Methyl-CpG binding domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G63240 |
| fragaria_vesca | FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01911 FvH4_5g01911 |
| malus_domestica | MD06G1076800.v1.1 MD14G1098200.v1.1 |
| prunus_persica | Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 |
| pyrus_communis | pycom06g07430 pycom06g07440 pycom14g09640 |
| rosa_chinensis | RchiOBHm_Chr7g0198611 RchiOBHm_Chr7g0198661 |
| rosa_laevigata | RLG00000003850 RLG00000003857 |
| rosa_multiflora | Rmu_co8077932.1_g000001 Rmu_co8274787.1_g000001 Rmu_co8506873.1_g000001 Rmu_sc0000220.1_g000017 Rmu_sc0004229.1_g000004 |
| rosa_roxburghii | Rroxscaffold_3G00257550 Rroxscaffold_3G00257620 |
| rosa_rugosa | Rorug07G0048500 Rorug07G0049000 Rorug07G0049100 Rorug07G0049100 |
| rosa_samantha | Rh4BG123200 Rh7AG172000 Rh7AG172600 Rh7BG175400 Rh7BG176100 Rh7CG181500 Rh7CG182000 Rh7DG174500 Rh7DG174900 Rh7DG175200 |
| rosa_wichuraiana | Rw7G015090 Rw7G015150 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 4 cut(s) | 144, 456, 621, 1330 |
| Acc65I | GGTACC | 1 cut(s) | 202 |
| AccB1I | GGYRCC | 1 cut(s) | 202 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1925 |
| AccI | GTMKAC | 2 cut(s) | 81, 393 |
| AciI | CCGC | 3 cut(s) | 1583, 2136, 2214 |
| AclWI | GGATC | 2 cut(s) | 819, 1964 |
| AcoI | YGGCCR | 2 cut(s) | 1479, 1993 |
| AcsI | RAATTY | 6 cut(s) | 1250, 1348, 1525, 2011, 2245, 2323 |
| AcuI | CTGAAG | 2 cut(s) | 993, 2013 |
| AfaI | GTAC | 3 cut(s) | 204, 1486, 1627 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1555, 1777, 1925 |
| AflII | CTTAAG | 1 cut(s) | 1424 |
| AflIII | ACRYGT | 1 cut(s) | 1738 |
| AjiI | CACGTC | 1 cut(s) | 2202 |
| AjnI | CCWGG | 1 cut(s) | 715 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2354, 2386 |
| Alw21I | GWGCWC | 2 cut(s) | 1218, 2201 |
| Alw26I | GTCTC | 2 cut(s) | 656, 879 |
| AlwI | GGATC | 2 cut(s) | 819, 1964 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 173, 485 |
| Ama87I | CYCGRG | 3 cut(s) | 85, 397, 838 |
| AoxI | GGCC | 7 cut(s) | 72, 1307, 1479, 1993, 2149, 2227, 2305 |
| ApaI | GGGCCC | 1 cut(s) | 76 |
| ApoI | RAATTY | 6 cut(s) | 1250, 1348, 1525, 2011, 2245, 2323 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2065 |
| Asp718I | GGTACC | 1 cut(s) | 202 |
| AspS9I | GGNCC | 5 cut(s) | 72, 73, 701, 882, 1788 |
| AsuHPI | GGTGA | 2 cut(s) | 1092, 1373 |
| AvaI | CYCGRG | 3 cut(s) | 85, 397, 838 |
| AvaII | GGWCC | 3 cut(s) | 701, 882, 1788 |
| AxyI | CCTNAGG | 2 cut(s) | 1155, 1701 |
| BaeGI | GKGCMC | 1 cut(s) | 76 |
| BalI | TGGCCA | 2 cut(s) | 1481, 1995 |
| BanI | GGYRCC | 1 cut(s) | 202 |
| BanII | GRGCYC | 4 cut(s) | 76, 747, 1048, 1218 |
| BbsI | GAAGAC | 2 cut(s) | 325, 1434 |
| Bbv12I | GWGCWC | 2 cut(s) | 1218, 2201 |
| BbvCI | CCTCAGC | 1 cut(s) | 240 |
| BccI | CCATC | 6 cut(s) | 193, 299, 505, 611, 1057, 1553 |
| BciT130I | CCWGG | 1 cut(s) | 717 |
| BciVI | GTATCC | 1 cut(s) | 526 |
| BcoDI | GTCTC | 2 cut(s) | 656, 879 |
| BfaI | CTAG | 9 cut(s) | 77, 143, 963, 972, 1247, 1802, 1935, 2085, 2434 |
| BfmI | CTRYAG | 5 cut(s) | 390, 1323, 1378, 2106, 2262 |
| BfrI | CTTAAG | 1 cut(s) | 1424 |
| BfuAI | ACCTGC | 4 cut(s) | 144, 456, 621, 1330 |
| BfuI | GTATCC | 1 cut(s) | 526 |
| BglII | AGATCT | 1 cut(s) | 1012 |
| BlpI | GCTNAGC | 1 cut(s) | 1217 |
| BmcAI | AGTACT | 1 cut(s) | 1486 |
| Bme1390I | CCNGG | 1 cut(s) | 717 |
| Bme18I | GGWCC | 3 cut(s) | 701, 882, 1788 |
| BmeT110I | CYCGRG | 3 cut(s) | 85, 397, 838 |
| BmgBI | CACGTC | 1 cut(s) | 2202 |
| BmgT120I | GGNCC | 5 cut(s) | 72, 73, 701, 882, 1788 |
| BmiI | GGNNCC | 4 cut(s) | 74, 204, 1047, 1152 |
| BmrFI | CCNGG | 1 cut(s) | 717 |
| BmsI | GCATC | 6 cut(s) | 1037, 1078, 1106, 1183, 1583, 1756 |
| BpiI | GAAGAC | 2 cut(s) | 325, 1434 |
| Bpu10I | CCTNAGC | 3 cut(s) | 240, 1104, 1470 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1217 |
| BpuEI | CTTGAG | 2 cut(s) | 1607, 2170 |
| Bsa29I | ATCGAT | 1 cut(s) | 372 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1854 |
| BsaJI | CCNNGG | 7 cut(s) | 609, 715, 855, 1391, 1407, 1494, 2416 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1555, 1777, 1925 |
| Bse118I | RCCGGY | 1 cut(s) | 438 |
| Bse1I | ACTGG | 1 cut(s) | 1482 |
| Bse21I | CCTNAGG | 2 cut(s) | 1155, 1701 |
| Bse3DI | GCAATG | 1 cut(s) | 683 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1854 |
| BseBI | CCWGG | 1 cut(s) | 717 |
| BseCI | ATCGAT | 1 cut(s) | 372 |
| BseDI | CCNNGG | 7 cut(s) | 609, 715, 855, 1391, 1407, 1494, 2416 |
| BseGI | GGATG | 6 cut(s) | 1198, 1545, 1747, 1852, 2096, 2174 |
| BseJI | GATNNNNATC | 1 cut(s) | 1854 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1555, 1777, 1925 |
| BseMI | GCAATG | 1 cut(s) | 683 |
| BseNI | ACTGG | 1 cut(s) | 1482 |
| BseRI | GAGGAG | 2 cut(s) | 375, 1667 |
| BseSI | GKGCMC | 1 cut(s) | 76 |
| BseYI | CCCAGC | 5 cut(s) | 146, 458, 899, 1457, 1549 |
| BsgI | GTGCAG | 1 cut(s) | 237 |
| BshFI | GGCC | 7 cut(s) | 74, 1309, 1481, 1995, 2151, 2229, 2307 |
| BshNI | GGYRCC | 1 cut(s) | 202 |
| BshVI | ATCGAT | 1 cut(s) | 372 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1218, 2201 |
| BsiHKCI | CYCGRG | 3 cut(s) | 85, 397, 838 |
| BsiSI | CCGG | 2 cut(s) | 439, 2343 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1555, 1777, 1925 |
| BsmAI | GTCTC | 2 cut(s) | 656, 879 |
| BsmI | GAATGC | 4 cut(s) | 1221, 1256, 1811, 2018 |
| BsnI | GGCC | 7 cut(s) | 74, 1309, 1481, 1995, 2151, 2229, 2307 |
| BsoBI | CYCGRG | 3 cut(s) | 85, 397, 838 |
| Bsp120I | GGGCCC | 1 cut(s) | 72 |
| Bsp1286I | GDGCHC | 5 cut(s) | 76, 747, 1048, 1218, 2201 |
| Bsp143I | GATC | 4 cut(s) | 111, 824, 1012, 1969 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1217 |
| Bsp19I | CCATGG | 1 cut(s) | 2416 |
| BspACI | CCGC | 3 cut(s) | 1583, 2136, 2214 |
| BspANI | GGCC | 7 cut(s) | 74, 1309, 1481, 1995, 2151, 2229, 2307 |
| BspDI | ATCGAT | 1 cut(s) | 372 |
| BspLI | GGNNCC | 4 cut(s) | 74, 204, 1047, 1152 |
| BspMAI | CTGCAG | 3 cut(s) | 1327, 2110, 2266 |
| BspMI | ACCTGC | 4 cut(s) | 144, 456, 621, 1330 |
| BspPI | GGATC | 2 cut(s) | 819, 1964 |
| BspQI | GCTCTTC | 2 cut(s) | 376, 1680 |
| BspT107I | GGYRCC | 1 cut(s) | 202 |
| BspTI | CTTAAG | 1 cut(s) | 1424 |
| BsrDI | GCAATG | 1 cut(s) | 683 |
| BsrFI | RCCGGY | 1 cut(s) | 438 |
| BsrI | ACTGG | 1 cut(s) | 1482 |
| BssAI | RCCGGY | 1 cut(s) | 438 |
| BssECI | CCNNGG | 7 cut(s) | 609, 715, 855, 1391, 1407, 1494, 2416 |
| BssMI | GATC | 4 cut(s) | 111, 824, 1012, 1969 |
| BssT1I | CCWWGG | 3 cut(s) | 855, 1407, 2416 |
| Bst2UI | CCWGG | 1 cut(s) | 717 |
| Bst6I | CTCTTC | 2 cut(s) | 376, 1680 |
| BstAFI | CTTAAG | 1 cut(s) | 1424 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1610 |
| BstC8I | GCNNGC | 8 cut(s) | 1479, 1611, 1692, 2045, 2262, 2309, 2336, 2340 |
| BstDSI | CCRYGG | 1 cut(s) | 2416 |
| BstF5I | GGATG | 6 cut(s) | 1198, 1545, 1747, 1852, 2096, 2174 |
| BstKTI | GATC | 4 cut(s) | 114, 827, 1015, 1972 |
| BstMAI | GTCTC | 2 cut(s) | 656, 879 |
| BstMBI | GATC | 4 cut(s) | 111, 824, 1012, 1969 |
| BstNI | CCWGG | 1 cut(s) | 717 |
| BstNSI | RCATGY | 6 cut(s) | 589, 1694, 1742, 2047, 2125, 2281 |
| BstSCI | CCNGG | 1 cut(s) | 715 |
| BstSFI | CTRYAG | 5 cut(s) | 390, 1323, 1378, 2106, 2262 |
| BstSLI | GKGCMC | 1 cut(s) | 76 |
| BstV2I | GAAGAC | 2 cut(s) | 325, 1434 |
| BstX2I | RGATCY | 2 cut(s) | 824, 1012 |
| BstYI | RGATCY | 2 cut(s) | 824, 1012 |
| Bsu15I | ATCGAT | 1 cut(s) | 372 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1155, 1701 |
| BsuI | GTATCC | 1 cut(s) | 526 |
| BsuRI | GGCC | 7 cut(s) | 74, 1309, 1481, 1995, 2151, 2229, 2307 |
| BsuTUI | ATCGAT | 1 cut(s) | 372 |
| BtgI | CCRYGG | 1 cut(s) | 2416 |
| BtrI | CACGTC | 1 cut(s) | 2202 |
| BtsCI | GGATG | 6 cut(s) | 1198, 1545, 1747, 1852, 2096, 2174 |
| BtsI | GCAGTG | 2 cut(s) | 2062, 2390 |
| BtsIMutI | CAGTG | 3 cut(s) | 936, 2062, 2390 |
| BveI | ACCTGC | 4 cut(s) | 144, 456, 621, 1330 |
| Cac8I | GCNNGC | 8 cut(s) | 1479, 1611, 1692, 2045, 2262, 2309, 2336, 2340 |
| CaiI | CAGNNNCTG | 2 cut(s) | 173, 485 |
| Cfr10I | RCCGGY | 1 cut(s) | 438 |
| Cfr13I | GGNCC | 5 cut(s) | 72, 73, 701, 882, 1788 |
| ClaI | ATCGAT | 1 cut(s) | 372 |
| Csp6I | GTAC | 3 cut(s) | 203, 1485, 1626 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2038, 2073 |
| CviQI | GTAC | 3 cut(s) | 203, 1485, 1626 |
| DpnI | GATC | 4 cut(s) | 113, 826, 1014, 1971 |
| DpnII | GATC | 4 cut(s) | 111, 824, 1012, 1969 |
| DraI | TTTAAA | 1 cut(s) | 1089 |
| EaeI | YGGCCR | 2 cut(s) | 1479, 1993 |
| Eam1104I | CTCTTC | 2 cut(s) | 376, 1680 |
| EarI | CTCTTC | 2 cut(s) | 376, 1680 |
| Ecl136II | GAGCTC | 1 cut(s) | 1216 |
| Eco130I | CCWWGG | 3 cut(s) | 855, 1407, 2416 |
| Eco147I | AGGCCT | 1 cut(s) | 1309 |
| Eco24I | GRGCYC | 4 cut(s) | 76, 747, 1048, 1218 |
| Eco47I | GGWCC | 3 cut(s) | 701, 882, 1788 |
| Eco53kI | GAGCTC | 1 cut(s) | 1216 |
| Eco57I | CTGAAG | 2 cut(s) | 993, 2013 |
| Eco81I | CCTNAGG | 2 cut(s) | 1155, 1701 |
| Eco88I | CYCGRG | 3 cut(s) | 85, 397, 838 |
| EcoICRI | GAGCTC | 1 cut(s) | 1216 |
| EcoO109I | RGGNCCY | 3 cut(s) | 72, 73, 701 |
| EcoRI | GAATTC | 2 cut(s) | 2011, 2245 |
| EcoRII | CCWGG | 1 cut(s) | 715 |
| EcoT14I | CCWWGG | 3 cut(s) | 855, 1407, 2416 |
| EcoT38I | GRGCYC | 4 cut(s) | 76, 747, 1048, 1218 |
| ErhI | CCWWGG | 3 cut(s) | 855, 1407, 2416 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 327, 359, 1593, 1625, 1863, 1895 |
| FauI | CCCGC | 2 cut(s) | 2129, 2207 |
| FblI | GTMKAC | 2 cut(s) | 81, 393 |
| FokI | GGATG | 6 cut(s) | 1205, 1532, 1734, 1859, 2083, 2161 |
| FriOI | GRGCYC | 4 cut(s) | 76, 747, 1048, 1218 |
| FspBI | CTAG | 9 cut(s) | 77, 143, 963, 972, 1247, 1802, 1935, 2085, 2434 |
| GsaI | CCCAGC | 5 cut(s) | 150, 462, 903, 1461, 1553 |
| HaeIII | GGCC | 7 cut(s) | 74, 1309, 1481, 1995, 2151, 2229, 2307 |
| HapII | CCGG | 2 cut(s) | 439, 2343 |
| HincII | GTYRAC | 1 cut(s) | 2075 |
| HindII | GTYRAC | 1 cut(s) | 2075 |
| HindIII | AAGCTT | 2 cut(s) | 863, 1607 |
| HinfI | GANTC | 9 cut(s) | 83, 170, 395, 983, 1781, 1819, 2089, 2167, 2378 |
| HpaII | CCGG | 2 cut(s) | 439, 2343 |
| HphI | GGTGA | 2 cut(s) | 1092, 1373 |
| Hpy166II | GTNNAC | 3 cut(s) | 82, 394, 2075 |
| Hpy188III | TCNNGA | 8 cut(s) | 50, 992, 1682, 1703, 1751, 1816, 2031, 2187 |
| Hpy8I | GTNNAC | 3 cut(s) | 82, 394, 2075 |
| Hpy99I | CGWCG | 2 cut(s) | 129, 882 |
| HpyAV | CCTTC | 6 cut(s) | 665, 1669, 1726, 2037, 2103, 2181 |
| HpyCH4IV | ACGT | 2 cut(s) | 2115, 2201 |
| HpySE526I | ACGT | 2 cut(s) | 2115, 2201 |
| KpnI | GGTACC | 1 cut(s) | 206 |
| Kzo9I | GATC | 4 cut(s) | 111, 824, 1012, 1969 |
| LguI | GCTCTTC | 2 cut(s) | 376, 1680 |
| LmnI | GCTCC | 6 cut(s) | 150, 185, 462, 1051, 1159, 1654 |
| LweI | GCATC | 6 cut(s) | 1037, 1078, 1106, 1183, 1583, 1756 |
| MaeI | CTAG | 9 cut(s) | 77, 143, 963, 972, 1247, 1802, 1935, 2085, 2434 |
| MaeII | ACGT | 2 cut(s) | 2115, 2201 |
| MaeIII | GTNAC | 4 cut(s) | 324, 1063, 1862, 2157 |
| MalI | GATC | 4 cut(s) | 113, 826, 1014, 1971 |
| MboI | GATC | 4 cut(s) | 111, 824, 1012, 1969 |
| MfeI | CAATTG | 1 cut(s) | 2050 |
| MflI | RGATCY | 2 cut(s) | 824, 1012 |
| MhlI | GDGCHC | 5 cut(s) | 76, 747, 1048, 1218, 2201 |
| MlsI | TGGCCA | 2 cut(s) | 1481, 1995 |
| MluNI | TGGCCA | 2 cut(s) | 1481, 1995 |
| MlyI | GAGTC | 3 cut(s) | 77, 389, 1813 |
| MmeI | TCCRAC | 4 cut(s) | 138, 450, 676, 1815 |
| Mox20I | TGGCCA | 2 cut(s) | 1481, 1995 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2065 |
| MscI | TGGCCA | 2 cut(s) | 1481, 1995 |
| MseI | TTAA | 9 cut(s) | 297, 426, 561, 575, 792, 867, 1079, 1088, 1425 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2421 |
| Msp20I | TGGCCA | 2 cut(s) | 1481, 1995 |
| MspA1I | CMGCKG | 6 cut(s) | 239, 551, 1328, 1553, 2136, 2214 |
| MspCI | CTTAAG | 1 cut(s) | 1424 |
| MspI | CCGG | 2 cut(s) | 439, 2343 |
| MspR9I | CCNGG | 1 cut(s) | 717 |
| MunI | CAATTG | 1 cut(s) | 2050 |
| Mva1269I | GAATGC | 4 cut(s) | 1221, 1256, 1811, 2018 |
| MvaI | CCWGG | 1 cut(s) | 717 |
| NcoI | CCATGG | 1 cut(s) | 2416 |
| NdeII | GATC | 4 cut(s) | 111, 824, 1012, 1969 |
| NlaIV | GGNNCC | 4 cut(s) | 74, 204, 1047, 1152 |
| NmuCI | GTSAC | 1 cut(s) | 324 |
| NspI | RCATGY | 6 cut(s) | 589, 1694, 1742, 2047, 2125, 2281 |
| PaeI | GCATGC | 2 cut(s) | 1694, 2047 |
| PaeR7I | CTCGAG | 3 cut(s) | 85, 397, 838 |
| PceI | AGGCCT | 1 cut(s) | 1309 |
| PciI | ACATGT | 1 cut(s) | 1738 |
| PciSI | GCTCTTC | 2 cut(s) | 376, 1680 |
| PctI | GAATGC | 4 cut(s) | 1221, 1256, 1811, 2018 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2065 |
| PfeI | GAWTC | 6 cut(s) | 170, 983, 1781, 2089, 2167, 2378 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1925 |
| PleI | GAGTC | 3 cut(s) | 77, 389, 1813 |
| PpsI | GAGTC | 3 cut(s) | 77, 389, 1813 |
| PpuMI | RGGWCCY | 1 cut(s) | 701 |
| PscI | ACATGT | 1 cut(s) | 1738 |
| Psp124BI | GAGCTC | 1 cut(s) | 1218 |
| Psp5II | RGGWCCY | 1 cut(s) | 701 |
| Psp6I | CCWGG | 1 cut(s) | 715 |
| PspFI | CCCAGC | 5 cut(s) | 146, 458, 899, 1457, 1549 |
| PspGI | CCWGG | 1 cut(s) | 715 |
| PspN4I | GGNNCC | 4 cut(s) | 74, 204, 1047, 1152 |
| PspOMI | GGGCCC | 1 cut(s) | 72 |
| PspPI | GGNCC | 5 cut(s) | 72, 73, 701, 882, 1788 |
| PspPPI | RGGWCCY | 1 cut(s) | 701 |
| PspXI | VCTCGAGB | 3 cut(s) | 85, 397, 838 |
| PstI | CTGCAG | 3 cut(s) | 1327, 2110, 2266 |
| PstNI | CAGNNNCTG | 2 cut(s) | 173, 485 |
| PsuI | RGATCY | 2 cut(s) | 824, 1012 |
| PvuII | CAGCTG | 4 cut(s) | 239, 551, 1328, 1553 |
| RsaI | GTAC | 3 cut(s) | 204, 1486, 1627 |
| RsaNI | GTAC | 3 cut(s) | 203, 1485, 1626 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2421 |
| SacI | GAGCTC | 1 cut(s) | 1218 |
| SapI | GCTCTTC | 2 cut(s) | 376, 1680 |
| SaqAI | TTAA | 9 cut(s) | 297, 426, 561, 575, 792, 867, 1079, 1088, 1425 |
| Sau3AI | GATC | 4 cut(s) | 111, 824, 1012, 1969 |
| Sau96I | GGNCC | 5 cut(s) | 72, 73, 701, 882, 1788 |
| SbfI | CCTGCAGG | 2 cut(s) | 2110, 2266 |
| ScaI | AGTACT | 1 cut(s) | 1486 |
| SchI | GAGTC | 3 cut(s) | 77, 389, 1813 |
| ScrFI | CCNGG | 1 cut(s) | 717 |
| SdaI | CCTGCAGG | 2 cut(s) | 2110, 2266 |
| SduI | GDGCHC | 5 cut(s) | 76, 747, 1048, 1218, 2201 |
| SfaNI | GCATC | 6 cut(s) | 1037, 1078, 1106, 1183, 1583, 1756 |
| SfcI | CTRYAG | 5 cut(s) | 390, 1323, 1378, 2106, 2262 |
| Sfr274I | CTCGAG | 3 cut(s) | 85, 397, 838 |
| SinI | GGWCC | 3 cut(s) | 701, 882, 1788 |
| SlaI | CTCGAG | 3 cut(s) | 85, 397, 838 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2421 |
| SmlI | CTYRAG | 6 cut(s) | 85, 397, 838, 1424, 1586, 2185 |
| SmoI | CTYRAG | 6 cut(s) | 85, 397, 838, 1424, 1586, 2185 |
| SphI | GCATGC | 2 cut(s) | 1694, 2047 |
| Sse8387I | CCTGCAGG | 2 cut(s) | 2110, 2266 |
| SseBI | AGGCCT | 1 cut(s) | 1309 |
| SsiI | CCGC | 3 cut(s) | 1583, 2136, 2214 |
| SspI | AATATT | 1 cut(s) | 1287 |
| SspMI | CTAG | 9 cut(s) | 77, 143, 963, 972, 1247, 1802, 1935, 2085, 2434 |
| SstI | GAGCTC | 1 cut(s) | 1218 |
| StuI | AGGCCT | 1 cut(s) | 1309 |
| StyD4I | CCNGG | 1 cut(s) | 715 |
| StyI | CCWWGG | 3 cut(s) | 855, 1407, 2416 |
| TaiI | ACGT | 2 cut(s) | 2118, 2204 |
| TaqI | TCGA | 7 cut(s) | 86, 233, 372, 398, 545, 839, 2360 |
| TaqII | GACCGA | 2 cut(s) | 623, 870 |
| TatI | WGTACW | 2 cut(s) | 1484, 1625 |
| TauI | GCSGC | 1 cut(s) | 1585 |
| TfiI | GAWTC | 6 cut(s) | 170, 983, 1781, 2089, 2167, 2378 |
| Tru1I | TTAA | 9 cut(s) | 297, 426, 561, 575, 792, 867, 1079, 1088, 1425 |
| Tru9I | TTAA | 9 cut(s) | 297, 426, 561, 575, 792, 867, 1079, 1088, 1425 |
| TscAI | CASTG | 3 cut(s) | 943, 2062, 2390 |
| TseFI | GTSAC | 1 cut(s) | 324 |
| Tsp45I | GTSAC | 1 cut(s) | 324 |
| TspGWI | ACGGA | 1 cut(s) | 1793 |
| TspRI | CASTG | 3 cut(s) | 943, 2062, 2390 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1925 |
| Vha464I | CTTAAG | 1 cut(s) | 1424 |
| VpaK11BI | GGWCC | 3 cut(s) | 701, 882, 1788 |
| XapI | RAATTY | 6 cut(s) | 1250, 1348, 1525, 2011, 2245, 2323 |
| XceI | RCATGY | 6 cut(s) | 589, 1694, 1742, 2047, 2125, 2281 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1552 |
| XhoI | CTCGAG | 3 cut(s) | 85, 397, 838 |
| XmiI | GTMKAC | 2 cut(s) | 81, 393 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2065 |
| XspI | CTAG | 9 cut(s) | 77, 143, 963, 972, 1247, 1802, 1935, 2085, 2434 |
| ZrmI | AGTACT | 1 cut(s) | 1486 |