)	2219
BfuAI	ACCTGC	3 cut(s)	2128, 2830, 2986
BfuI	GTATCC	1 cut(s)	2569
BglI	GCCNNNNNGGC	1 cut(s)	1556
Bme1390I	CCNGG	8 cut(s)	20, 534, 784, 1272, 1372, 1481, 2004, 2573
Bme18I	GGWCC	3 cut(s)	1086, 1434, 2006
BmeT110I	CYCGRG	1 cut(s)	2785
BmgBI	CACGTC	1 cut(s)	1430
BmgT120I	GGNCC	6 cut(s)	873, 1086, 1434, 2006, 2788, 2992
BmiI	GGNNCC	6 cut(s)	29, 703, 900, 1137, 1950, 1977
BmrFI	CCNGG	8 cut(s)	20, 534, 784, 1272, 1372, 1481, 2004, 2573
BmrI	ACTGGG	2 cut(s)	114, 2169
BmuI	ACTGGG	2 cut(s)	114, 2169
BpiI	GAAGAC	3 cut(s)	470, 613, 2294
BpmI	CTGGAG	3 cut(s)	61, 681, 885
Bpu10I	CCTNAGC	4 cut(s)	177, 1146, 2265, 3034
Bpu14I	TTCGAA	2 cut(s)	2192, 2305
BpuEI	CTTGAG	1 cut(s)	2462
BpuMI	CCSGG	1 cut(s)	20
BsaBI	GATNNNNATC	1 cut(s)	991
BsaI	GGTCTC	1 cut(s)	659
BsaJI	CCNNGG	7 cut(s)	18, 123, 163, 533, 1203, 1722, 2180
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bse118I	RCCGGY	1 cut(s)	1550
Bse21I	CCTNAGG	1 cut(s)	2496
Bse3DI	GCAATG	1 cut(s)	2857
Bse8I	GATNNNNATC	1 cut(s)	991
BseBI	CCWGG	7 cut(s)	534, 784, 1272, 1372, 1481, 2004, 2573
BseDI	CCNNGG	7 cut(s)	18, 123, 163, 533, 1203, 1722, 2180
BseGI	GGATG	4 cut(s)	1359, 1606, 1849, 2647
BseJI	GATNNNNATC	1 cut(s)	991
BseMI	GCAATG	1 cut(s)	2857
BseRI	GAGGAG	1 cut(s)	2513
BseSI	GKGCMC	1 cut(s)	704
BseYI	CCCAGC	3 cut(s)	1451, 2252, 2387
BsgI	GTGCAG	3 cut(s)	500, 1848, 2343
Bsh1236I	CGCG	1 cut(s)	2511
BshFI	GGCC	8 cut(s)	8, 874, 1687, 2276, 2790, 2868, 2946, 2994
BshNI	GGYRCC	1 cut(s)	701
BsiHKAI	GWGCWC	2 cut(s)	17, 2016
BsiHKCI	CYCGRG	1 cut(s)	2785
BsiSI	CCGG	3 cut(s)	20, 1551, 2826
BslFI	GGGAC	1 cut(s)	1139
BsmAI	GTCTC	3 cut(s)	659, 966, 2788
BsmFI	GGGAC	1 cut(s)	1139
BsmI	GAATGC	1 cut(s)	300
BsnI	GGCC	8 cut(s)	8, 874, 1687, 2276, 2790, 2868, 2946, 2994
Bso31I	GGTCTC	1 cut(s)	659
BsoBI	CYCGRG	1 cut(s)	2785
Bsp119I	TTCGAA	2 cut(s)	2192, 2305
Bsp1286I	GDGCHC	3 cut(s)	17, 704, 2016
Bsp1407I	TGTACA	3 cut(s)	350, 1492, 1892
Bsp143I	GATC	9 cut(s)	334, 586, 601, 709, 1267, 1376, 1677, 2030, 2587
Bsp19I	CCATGG	1 cut(s)	1722
BspACI	CCGC	9 cut(s)	33, 439, 530, 625, 646, 787, 1049, 1793, 2509
BspANI	GGCC	8 cut(s)	8, 874, 1687, 2276, 2790, 2868, 2946, 2994
BspFNI	CGCG	1 cut(s)	2511
BspHI	TCATGA	2 cut(s)	2410, 2443
BspLI	GGNNCC	6 cut(s)	29, 703, 900, 1137, 1950, 1977
BspMAI	CTGCAG	5 cut(s)	1836, 2125, 2171, 2905, 2983
BspMI	ACCTGC	3 cut(s)	2128, 2830, 2986
BspPI	GGATC	7 cut(s)	329, 581, 596, 1262, 1371, 2038, 2582
BspQI	GCTCTTC	2 cut(s)	165, 1506
BspT104I	TTCGAA	2 cut(s)	2192, 2305
BspT107I	GGYRCC	1 cut(s)	701
BspTI	CTTAAG	1 cut(s)	2219
BspTNI	GGTCTC	1 cut(s)	659
BsrBI	CCGCTC	1 cut(s)	627
BsrDI	GCAATG	1 cut(s)	2857
BsrFI	RCCGGY	1 cut(s)	1550
BsrGI	TGTACA	3 cut(s)	350, 1492, 1892
BssAI	RCCGGY	1 cut(s)	1550
BssECI	CCNNGG	7 cut(s)	18, 123, 163, 533, 1203, 1722, 2180
BssMI	GATC	9 cut(s)	334, 586, 601, 709, 1267, 1376, 1677, 2030, 2587
BssSI	CACGAG	1 cut(s)	10
BssT1I	CCWWGG	4 cut(s)	123, 1203, 1722, 2180
Bst2BI	CACGAG	1 cut(s)	10
Bst2UI	CCWGG	7 cut(s)	534, 784, 1272, 1372, 1481, 2004, 2573
Bst6I	CTCTTC	4 cut(s)	165, 577, 1506, 1749
BstAFI	CTTAAG	1 cut(s)	2219
BstAPI	GCANNNNNTGC	1 cut(s)	408
BstAUI	TGTACA	3 cut(s)	350, 1492, 1892
BstBI	TTCGAA	2 cut(s)	2192, 2305
BstC8I	GCNNGC	6 cut(s)	37, 1053, 2250, 2274, 2901, 2996
BstDSI	CCRYGG	2 cut(s)	163, 1722
BstENI	CCTNNNNNAGG	1 cut(s)	3033
BstF5I	GGATG	4 cut(s)	1359, 1606, 1849, 2647
BstFNI	CGCG	1 cut(s)	2511
BstH2I	RGCGCY	1 cut(s)	2167
BstHHI	GCGC	3 cut(s)	61, 402, 2166
BstKTI	GATC	9 cut(s)	337, 589, 604, 712, 1270, 1379, 1680, 2033, 2590
BstMAI	GTCTC	3 cut(s)	659, 966, 2788
BstMBI	GATC	9 cut(s)	334, 586, 601, 709, 1267, 1376, 1677, 2030, 2587
BstMWI	GCNNNNNNNGC	8 cut(s)	408, 1142, 1423, 1556, 1799, 2254, 2345, 3039
BstNI	CCWGG	7 cut(s)	534, 784, 1272, 1372, 1481, 2004, 2573
BstSCI	CCNGG	8 cut(s)	18, 532, 782, 1270, 1370, 1479, 2002, 2571
BstSFI	CTRYAG	9 cut(s)	1650, 1713, 1832, 2121, 2167, 2326, 2349, 2901, 2979
BstSLI	GKGCMC	1 cut(s)	704
BstUI	CGCG	1 cut(s)	2511
BstV2I	GAAGAC	3 cut(s)	470, 613, 2294
BstX2I	RGATCY	3 cut(s)	586, 1267, 1376
BstXI	CCANNNNNNTGG	1 cut(s)	267
BstYI	RGATCY	3 cut(s)	586, 1267, 1376
Bsu36I	CCTNAGG	1 cut(s)	2496
BsuI	GTATCC	1 cut(s)	2569
BsuRI	GGCC	8 cut(s)	8, 874, 1687, 2276, 2790, 2868, 2946, 2994
BtgI	CCRYGG	2 cut(s)	163, 1722
BtrI	CACGTC	1 cut(s)	1430
BtsCI	GGATG	4 cut(s)	1359, 1606, 1849, 2647
BtsI	GCAGTG	3 cut(s)	471, 2708, 2935
BveI	ACCTGC	3 cut(s)	2128, 2830, 2986
Cac8I	GCNNGC	6 cut(s)	37, 1053, 2250, 2274, 2901, 2996
CaiI	CAGNNNCTG	2 cut(s)	908, 1862
CciI	TCATGA	2 cut(s)	2410, 2443
CfoI	GCGC	3 cut(s)	61, 402, 2166
Cfr10I	RCCGGY	1 cut(s)	1550
Cfr13I	GGNCC	6 cut(s)	873, 1086, 1434, 2006, 2788, 2992
CseI	GACGC	2 cut(s)	34, 2000
Csp6I	GTAC	9 cut(s)	319, 351, 1058, 1493, 1655, 1706, 1893, 2421, 3018
CviQI	GTAC	9 cut(s)	319, 351, 1058, 1493, 1655, 1706, 1893, 2421, 3018
DpnI	GATC	9 cut(s)	336, 588, 603, 711, 1269, 1378, 1679, 2032, 2589
DpnII	GATC	9 cut(s)	334, 586, 601, 709, 1267, 1376, 1677, 2030, 2587
EaeI	YGGCCR	3 cut(s)	6, 2274, 2866
Eam1104I	CTCTTC	4 cut(s)	165, 577, 1506, 1749
EarI	CTCTTC	4 cut(s)	165, 577, 1506, 1749
Ecl136II	GAGCTC	2 cut(s)	15, 2014
Eco130I	CCWWGG	4 cut(s)	123, 1203, 1722, 2180
Eco24I	GRGCYC	2 cut(s)	17, 2016
Eco31I	GGTCTC	1 cut(s)	659
Eco47I	GGWCC	3 cut(s)	1086, 1434, 2006
Eco53kI	GAGCTC	2 cut(s)	15, 2014
Eco57I	CTGAAG	3 cut(s)	819, 1311, 1788
Eco81I	CCTNAGG	1 cut(s)	2496
Eco88I	CYCGRG	1 cut(s)	2785
EcoICRI	GAGCTC	2 cut(s)	15, 2014
EcoNI	CCTNNNNNAGG	1 cut(s)	3033
EcoRI	GAATTC	3 cut(s)	2806, 2884, 2962
EcoRII	CCWGG	7 cut(s)	532, 782, 1270, 1370, 1479, 2002, 2571
EcoT14I	CCWWGG	4 cut(s)	123, 1203, 1722, 2180
EcoT22I	ATGCAT	2 cut(s)	1606, 1849
EcoT38I	GRGCYC	2 cut(s)	17, 2016
ErhI	CCWWGG	4 cut(s)	123, 1203, 1722, 2180
FaqI	GGGAC	1 cut(s)	1139
FauI	CCCGC	3 cut(s)	40, 1786, 2516
FauNDI	CATATG	2 cut(s)	887, 1344
FokI	GGATG	4 cut(s)	1366, 1613, 1856, 2654
FriOI	GRGCYC	2 cut(s)	17, 2016
FspBI	CTAG	7 cut(s)	830, 920, 1017, 1515, 1524, 1758, 1767
GlaI	GCGC	3 cut(s)	60, 401, 2165
GsaI	CCCAGC	3 cut(s)	1455, 2256, 2391
GsuI	CTGGAG	3 cut(s)	61, 681, 885
HaeII	RGCGCY	1 cut(s)	2167
HaeIII	GGCC	8 cut(s)	8, 874, 1687, 2276, 2790, 2868, 2946, 2994
HapII	CCGG	3 cut(s)	20, 1551, 2826
HgaI	GACGC	2 cut(s)	34, 2000
HhaI	GCGC	3 cut(s)	61, 402, 2166
Hin6I	GCGC	3 cut(s)	59, 400, 2164
HinP1I	GCGC	3 cut(s)	59, 400, 2164
HincII	GTYRAC	3 cut(s)	342, 720, 1878
HindII	GTYRAC	3 cut(s)	342, 720, 1878
HindIII	AAGCTT	1 cut(s)	1415
HpaI	GTTAAC	1 cut(s)	1878
HpaII	CCGG	3 cut(s)	20, 1551, 2826
HphI	GGTGA	9 cut(s)	179, 772, 1544, 1787, 2217, 2636, 2671, 2718, 2745
Hpy166II	GTNNAC	8 cut(s)	342, 436, 674, 720, 1878, 2421, 2880, 3020
Hpy8I	GTNNAC	8 cut(s)	342, 436, 674, 720, 1878, 2421, 2880, 3020
Hpy99I	CGWCG	1 cut(s)	1434
HpyAV	CCTTC	6 cut(s)	306, 1022, 1402, 2065, 2445, 2521
HpyCH4IV	ACGT	5 cut(s)	1072, 1429, 1749, 1928, 2733
HpyF10VI	GCNNNNNNNGC	8 cut(s)	408, 1142, 1423, 1556, 1799, 2254, 2345, 3039
HpySE526I	ACGT	5 cut(s)	1072, 1429, 1749, 1928, 2733
HspAI	GCGC	3 cut(s)	59, 400, 2164
KspAI	GTTAAC	1 cut(s)	1878
Kzo9I	GATC	9 cut(s)	334, 586, 601, 709, 1267, 1376, 1677, 2030, 2587
LguI	GCTCTTC	2 cut(s)	165, 1506
LmnI	GCTCC	7 cut(s)	20, 33, 42, 632, 904, 1141, 1823
MaeI	CTAG	7 cut(s)	830, 920, 1017, 1515, 1524, 1758, 1767
MaeII	ACGT	5 cut(s)	1072, 1429, 1749, 1928, 2733
MalI	GATC	9 cut(s)	336, 588, 603, 711, 1269, 1378, 1679, 2032, 2589
MbiI	CCGCTC	1 cut(s)	627
MboI	GATC	9 cut(s)	334, 586, 601, 709, 1267, 1376, 1677, 2030, 2587
MfeI	CAATTG	1 cut(s)	2792
MflI	RGATCY	3 cut(s)	586, 1267, 1376
MhlI	GDGCHC	3 cut(s)	17, 704, 2016
MlsI	TGGCCA	2 cut(s)	8, 2276
MluNI	TGGCCA	2 cut(s)	8, 2276
MlyI	GAGTC	3 cut(s)	827, 1303, 1357
MmeI	TCCRAC	6 cut(s)	248, 289, 1163, 1278, 1331, 2496
Mox20I	TGGCCA	2 cut(s)	8, 2276
Mph1103I	ATGCAT	2 cut(s)	1606, 1849
MroXI	GAANNNNTTC	4 cut(s)	113, 214, 929, 2490
MscI	TGGCCA	2 cut(s)	8, 2276
MseI	TTAA	6 cut(s)	1169, 1419, 1877, 1913, 2220, 2610
MslI	CAYNNNNRTG	3 cut(s)	476, 615, 1170
Msp20I	TGGCCA	2 cut(s)	8, 2276
MspA1I	CMGCKG	4 cut(s)	35, 1145, 2126, 2534
MspCI	CTTAAG	1 cut(s)	2219
MspI	CCGG	3 cut(s)	20, 1551, 2826
MspR9I	CCNGG	8 cut(s)	20, 534, 784, 1272, 1372, 1481, 2004, 2573
MunI	CAATTG	1 cut(s)	2792
Mva1269I	GAATGC	1 cut(s)	300
MvaI	CCWGG	7 cut(s)	534, 784, 1272, 1372, 1481, 2004, 2573
MvnI	CGCG	1 cut(s)	2511
MwoI	GCNNNNNNNGC	8 cut(s)	408, 1142, 1423, 1556, 1799, 2254, 2345, 3039
NciI	CCSGG	1 cut(s)	20
NcoI	CCATGG	1 cut(s)	1722
NdeI	CATATG	2 cut(s)	887, 1344
NdeII	GATC	9 cut(s)	334, 586, 601, 709, 1267, 1376, 1677, 2030, 2587
NlaIV	GGNNCC	6 cut(s)	29, 703, 900, 1137, 1950, 1977
NmuCI	GTSAC	7 cut(s)	422, 778, 824, 2223, 2550, 2677, 2744
NsiI	ATGCAT	2 cut(s)	1606, 1849
NspV	TTCGAA	2 cut(s)	2192, 2305
OliI	CACNNNNGTG	1 cut(s)	476
PagI	TCATGA	2 cut(s)	2410, 2443
PaqCI	CACCTGC	1 cut(s)	2830
PciSI	GCTCTTC	2 cut(s)	165, 1506
PctI	GAATGC	1 cut(s)	300
PdmI	GAANNNNTTC	4 cut(s)	113, 214, 929, 2490
PfeI	GAWTC	7 cut(s)	940, 1907, 2105, 2354, 2366, 2450, 2542
PflMI	CCANNNNNTGG	3 cut(s)	611, 1694, 2720
PfoI	TCCNGGA	1 cut(s)	2571
PleI	GAGTC	3 cut(s)	827, 1303, 1356
PpsI	GAGTC	3 cut(s)	827, 1303, 1356
PsiI	TTATAA	1 cut(s)	2429
Psp124BI	GAGCTC	2 cut(s)	17, 2016
Psp1406I	AACGTT	1 cut(s)	2733
Psp6I	CCWGG	7 cut(s)	532, 782, 1270, 1370, 1479, 2002, 2571
PspFI	CCCAGC	3 cut(s)	1451, 2252, 2387
PspGI	CCWGG	7 cut(s)	532, 782, 1270, 1370, 1479, 2002, 2571
PspN4I	GGNNCC	6 cut(s)	29, 703, 900, 1137, 1950, 1977
PspPI	GGNCC	6 cut(s)	873, 1086, 1434, 2006, 2788, 2992
PstI	CTGCAG	5 cut(s)	1836, 2125, 2171, 2905, 2983
PstNI	CAGNNNCTG	2 cut(s)	908, 1862
PsuI	RGATCY	3 cut(s)	586, 1267, 1376
PvuII	CAGCTG	3 cut(s)	1145, 2126, 2534
RsaI	GTAC	9 cut(s)	320, 352, 1059, 1494, 1656, 1707, 1894, 2422, 3019
RsaNI	GTAC	9 cut(s)	319, 351, 1058, 1493, 1655, 1706, 1893, 2421, 3018
RseI	CAYNNNNRTG	3 cut(s)	476, 615, 1170
SacI	GAGCTC	2 cut(s)	17, 2016
SapI	GCTCTTC	2 cut(s)	165, 1506
SaqAI	TTAA	6 cut(s)	1169, 1419, 1877, 1913, 2220, 2610
Sau3AI	GATC	9 cut(s)	334, 586, 601, 709, 1267, 1376, 1677, 2030, 2587
Sau96I	GGNCC	6 cut(s)	873, 1086, 1434, 2006, 2788, 2992
SbfI	CCTGCAGG	2 cut(s)	2905, 2983
SchI	GAGTC	3 cut(s)	827, 1303, 1357
ScrFI	CCNGG	8 cut(s)	20, 534, 784, 1272, 1372, 1481, 2004, 2573
SdaI	CCTGCAGG	2 cut(s)	2905, 2983
SduI	GDGCHC	3 cut(s)	17, 704, 2016
SfcI	CTRYAG	9 cut(s)	1650, 1713, 1832, 2121, 2167, 2326, 2349, 2901, 2979
SfuI	TTCGAA	2 cut(s)	2192, 2305
SinI	GGWCC	3 cut(s)	1086, 1434, 2006
SmiMI	CAYNNNNRTG	3 cut(s)	476, 615, 1170
SmlI	CTYRAG	2 cut(s)	2219, 2477
SmoI	CTYRAG	2 cut(s)	2219, 2477
Sse8387I	CCTGCAGG	2 cut(s)	2905, 2983
SsiI	CCGC	9 cut(s)	33, 439, 530, 625, 646, 787, 1049, 1793, 2509
SspMI	CTAG	7 cut(s)	830, 920, 1017, 1515, 1524, 1758, 1767
SstI	GAGCTC	2 cut(s)	17, 2016
StyD4I	CCNGG	8 cut(s)	18, 532, 782, 1270, 1370, 1479, 2002, 2571
StyI	CCWWGG	4 cut(s)	123, 1203, 1722, 2180
TaiI	ACGT	5 cut(s)	1075, 1432, 1752, 1931, 2736
TaqII	GACCGA	1 cut(s)	1422
TatI	WGTACW	8 cut(s)	318, 350, 1057, 1492, 1654, 1705, 1892, 2420
TauI	GCSGC	1 cut(s)	790
TfiI	GAWTC	7 cut(s)	940, 1907, 2105, 2354, 2366, 2450, 2542
Tru1I	TTAA	6 cut(s)	1169, 1419, 1877, 1913, 2220, 2610
Tru9I	TTAA	6 cut(s)	1169, 1419, 1877, 1913, 2220, 2610
TseFI	GTSAC	7 cut(s)	422, 778, 824, 2223, 2550, 2677, 2744
Tsp45I	GTSAC	7 cut(s)	422, 778, 824, 2223, 2550, 2677, 2744
TspGWI	ACGGA	4 cut(s)	327, 359, 579, 2947
Van91I	CCANNNNNTGG	3 cut(s)	611, 1694, 2720
Vha464I	CTTAAG	1 cut(s)	2219
VpaK11BI	GGWCC	3 cut(s)	1086, 1434, 2006
XagI	CCTNNNNNAGG	1 cut(s)	3033
XapI	RAATTY	6 cut(s)	2048, 2628, 2806, 2884, 2908, 2962
XmnI	GAANNNNTTC	4 cut(s)	113, 214, 929, 2490
XspI	CTAG	7 cut(s)	830, 920, 1017, 1515, 1524, 1758, 1767
Zsp2I	ATGCAT	2 cut(s)	1606, 1849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.