AT1G63240

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
23455711 .. 23458928
3218 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G63240.1

Sequence Viewer

Length: 1647 bp
ATGTTACGTCAGCTTCCACCAACTATTACGGCGGACGCCACGCCGGATTGGCTTCCCGTCGGTTGGATTGCTCACTCTACAGTTCTAAAACGCGGTCGTCAAACTAGGACATACACGCAATTGAGAACAGGGAAAAAGTTATCTACAAAGGATCAAGTTCTTGAGTACATTAAAATGGAGAAAATACGAGAAAAACGAGAAGCAGGAATCAAGAGGAATAAAGCAAGTTTAAAAGCCTTACAAGATAAAGAGACCGCAAGTGAAAGGCCGTCGTGGCTTCCGGATGAAAGGAAAGCAGAGTTGGAGATTGGTTATGTTGGTGGAAACCCTTACAAGATGAATGTGAACACATCAAATGATTTTAACACCAATCCAAAGGAGACAGTGGTATTAGATGAGAACTCTATGGAATCTGAAGATTCATCGGGTGAAGTATACGAAACCGGGTGTAATGAAATTACTTATGCAATTGAGGAGGATGAAGAAGATTTTTCAGAGAGGGAATATGTCGAAAATGTGGAGAATTTCTCTAACATAACCTCTACTCCTCTACGGTCACAGCCAGAAAGAATGCAGAAATTGGAGTCTCGAGCAAAAACACAATGTGTGTTTGAAGATGAGGATCTGAGTAGTGACAGTGACAACAAACTTCCAGAAGCTGAGACTTCAAAAGAAGGAAATGGTTTGGGAGAGGGTCATGTTGTATCTAACCTAGTCGAGTCTTTTGAAAAGAAAACCTCGCATGGTGTTATGGTTGAGTGTGATGATAAGGCGAGGGAGATCCCCGGTTTGACTGGATCATTAACTGTTGAAATCAACCTGGACTGTGAACCTGCAAGTGATAGTTTGGTAGAGAAGAATTGGAATAAAAGTGAGAGCGATGAAACAGGAACAAGAAACATTGAGATCATTGACCTAGAGAGTGACGTGATTCACATAAGTGGCTCATCAAAAGCTGTTGAAGTGACTCAGGAATCAGGCGATACAAGTAAAGAGCCTCTGAAAGCTCAGGAAGAACCTGATAACGACTGGAGAAGTTCGGTCTTCTTTCCAGACAGAGAAGCCCCTTCACATTCTGTACTTGTCTTTGAAAGTTCTAATGCTAGACCATCTGTAGAAGATCTTAGCAACACCATTGAGCTTGGTTTAACCCCGCAAGAGAAGAACATCAGTAGCTCTAAAAAGCGGAAGAAGAATACGGAAAGATGTGCATCTAAGAACATCAAGAAGAAAGGCATTGAAGCACCATCCAGAAAACTTCAGAGAGGCAAAACACCATCAAGCAAATCGCATGGCAAGAAGGGAAGTTCGAGTGTAGGCATGGACAAAAAACCTGATGATTGGCTTAAACCGTGCCCAAACTTCCCATTTGAGCCACTCACAAGATCATTTCAAGTAGAGGATGACTCGGCAATCCGCATGTACTTAGAGCAACACTTTGCAGCTCCTGGGAGTGCTGATAGTAATCTACCTTTACCCGATTTCGGATTGCCTACCTTCTCCGACATCAAAATCTCACTTAATGAAGAACCTGCATTCAAGAAAAAGAAGTCTCCTGATCCTCCATGTGTACAAGTTGCAAGTTCAAACATACCTAGTTGCAGTTCCATGGGTACTAGTATGCTACCAACAGTTGCAGGACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

548

Amino Acids

60.92

Weight (kDa)

5.06

Isoelectric Point (pI)

52.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 841, 1540
AccI GTMKAC 1 cut(s) 435
AccII CGCG 1 cut(s) 93
AccIII TCCGGA 1 cut(s) 280
AciI CCGC 6 cut(s) 32, 93, 255, 1154, 1186, 1417
AclWI GGATC 5 cut(s) 159, 630, 775, 805, 1553
AcsI RAATTY 1 cut(s) 523
AcuI CTGAAG 2 cut(s) 435, 1244
AcyI GRCGYC 1 cut(s) 36
AdeI CACNNNGTG 1 cut(s) 605
AfaI GTAC 5 cut(s) 167, 1080, 1424, 1572, 1615
AfiI CCNNNNNNNGG 2 cut(s) 63, 1484
AhlI ACTAGT 1 cut(s) 1616
AjiI CACGTC 1 cut(s) 928
AjnI CCWGG 2 cut(s) 819, 1447
AjuI GAANNNNNNNTTGG 2 cut(s) 284, 316
AleI CACNNNNGTG 1 cut(s) 939
AluBI AGCT 7 cut(s) 13, 659, 956, 1007, 1141, 1176, 1445
AluI AGCT 7 cut(s) 13, 659, 956, 1007, 1141, 1176, 1445
Alw26I GTCTC 5 cut(s) 245, 374, 591, 656, 1557
AlwI GGATC 5 cut(s) 159, 630, 775, 805, 1553
AlwNI CAGNNNCTG 2 cut(s) 659, 1448
Ama87I CYCGRG 1 cut(s) 588
Aor13HI TCCGGA 1 cut(s) 280
AoxI GGCC 1 cut(s) 266
ApeKI GCWGC 1 cut(s) 1442
ApoI RAATTY 1 cut(s) 523
AsuC2I CCSGG 2 cut(s) 445, 786
AsuHPI GGTGA 1 cut(s) 440
AvaI CYCGRG 1 cut(s) 588
BaeGI GKGCMC 1 cut(s) 1358
BbsI GAAGAC 1 cut(s) 1036
BbvI GCAGC 1 cut(s) 1454
BccI CCATC 3 cut(s) 1117, 1255, 1285
BceAI ACGGC 2 cut(s) 45, 253
BciT130I CCWGG 2 cut(s) 821, 1449
BcnI CCSGG 2 cut(s) 445, 786
BcoDI GTCTC 5 cut(s) 245, 374, 591, 656, 1557
BcuI ACTAGT 1 cut(s) 1616
BfaI CTAG 6 cut(s) 105, 713, 917, 1104, 1596, 1617
BfmI CTRYAG 2 cut(s) 78, 1113
BfuAI ACCTGC 2 cut(s) 841, 1540
BglI GCCNNNNNGGC 2 cut(s) 49, 274
BglII AGATCT 1 cut(s) 1120
BisI GCNGC 1 cut(s) 1443
BlsI GCNGC 1 cut(s) 1444
Bme1390I CCNGG 4 cut(s) 445, 786, 821, 1449
BmeT110I CYCGRG 1 cut(s) 588
BmgBI CACGTC 1 cut(s) 928
BmrFI CCNGG 4 cut(s) 445, 786, 821, 1449
BmsI GCATC 1 cut(s) 1220
BpiI GAAGAC 1 cut(s) 1036
BplI GAGNNNNNCTC 4 cut(s) 512, 544, 1391, 1423
BpmI CTGGAG 1 cut(s) 1051
Bpu10I CCTNAGC 1 cut(s) 1008
BpuEI CTTGAG 1 cut(s) 182
BpuMI CCSGG 2 cut(s) 445, 786
BsaBI GATNNNNATC 3 cut(s) 621, 1210, 1464
BsaHI GRCGYC 1 cut(s) 36
BsaI GGTCTC 1 cut(s) 245
BsaJI CCNNGG 3 cut(s) 784, 1448, 1608
BsaWI WCCGGW 1 cut(s) 280
BsaXI ACNNNNNCTCC 2 cut(s) 529, 559
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 1484
Bse1I ACTGG 2 cut(s) 799, 1034
Bse8I GATNNNNATC 3 cut(s) 621, 1210, 1464
BseAI TCCGGA 1 cut(s) 280
BseBI CCWGG 2 cut(s) 821, 1449
BseDI CCNNGG 3 cut(s) 784, 1448, 1608
BseGI GGATG 4 cut(s) 289, 484, 1247, 1408
BseJI GATNNNNATC 3 cut(s) 621, 1210, 1464
BseLI CCNNNNNNNGG 2 cut(s) 63, 1484
BseMII CTCAG 4 cut(s) 617, 651, 983, 1022
BseNI ACTGG 2 cut(s) 799, 1034
BseRI GAGGAG 2 cut(s) 488, 537
BseSI GKGCMC 1 cut(s) 1358
BseXI GCAGC 1 cut(s) 1454
Bsh1236I CGCG 1 cut(s) 93
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 1 cut(s) 268
BsiEI CGRYCG 1 cut(s) 97
BsiHKCI CYCGRG 1 cut(s) 588
BsiSI CCGG 4 cut(s) 44, 281, 444, 786
BslI CCNNNNNNNGG 2 cut(s) 63, 1484
BsmAI GTCTC 5 cut(s) 245, 374, 591, 656, 1557
BsmI GAATGC 2 cut(s) 576, 1535
BsnI GGCC 1 cut(s) 268
Bso31I GGTCTC 1 cut(s) 245
BsoBI CYCGRG 1 cut(s) 588
Bsp1286I GDGCHC 1 cut(s) 1358
Bsp13I TCCGGA 1 cut(s) 280
Bsp1407I TGTACA 1 cut(s) 1570
Bsp143I GATC 8 cut(s) 151, 622, 780, 797, 906, 1120, 1385, 1558
Bsp19I CCATGG 1 cut(s) 1608
BspACI CCGC 6 cut(s) 32, 93, 255, 1154, 1186, 1417
BspANI GGCC 1 cut(s) 268
BspCNI CTCAG 4 cut(s) 618, 652, 982, 1021
BspEI TCCGGA 1 cut(s) 280
BspFNI CGCG 1 cut(s) 93
BspMI ACCTGC 2 cut(s) 841, 1540
BspPI GGATC 5 cut(s) 159, 630, 775, 805, 1553
BspTNI GGTCTC 1 cut(s) 245
BsrGI TGTACA 1 cut(s) 1570
BsrI ACTGG 2 cut(s) 799, 1034
BssECI CCNNGG 3 cut(s) 784, 1448, 1608
BssMI GATC 8 cut(s) 151, 622, 780, 797, 906, 1120, 1385, 1558
BssNAI GTATAC 1 cut(s) 436
BssNI GRCGYC 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 1608
Bst1107I GTATAC 1 cut(s) 436
Bst2UI CCWGG 2 cut(s) 821, 1449
Bst4CI ACNGT 8 cut(s) 82, 385, 555, 638, 808, 827, 1353, 1633
BstACI GRCGYC 1 cut(s) 36
BstAUI TGTACA 1 cut(s) 1570
BstDEI CTNAG 7 cut(s) 626, 660, 969, 1008, 1124, 1215, 1426
BstDSI CCRYGG 1 cut(s) 1608
BstF5I GGATG 4 cut(s) 289, 484, 1247, 1408
BstFNI CGCG 1 cut(s) 93
BstKTI GATC 8 cut(s) 154, 625, 783, 800, 909, 1123, 1388, 1561
BstMAI GTCTC 5 cut(s) 245, 374, 591, 656, 1557
BstMBI GATC 8 cut(s) 151, 622, 780, 797, 906, 1120, 1385, 1558
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 2 cut(s) 49, 274
BstNI CCWGG 2 cut(s) 821, 1449
BstNSI RCATGY 1 cut(s) 1423
BstSCI CCNGG 4 cut(s) 443, 784, 819, 1447
BstSFI CTRYAG 2 cut(s) 78, 1113
BstSLI GKGCMC 1 cut(s) 1358
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 1454
BstV2I GAAGAC 1 cut(s) 1036
BstX2I RGATCY 3 cut(s) 622, 780, 1120
BstYI RGATCY 3 cut(s) 622, 780, 1120
BstZ17I GTATAC 1 cut(s) 436
BsuRI GGCC 1 cut(s) 268
BtgI CCRYGG 1 cut(s) 1608
BtgZI GCGATG 1 cut(s) 894
BtrI CACGTC 1 cut(s) 928
BtsCI GGATG 4 cut(s) 289, 484, 1247, 1408
BtsIMutI CAGTG 2 cut(s) 390, 643
BveI ACCTGC 2 cut(s) 841, 1540
CaiI CAGNNNCTG 2 cut(s) 659, 1448
CseI GACGC 1 cut(s) 44
Csp6I GTAC 5 cut(s) 166, 1079, 1423, 1571, 1614
CviAII CATG 7 cut(s) 698, 743, 1292, 1321, 1420, 1566, 1609
CviQI GTAC 5 cut(s) 166, 1079, 1423, 1571, 1614
DdeI CTNAG 7 cut(s) 626, 660, 969, 1008, 1124, 1215, 1426
DpnI GATC 8 cut(s) 153, 624, 782, 799, 908, 1122, 1387, 1560
DpnII GATC 8 cut(s) 151, 622, 780, 797, 906, 1120, 1385, 1558
DraI TTTAAA 1 cut(s) 231
DraIII CACNNNGTG 1 cut(s) 605
EciI GGCGGA 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 1608
Eco31I GGTCTC 1 cut(s) 245
Eco57I CTGAAG 2 cut(s) 435, 1244
Eco88I CYCGRG 1 cut(s) 588
EcoRII CCWGG 2 cut(s) 819, 1447
EcoT14I CCWWGG 1 cut(s) 1608
ErhI CCWWGG 1 cut(s) 1608
FaeI CATG 7 cut(s) 701, 746, 1295, 1324, 1423, 1569, 1612
FatI CATG 7 cut(s) 697, 742, 1291, 1320, 1419, 1565, 1608
FauI CCCGC 1 cut(s) 1161
FblI GTMKAC 1 cut(s) 435
Fnu4HI GCNGC 1 cut(s) 1443
FokI GGATG 4 cut(s) 296, 491, 1234, 1415
Fsp4HI GCNGC 1 cut(s) 1443
FspBI CTAG 6 cut(s) 105, 713, 917, 1104, 1596, 1617
GluI GCNGC 1 cut(s) 1443
GsuI CTGGAG 1 cut(s) 1051
HaeIII GGCC 1 cut(s) 268
HapII CCGG 4 cut(s) 44, 281, 444, 786
HgaI GACGC 1 cut(s) 44
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 7 cut(s) 701, 746, 1295, 1324, 1423, 1569, 1612
HinfI GANTC 9 cut(s) 207, 410, 419, 584, 719, 931, 967, 974, 1406
HpaII CCGG 4 cut(s) 44, 281, 444, 786
HphI GGTGA 1 cut(s) 440
Hpy166II GTNNAC 4 cut(s) 346, 436, 830, 1571
Hpy188I TCNGA 7 cut(s) 415, 496, 627, 1002, 1263, 1487, 1504
Hpy8I GTNNAC 4 cut(s) 346, 436, 830, 1571
Hpy99I CGWCG 2 cut(s) 62, 274
HpyAV CCTTC 4 cut(s) 668, 1077, 1294, 1507
HpyCH4III ACNGT 8 cut(s) 82, 385, 555, 638, 808, 827, 1353, 1633
HpyCH4IV ACGT 2 cut(s) 7, 927
HpyCH4V TGCA 9 cut(s) 467, 574, 836, 1211, 1442, 1535, 1580, 1602, 1637
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 274
HpyF3I CTNAG 7 cut(s) 626, 660, 969, 1008, 1124, 1215, 1426
HpySE526I ACGT 2 cut(s) 7, 927
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 7 cut(s) 701, 746, 1295, 1324, 1423, 1569, 1612
Kpn2I TCCGGA 1 cut(s) 280
Kzo9I GATC 8 cut(s) 151, 622, 780, 797, 906, 1120, 1385, 1558
LmnI GCTCC 1 cut(s) 1450
Lsp1109I GCAGC 1 cut(s) 1454
LweI GCATC 1 cut(s) 1220
MaeI CTAG 6 cut(s) 105, 713, 917, 1104, 1596, 1617
MaeII ACGT 2 cut(s) 7, 927
MaeIII GTNAC 6 cut(s) 3, 555, 632, 638, 923, 964
MalI GATC 8 cut(s) 153, 624, 782, 799, 908, 1122, 1387, 1560
MboI GATC 8 cut(s) 151, 622, 780, 797, 906, 1120, 1385, 1558
MfeI CAATTG 2 cut(s) 119, 468
MflI RGATCY 3 cut(s) 622, 780, 1120
MhlI GDGCHC 1 cut(s) 1358
MluCI AATT 6 cut(s) 119, 456, 468, 523, 578, 859
MlyI GAGTC 4 cut(s) 593, 728, 961, 1400
MmeI TCCRAC 3 cut(s) 44, 282, 1527
MroI TCCGGA 1 cut(s) 280
MseI TTAA 7 cut(s) 171, 230, 363, 803, 1148, 1347, 1521
MslI CAYNNNNRTG 2 cut(s) 173, 939
MspI CCGG 4 cut(s) 44, 281, 444, 786
MspR9I CCNGG 4 cut(s) 445, 786, 821, 1449
MunI CAATTG 2 cut(s) 119, 468
Mva1269I GAATGC 2 cut(s) 576, 1535
MvaI CCWGG 2 cut(s) 821, 1449
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 49, 274
NciI CCSGG 2 cut(s) 445, 786
NcoI CCATGG 1 cut(s) 1608
NdeII GATC 8 cut(s) 151, 622, 780, 797, 906, 1120, 1385, 1558
NlaIII CATG 7 cut(s) 701, 746, 1295, 1324, 1423, 1569, 1612
NmeAIII GCCGAG 1 cut(s) 1388
NmuCI GTSAC 5 cut(s) 555, 632, 638, 923, 964
NspI RCATGY 1 cut(s) 1423
OliI CACNNNNGTG 1 cut(s) 939
PaeR7I CTCGAG 1 cut(s) 588
PcsI WCGNNNNNNNCGW 1 cut(s) 193
PctI GAATGC 2 cut(s) 576, 1535
PfeI GAWTC 5 cut(s) 207, 410, 419, 931, 974
PkrI GCNGC 1 cut(s) 1444
PleI GAGTC 4 cut(s) 592, 727, 961, 1400
PpsI GAGTC 4 cut(s) 592, 727, 961, 1400
Psp6I CCWGG 2 cut(s) 819, 1447
PspGI CCWGG 2 cut(s) 819, 1447
PstNI CAGNNNCTG 2 cut(s) 659, 1448
PsuI RGATCY 3 cut(s) 622, 780, 1120
RsaI GTAC 5 cut(s) 167, 1080, 1424, 1572, 1615
RsaNI GTAC 5 cut(s) 166, 1079, 1423, 1571, 1614
RseI CAYNNNNRTG 2 cut(s) 173, 939
SaqAI TTAA 7 cut(s) 171, 230, 363, 803, 1148, 1347, 1521
SatI GCNGC 1 cut(s) 1443
Sau3AI GATC 8 cut(s) 151, 622, 780, 797, 906, 1120, 1385, 1558
SchI GAGTC 4 cut(s) 593, 728, 961, 1400
ScrFI CCNGG 4 cut(s) 445, 786, 821, 1449
SduI GDGCHC 1 cut(s) 1358
SfaNI GCATC 1 cut(s) 1220
SfcI CTRYAG 2 cut(s) 78, 1113
Sfr274I CTCGAG 1 cut(s) 588
SlaI CTCGAG 1 cut(s) 588
SmiMI CAYNNNNRTG 2 cut(s) 173, 939
SmlI CTYRAG 2 cut(s) 161, 588
SmoI CTYRAG 2 cut(s) 161, 588
SpeI ACTAGT 1 cut(s) 1616
Sse9I AATT 6 cut(s) 119, 456, 468, 523, 578, 859
SsiI CCGC 6 cut(s) 32, 93, 255, 1154, 1186, 1417
SspMI CTAG 6 cut(s) 105, 713, 917, 1104, 1596, 1617
StyD4I CCNGG 4 cut(s) 443, 784, 819, 1447
StyI CCWWGG 1 cut(s) 1608
TaaI ACNGT 8 cut(s) 82, 385, 555, 638, 808, 827, 1353, 1633
TaiI ACGT 2 cut(s) 10, 930
TaqI TCGA 4 cut(s) 510, 589, 717, 1310
TaqII GACCGA 1 cut(s) 1030
TasI AATT 6 cut(s) 119, 456, 468, 523, 578, 859
TatI WGTACW 4 cut(s) 165, 1078, 1422, 1570
TfiI GAWTC 5 cut(s) 207, 410, 419, 931, 974
Tru1I TTAA 7 cut(s) 171, 230, 363, 803, 1148, 1347, 1521
Tru9I TTAA 7 cut(s) 171, 230, 363, 803, 1148, 1347, 1521
TscAI CASTG 2 cut(s) 390, 643
TseFI GTSAC 5 cut(s) 555, 632, 638, 923, 964
TseI GCWGC 1 cut(s) 1442
Tsp45I GTSAC 5 cut(s) 555, 632, 638, 923, 964
TspDTI ATGAA 7 cut(s) 300, 353, 411, 468, 495, 897, 1539
TspGWI ACGGA 1 cut(s) 1214
TspRI CASTG 2 cut(s) 390, 643
XapI RAATTY 1 cut(s) 523
XceI RCATGY 1 cut(s) 1423
XhoI CTCGAG 1 cut(s) 588
XmiI GTMKAC 1 cut(s) 435
XspI CTAG 6 cut(s) 105, 713, 917, 1104, 1596, 1617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.