Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004229.1

Orthogroup ID

OG0002094

Physical Location & Seq

Genomic Coordinates Reverse (-)

14487 .. 14972

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004229.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atgtctgaaactgagaaggctgctgtcgagaatccacagttggacttctcatcccttttcccggatacttggtccgattctgacccattctttgatcttgcatatcagagtcttagagaggatgatctgtttcaggcttactttcaggaaaattacaaccagatagatggctcggcactgccagagtttggctcacctagcattttccagaatgacatgtttgatccaccagaagaatatgtcccaggacacctgctgcccatgaattcttctttgccacctgcggaaaatgtgagccagccattatccatgaattcttcatcccagcctgcaggaattgagggcttttcaaatggcaatggggttggttcagaccaacagttatccatgaattcttcattcttgccagcaggaaatgtggtctcatcaaactcaagtggggttggtacacagaagccttgcttcggaggcaaacaggaagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

161

Amino Acids

17.41

Weight (kDa)

4.05

Isoelectric Point (pI)

58.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63240
fragaria_vesca	FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01911 FvH4_5g01911
malus_domestica	MD06G1076800.v1.1 MD14G1098200.v1.1
prunus_persica	Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1
pyrus_communis	pycom06g07430 pycom06g07440 pycom14g09640
rosa_chinensis	RchiOBHm_Chr7g0198611 RchiOBHm_Chr7g0198661
rosa_laevigata	RLG00000003850 RLG00000003857
rosa_multiflora	Rmu_co8077932.1_g000001 Rmu_co8274787.1_g000001 Rmu_co8506873.1_g000001 Rmu_sc0000220.1_g000017 Rmu_sc0004229.1_g000004
rosa_roxburghii	Rroxscaffold_3G00257550 Rroxscaffold_3G00257620
rosa_rugosa	Rorug07G0048500 Rorug07G0049000 Rorug07G0049100 Rorug07G0049100
rosa_samantha	Rh4BG123200 Rh7AG172000 Rh7AG172600 Rh7BG175400 Rh7BG176100 Rh7CG181500 Rh7CG182000 Rh7DG174500 Rh7DG174900 Rh7DG175200
rosa_wichuraiana	Rw7G015090 Rw7G015150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	261, 289
Acc36I	ACCTGC	2 cut(s)	261, 289
AccB7I	CCANNNNNTGG	1 cut(s)	188
AciI	CCGC	1 cut(s)	284
AclWI	GGATC	1 cut(s)	218
AcsI	RAATTY	3 cut(s)	265, 313, 391
AfaI	GTAC	1 cut(s)	448
AfiI	CCNNNNNNNGG	3 cut(s)	61, 188, 464
AflIII	ACRYGT	1 cut(s)	216
AgsI	TTSAA	1 cut(s)	351
AjnI	CCWGG	1 cut(s)	244
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
Alw26I	GTCTC	1 cut(s)	427
AlwI	GGATC	1 cut(s)	218
ApeKI	GCWGC	2 cut(s)	20, 256
ApoI	RAATTY	3 cut(s)	265, 313, 391
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
AspS9I	GGNCC	1 cut(s)	72
AsuC2I	CCSGG	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	186
AvaII	GGWCC	1 cut(s)	72
BbvI	GCAGC	2 cut(s)	7, 243
BccI	CCATC	1 cut(s)	161
BciT130I	CCWGG	1 cut(s)	246
BciVI	GTATCC	1 cut(s)	58
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	427
BfaI	CTAG	1 cut(s)	198
BfmI	CTRYAG	1 cut(s)	330
BfuAI	ACCTGC	2 cut(s)	261, 289
BfuI	GTATCC	1 cut(s)	58
BisI	GCNGC	2 cut(s)	21, 257
BlsI	GCNGC	2 cut(s)	22, 258
Bme1390I	CCNGG	2 cut(s)	62, 246
Bme18I	GGWCC	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	72
BmrFI	CCNGG	2 cut(s)	62, 246
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BpuEI	CTTGAG	1 cut(s)	418
BpuMI	CCSGG	1 cut(s)	62
BsaI	GGTCTC	1 cut(s)	427
BsaJI	CCNNGG	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 188, 464
Bse3DI	GCAATG	1 cut(s)	364
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	3 cut(s)	50, 127, 320
BseLI	CCNNNNNNNGG	3 cut(s)	61, 188, 464
BseMI	GCAATG	1 cut(s)	364
BseXI	GCAGC	2 cut(s)	7, 243
BseYI	CCCAGC	1 cut(s)	324
BsiSI	CCGG	1 cut(s)	62
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	3 cut(s)	61, 188, 464
BsmAI	GTCTC	1 cut(s)	427
BsmFI	GGGAC	1 cut(s)	227
Bso31I	GGTCTC	1 cut(s)	427
Bsp143I	GATC	3 cut(s)	94, 124, 223
BspACI	CCGC	1 cut(s)	284
BspCNI	CTCAG	1 cut(s)	4
BspMAI	CTGCAG	1 cut(s)	334
BspMI	ACCTGC	2 cut(s)	261, 289
BspPI	GGATC	1 cut(s)	218
BspTNI	GGTCTC	1 cut(s)	427
BsrDI	GCAATG	1 cut(s)	364
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	3 cut(s)	94, 124, 223
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	39, 381
BstC8I	GCNNGC	3 cut(s)	299, 330, 408
BstDEI	CTNAG	2 cut(s)	12, 113
BstF5I	GGATG	3 cut(s)	50, 127, 320
BstKTI	GATC	3 cut(s)	97, 127, 226
BstMAI	GTCTC	1 cut(s)	427
BstMBI	GATC	3 cut(s)	94, 124, 223
BstMWI	GCNNNNNNNGC	2 cut(s)	198, 468
BstNI	CCWGG	1 cut(s)	246
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	2 cut(s)	60, 244
BstSFI	CTRYAG	1 cut(s)	330
BstV1I	GCAGC	2 cut(s)	7, 243
BstXI	CCANNNNNNTGG	1 cut(s)	167
BsuI	GTATCC	1 cut(s)	58
BtsCI	GGATG	3 cut(s)	50, 127, 320
BtsI	GCAGTG	1 cut(s)	176
BtsIMutI	CAGTG	1 cut(s)	176
BveI	ACCTGC	2 cut(s)	261, 289
Cac8I	GCNNGC	3 cut(s)	299, 330, 408
Cfr13I	GGNCC	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	447
CviAII	CATG	4 cut(s)	217, 262, 310, 388
CviJI	RGCY	9 cut(s)	20, 137, 171, 192, 297, 301, 328, 345, 457
CviKI_1	RGCY	9 cut(s)	20, 137, 171, 192, 297, 301, 328, 345, 457
CviQI	GTAC	1 cut(s)	447
DdeI	CTNAG	2 cut(s)	12, 113
DpnI	GATC	3 cut(s)	96, 126, 225
DpnII	GATC	3 cut(s)	94, 124, 223
Eco31I	GGTCTC	1 cut(s)	427
Eco47I	GGWCC	1 cut(s)	72
EcoRI	GAATTC	3 cut(s)	265, 313, 391
EcoRII	CCWGG	1 cut(s)	244
FaeI	CATG	4 cut(s)	220, 265, 313, 391
FaiI	YATR	6 cut(s)	103, 218, 240, 263, 311, 389
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	4 cut(s)	216, 261, 309, 387
Fnu4HI	GCNGC	2 cut(s)	21, 257
FokI	GGATG	3 cut(s)	37, 134, 307
Fsp4HI	GCNGC	2 cut(s)	21, 257
FspBI	CTAG	1 cut(s)	198
GluI	GCNGC	2 cut(s)	21, 257
GsaI	CCCAGC	1 cut(s)	328
HapII	CCGG	1 cut(s)	62
Hin1II	CATG	4 cut(s)	220, 265, 313, 391
HinfI	GANTC	3 cut(s)	31, 77, 109
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	1 cut(s)	186
Hpy166II	GTNNAC	1 cut(s)	449
Hpy188I	TCNGA	6 cut(s)	7, 76, 82, 108, 373, 467
Hpy188III	TCNNGA	3 cut(s)	28, 146, 208
Hpy8I	GTNNAC	1 cut(s)	449
HpyAV	CCTTC	1 cut(s)	10
HpyCH4III	ACNGT	2 cut(s)	39, 381
HpyCH4V	TGCA	2 cut(s)	101, 332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	198, 468
HpyF3I	CTNAG	2 cut(s)	12, 113
Hsp92II	CATG	4 cut(s)	220, 265, 313, 391
Kzo9I	GATC	3 cut(s)	94, 124, 223
Lsp1109I	GCAGC	2 cut(s)	7, 243
MaeI	CTAG	1 cut(s)	198
MalI	GATC	3 cut(s)	96, 126, 225
MboI	GATC	3 cut(s)	94, 124, 223
MboII	GAAGA	4 cut(s)	245, 261, 309, 387
MluCI	AATT	5 cut(s)	151, 265, 313, 336, 391
MlyI	GAGTC	1 cut(s)	118
MmeI	TCCRAC	1 cut(s)	21
MnlI	CCTC	3 cut(s)	112, 334, 461
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	2 cut(s)	62, 246
MvaI	CCWGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	2 cut(s)	198, 468
NciI	CCSGG	1 cut(s)	62
NdeII	GATC	3 cut(s)	94, 124, 223
NlaIII	CATG	4 cut(s)	220, 265, 313, 391
NmeAIII	GCCGAG	1 cut(s)	152
NspI	RCATGY	1 cut(s)	220
PaqCI	CACCTGC	2 cut(s)	261, 289
PciI	ACATGT	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	31, 77
PflMI	CCANNNNNTGG	1 cut(s)	188
PfoI	TCCNGGA	1 cut(s)	60
PkrI	GCNGC	2 cut(s)	22, 258
PleI	GAGTC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	117
PscI	ACATGT	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	244
PspFI	CCCAGC	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	72
PstI	CTGCAG	1 cut(s)	334
RsaI	GTAC	1 cut(s)	448
RsaNI	GTAC	1 cut(s)	447
SatI	GCNGC	2 cut(s)	21, 257
Sau3AI	GATC	3 cut(s)	94, 124, 223
Sau96I	GGNCC	1 cut(s)	72
SbfI	CCTGCAGG	1 cut(s)	334
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	2 cut(s)	62, 246
SdaI	CCTGCAGG	1 cut(s)	334
SetI	ASST	3 cut(s)	199, 255, 283
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
Sse8387I	CCTGCAGG	1 cut(s)	334
Sse9I	AATT	5 cut(s)	151, 265, 313, 336, 391
SsiI	CCGC	1 cut(s)	284
SspMI	CTAG	1 cut(s)	198
StyD4I	CCNGG	2 cut(s)	60, 244
TaaI	ACNGT	2 cut(s)	39, 381
TaqI	TCGA	1 cut(s)	27
TasI	AATT	5 cut(s)	151, 265, 313, 336, 391
TfiI	GAWTC	2 cut(s)	31, 77
TscAI	CASTG	1 cut(s)	183
TseI	GCWGC	2 cut(s)	20, 256
TspDTI	ATGAA	5 cut(s)	278, 309, 326, 387, 404
TspRI	CASTG	1 cut(s)	183
Van91I	CCANNNNNTGG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	72
XapI	RAATTY	3 cut(s)	265, 313, 391
XceI	RCATGY	1 cut(s)	220
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.