Methyl-CpG binding domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G63240 |
| fragaria_vesca | FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01911 FvH4_5g01911 |
| malus_domestica | MD06G1076800.v1.1 MD14G1098200.v1.1 |
| prunus_persica | Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 |
| pyrus_communis | pycom06g07430 pycom06g07440 pycom14g09640 |
| rosa_chinensis | RchiOBHm_Chr7g0198611 RchiOBHm_Chr7g0198661 |
| rosa_laevigata | RLG00000003850 RLG00000003857 |
| rosa_multiflora | Rmu_co8077932.1_g000001 Rmu_co8274787.1_g000001 Rmu_co8506873.1_g000001 Rmu_sc0000220.1_g000017 Rmu_sc0004229.1_g000004 |
| rosa_roxburghii | Rroxscaffold_3G00257550 Rroxscaffold_3G00257620 |
| rosa_rugosa | Rorug07G0048500 Rorug07G0049000 Rorug07G0049100 Rorug07G0049100 |
| rosa_samantha | Rh4BG123200 Rh7AG172000 Rh7AG172600 Rh7BG175400 Rh7BG176100 Rh7CG181500 Rh7CG182000 Rh7DG174500 Rh7DG174900 Rh7DG175200 |
| rosa_wichuraiana | Rw7G015090 Rw7G015150 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 5 cut(s) | 1254, 1282, 1387, 1690, 2710 |
| Acc65I | GGTACC | 1 cut(s) | 889 |
| AccB1I | GGYRCC | 1 cut(s) | 889 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 273, 617, 2288 |
| AccBSI | CCGCTC | 1 cut(s) | 633 |
| AccII | CGCG | 1 cut(s) | 295 |
| AciI | CCGC | 5 cut(s) | 33, 631, 840, 2730, 2733 |
| AclWI | GGATC | 3 cut(s) | 335, 602, 1082 |
| AcsI | RAATTY | 7 cut(s) | 216, 779, 1610, 1967, 2038, 2374, 2686 |
| AcuI | CTGAAG | 6 cut(s) | 1047, 1365, 1968, 2376, 2454, 2532 |
| AfaI | GTAC | 2 cut(s) | 891, 1987 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 39, 273, 617, 1952, 2140, 2288, 2759 |
| AflII | CTTAAG | 1 cut(s) | 1166 |
| AgeI | ACCGGT | 1 cut(s) | 68 |
| AjnI | CCWGG | 3 cut(s) | 797, 936, 1090 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1088, 1120, 2362, 2394 |
| Alw21I | GWGCWC | 3 cut(s) | 17, 710, 1867 |
| Alw26I | GTCTC | 4 cut(s) | 585, 656, 1955, 2757 |
| Alw44I | GTGCAC | 1 cut(s) | 706 |
| AlwI | GGATC | 3 cut(s) | 335, 602, 1082 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 860 |
| Ama87I | CYCGRG | 1 cut(s) | 1213 |
| AoxI | GGCC | 4 cut(s) | 1955, 2356, 2658, 2668 |
| ApaLI | GTGCAC | 1 cut(s) | 706 |
| ApoI | RAATTY | 7 cut(s) | 216, 779, 1610, 1967, 2038, 2374, 2686 |
| AseI | ATTAAT | 1 cut(s) | 729 |
| AsiGI | ACCGGT | 1 cut(s) | 68 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 113, 216, 1552 |
| Asp718I | GGTACC | 1 cut(s) | 889 |
| AspLEI | GCGC | 3 cut(s) | 141, 408, 481 |
| AspS9I | GGNCC | 3 cut(s) | 1887, 1955, 2658 |
| AsuHPI | GGTGA | 3 cut(s) | 298, 787, 2286 |
| AsuII | TTCGAA | 1 cut(s) | 1870 |
| AvaI | CYCGRG | 1 cut(s) | 1213 |
| AvaII | GGWCC | 1 cut(s) | 1887 |
| BaeGI | GKGCMC | 1 cut(s) | 710 |
| BanI | GGYRCC | 1 cut(s) | 889 |
| BanII | GRGCYC | 2 cut(s) | 17, 1867 |
| BbsI | GAAGAC | 4 cut(s) | 71, 476, 1251, 2055 |
| Bbv12I | GWGCWC | 3 cut(s) | 17, 710, 1867 |
| BbvCI | CCTCAGC | 1 cut(s) | 177 |
| BccI | CCATC | 7 cut(s) | 544, 763, 1171, 1349, 1720, 1913, 2601 |
| BceAI | ACGGC | 1 cut(s) | 1826 |
| BciT130I | CCWGG | 3 cut(s) | 799, 938, 1092 |
| BcoDI | GTCTC | 4 cut(s) | 585, 656, 1955, 2757 |
| BfaI | CTAG | 3 cut(s) | 1607, 2165, 2797 |
| BfmI | CTRYAG | 6 cut(s) | 1683, 1697, 1738, 1995, 2625, 2703 |
| BfrI | CTTAAG | 1 cut(s) | 1166 |
| BfuAI | ACCTGC | 5 cut(s) | 1254, 1282, 1387, 1690, 2710 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 25, 41 |
| Bme1390I | CCNGG | 3 cut(s) | 799, 938, 1092 |
| Bme18I | GGWCC | 1 cut(s) | 1887 |
| BmeT110I | CYCGRG | 1 cut(s) | 1213 |
| BmgT120I | GGNCC | 3 cut(s) | 1887, 1955, 2658 |
| BmiI | GGNNCC | 4 cut(s) | 29, 891, 1512, 2659 |
| BmrFI | CCNGG | 3 cut(s) | 799, 938, 1092 |
| BmrI | ACTGGG | 1 cut(s) | 114 |
| BmsI | GCATC | 6 cut(s) | 443, 1357, 1375, 1418, 1479, 1943 |
| BmuI | ACTGGG | 1 cut(s) | 114 |
| BpiI | GAAGAC | 4 cut(s) | 71, 476, 1251, 2055 |
| BpmI | CTGGAG | 1 cut(s) | 687 |
| Bpu10I | CCTNAGC | 3 cut(s) | 177, 1830, 2758 |
| Bpu14I | TTCGAA | 1 cut(s) | 1870 |
| BpuEI | CTTGAG | 1 cut(s) | 2049 |
| Bsa29I | ATCGAT | 2 cut(s) | 1798, 2681 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1389 |
| BsaI | GGTCTC | 1 cut(s) | 585 |
| BsaJI | CCNNGG | 2 cut(s) | 267, 1091 |
| BsaWI | WCCGGW | 1 cut(s) | 68 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 897, 927 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 39, 273, 617, 1952, 2140, 2288, 2759 |
| Bse118I | RCCGGY | 3 cut(s) | 35, 68, 2660 |
| Bse1I | ACTGG | 9 cut(s) | 29, 109, 307, 611, 670, 1311, 1854, 1885, 1890 |
| Bse3DI | GCAATG | 3 cut(s) | 1058, 1195, 2425 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1389 |
| BseBI | CCWGG | 3 cut(s) | 799, 938, 1092 |
| BseCI | ATCGAT | 2 cut(s) | 1798, 2681 |
| BseDI | CCNNGG | 2 cut(s) | 267, 1091 |
| BseGI | GGATG | 4 cut(s) | 133, 1494, 1905, 2215 |
| BseJI | GATNNNNATC | 1 cut(s) | 1389 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 39, 273, 617, 1952, 2140, 2288, 2759 |
| BseMI | GCAATG | 3 cut(s) | 1058, 1195, 2425 |
| BseMII | CTCAG | 8 cut(s) | 191, 222, 1548, 1608, 1821, 1952, 2082, 2339 |
| BseNI | ACTGG | 9 cut(s) | 29, 109, 307, 611, 670, 1311, 1854, 1885, 1890 |
| BseRI | GAGGAG | 1 cut(s) | 1481 |
| BseSI | GKGCMC | 1 cut(s) | 710 |
| BseYI | CCCAGC | 5 cut(s) | 39, 1274, 1817, 1952, 2297 |
| BsgI | GTGCAG | 2 cut(s) | 80, 176 |
| Bsh1236I | CGCG | 1 cut(s) | 295 |
| Bsh1285I | CGRYCG | 1 cut(s) | 73 |
| BshFI | GGCC | 4 cut(s) | 1957, 2358, 2660, 2670 |
| BshNI | GGYRCC | 1 cut(s) | 889 |
| BshTI | ACCGGT | 1 cut(s) | 68 |
| BshVI | ATCGAT | 2 cut(s) | 1798, 2681 |
| BsiEI | CGRYCG | 1 cut(s) | 73 |
| BsiHKAI | GWGCWC | 3 cut(s) | 17, 710, 1867 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1213 |
| BsiSI | CCGG | 4 cut(s) | 20, 36, 69, 2661 |
| BslFI | GGGAC | 1 cut(s) | 960 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 39, 273, 617, 1952, 2140, 2288, 2759 |
| BsmAI | GTCTC | 4 cut(s) | 585, 656, 1955, 2757 |
| BsmBI | CGTCTC | 1 cut(s) | 1955 |
| BsmFI | GGGAC | 1 cut(s) | 960 |
| BsmI | GAATGC | 2 cut(s) | 1616, 2174 |
| BsnI | GGCC | 4 cut(s) | 1957, 2358, 2660, 2670 |
| Bso31I | GGTCTC | 1 cut(s) | 585 |
| BsoBI | CYCGRG | 1 cut(s) | 1213 |
| Bsp119I | TTCGAA | 1 cut(s) | 1870 |
| Bsp1286I | GDGCHC | 3 cut(s) | 17, 710, 1867 |
| Bsp143I | GATC | 6 cut(s) | 340, 555, 607, 1087, 1390, 1799 |
| BspACI | CCGC | 5 cut(s) | 33, 631, 840, 2730, 2733 |
| BspANI | GGCC | 4 cut(s) | 1957, 2358, 2660, 2670 |
| BspCNI | CTCAG | 8 cut(s) | 190, 221, 1549, 1607, 1822, 1951, 2083, 2338 |
| BspDI | ATCGAT | 2 cut(s) | 1798, 2681 |
| BspFNI | CGCG | 1 cut(s) | 295 |
| BspLI | GGNNCC | 4 cut(s) | 29, 891, 1512, 2659 |
| BspMAI | CTGCAG | 5 cut(s) | 1687, 1701, 1742, 2629, 2707 |
| BspMI | ACCTGC | 5 cut(s) | 1254, 1282, 1387, 1690, 2710 |
| BspPI | GGATC | 3 cut(s) | 335, 602, 1082 |
| BspQI | GCTCTTC | 2 cut(s) | 1329, 1872 |
| BspT104I | TTCGAA | 1 cut(s) | 1870 |
| BspT107I | GGYRCC | 1 cut(s) | 889 |
| BspTI | CTTAAG | 1 cut(s) | 1166 |
| BspTNI | GGTCTC | 1 cut(s) | 585 |
| BsrBI | CCGCTC | 1 cut(s) | 633 |
| BsrDI | GCAATG | 3 cut(s) | 1058, 1195, 2425 |
| BsrFI | RCCGGY | 3 cut(s) | 35, 68, 2660 |
| BsrI | ACTGG | 9 cut(s) | 29, 109, 307, 611, 670, 1311, 1854, 1885, 1890 |
| BssAI | RCCGGY | 3 cut(s) | 35, 68, 2660 |
| BssECI | CCNNGG | 2 cut(s) | 267, 1091 |
| BssMI | GATC | 6 cut(s) | 340, 555, 607, 1087, 1390, 1799 |
| BssT1I | CCWWGG | 1 cut(s) | 267 |
| Bst2UI | CCWGG | 3 cut(s) | 799, 938, 1092 |
| Bst6I | CTCTTC | 3 cut(s) | 583, 1329, 1872 |
| BstAFI | CTTAAG | 1 cut(s) | 1166 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 414 |
| BstBI | TTCGAA | 1 cut(s) | 1870 |
| BstC8I | GCNNGC | 5 cut(s) | 17, 37, 157, 1815, 2625 |
| BstEII | GGTNACC | 1 cut(s) | 261 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2757 |
| BstF5I | GGATG | 4 cut(s) | 133, 1494, 1905, 2215 |
| BstFNI | CGCG | 1 cut(s) | 295 |
| BstHHI | GCGC | 3 cut(s) | 141, 408, 481 |
| BstKTI | GATC | 6 cut(s) | 343, 558, 610, 1090, 1393, 1802 |
| BstMAI | GTCTC | 4 cut(s) | 585, 656, 1955, 2757 |
| BstMBI | GATC | 6 cut(s) | 340, 555, 607, 1087, 1390, 1799 |
| BstMCI | CGRYCG | 1 cut(s) | 73 |
| BstNI | CCWGG | 3 cut(s) | 799, 938, 1092 |
| BstNSI | RCATGY | 5 cut(s) | 314, 686, 2410, 2488, 2566 |
| BstPI | GGTNACC | 1 cut(s) | 261 |
| BstSCI | CCNGG | 3 cut(s) | 797, 936, 1090 |
| BstSFI | CTRYAG | 6 cut(s) | 1683, 1697, 1738, 1995, 2625, 2703 |
| BstSLI | GKGCMC | 1 cut(s) | 710 |
| BstUI | CGCG | 1 cut(s) | 295 |
| BstV2I | GAAGAC | 4 cut(s) | 71, 476, 1251, 2055 |
| BstX2I | RGATCY | 2 cut(s) | 607, 1087 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 543, 985 |
| BstYI | RGATCY | 2 cut(s) | 607, 1087 |
| Bsu15I | ATCGAT | 2 cut(s) | 1798, 2681 |
| BsuRI | GGCC | 4 cut(s) | 1957, 2358, 2660, 2670 |
| BsuTUI | ATCGAT | 2 cut(s) | 1798, 2681 |
| BtsCI | GGATG | 4 cut(s) | 133, 1494, 1905, 2215 |
| BtsI | GCAGTG | 1 cut(s) | 2659 |
| BtsIMutI | CAGTG | 5 cut(s) | 622, 894, 1318, 1861, 2659 |
| BveI | ACCTGC | 5 cut(s) | 1254, 1282, 1387, 1690, 2710 |
| Cac8I | GCNNGC | 5 cut(s) | 17, 37, 157, 1815, 2625 |
| CaiI | CAGNNNCTG | 1 cut(s) | 860 |
| CfoI | GCGC | 3 cut(s) | 141, 408, 481 |
| Cfr10I | RCCGGY | 3 cut(s) | 35, 68, 2660 |
| Cfr13I | GGNCC | 3 cut(s) | 1887, 1955, 2658 |
| ClaI | ATCGAT | 2 cut(s) | 1798, 2681 |
| CseI | GACGC | 1 cut(s) | 2342 |
| Csp6I | GTAC | 2 cut(s) | 890, 1986 |
| CspAI | ACCGGT | 1 cut(s) | 68 |
| CviQI | GTAC | 2 cut(s) | 890, 1986 |
| DpnI | GATC | 6 cut(s) | 342, 557, 609, 1089, 1392, 1801 |
| DpnII | GATC | 6 cut(s) | 340, 555, 607, 1087, 1390, 1799 |
| DraI | TTTAAA | 1 cut(s) | 691 |
| Eam1104I | CTCTTC | 3 cut(s) | 583, 1329, 1872 |
| EarI | CTCTTC | 3 cut(s) | 583, 1329, 1872 |
| Ecl136II | GAGCTC | 2 cut(s) | 15, 1865 |
| Eco130I | CCWWGG | 1 cut(s) | 267 |
| Eco24I | GRGCYC | 2 cut(s) | 17, 1867 |
| Eco31I | GGTCTC | 1 cut(s) | 585 |
| Eco47I | GGWCC | 1 cut(s) | 1887 |
| Eco53kI | GAGCTC | 2 cut(s) | 15, 1865 |
| Eco57I | CTGAAG | 6 cut(s) | 1047, 1365, 1968, 2376, 2454, 2532 |
| Eco88I | CYCGRG | 1 cut(s) | 1213 |
| Eco91I | GGTNACC | 1 cut(s) | 261 |
| EcoICRI | GAGCTC | 2 cut(s) | 15, 1865 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2757 |
| EcoO65I | GGTNACC | 1 cut(s) | 261 |
| EcoRI | GAATTC | 2 cut(s) | 2374, 2686 |
| EcoRII | CCWGG | 3 cut(s) | 797, 936, 1090 |
| EcoT14I | CCWWGG | 1 cut(s) | 267 |
| EcoT22I | ATGCAT | 2 cut(s) | 458, 654 |
| EcoT38I | GRGCYC | 2 cut(s) | 17, 1867 |
| ErhI | CCWWGG | 1 cut(s) | 267 |
| Esp3I | CGTCTC | 1 cut(s) | 1955 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 101, 133 |
| FaqI | GGGAC | 1 cut(s) | 960 |
| FauI | CCCGC | 2 cut(s) | 40, 2726 |
| FokI | GGATG | 4 cut(s) | 140, 1501, 1892, 2222 |
| FriOI | GRGCYC | 2 cut(s) | 17, 1867 |
| FspBI | CTAG | 3 cut(s) | 1607, 2165, 2797 |
| GlaI | GCGC | 3 cut(s) | 140, 407, 480 |
| GsaI | CCCAGC | 5 cut(s) | 43, 1278, 1821, 1956, 2301 |
| GsuI | CTGGAG | 1 cut(s) | 687 |
| HaeIII | GGCC | 4 cut(s) | 1957, 2358, 2660, 2670 |
| HapII | CCGG | 4 cut(s) | 20, 36, 69, 2661 |
| HgaI | GACGC | 1 cut(s) | 2342 |
| HhaI | GCGC | 3 cut(s) | 141, 408, 481 |
| Hin6I | GCGC | 3 cut(s) | 139, 406, 479 |
| HinP1I | GCGC | 3 cut(s) | 139, 406, 479 |
| HincII | GTYRAC | 2 cut(s) | 1440, 1759 |
| HindII | GTYRAC | 2 cut(s) | 1440, 1759 |
| HindIII | AAGCTT | 1 cut(s) | 1238 |
| HinfI | GANTC | 9 cut(s) | 1129, 1553, 2110, 2144, 2182, 2452, 2530, 2608, 2741 |
| HpaI | GTTAAC | 1 cut(s) | 1759 |
| HpaII | CCGG | 4 cut(s) | 20, 36, 69, 2661 |
| HphI | GGTGA | 3 cut(s) | 298, 787, 2286 |
| Hpy166II | GTNNAC | 8 cut(s) | 238, 442, 546, 708, 1316, 1440, 1759, 1859 |
| Hpy188I | TCNGA | 9 cut(s) | 211, 832, 1196, 1384, 1414, 1558, 1597, 1677, 2155 |
| Hpy8I | GTNNAC | 8 cut(s) | 238, 442, 546, 708, 1316, 1440, 1759, 1859 |
| Hpy99I | CGWCG | 1 cut(s) | 1257 |
| HpyCH4IV | ACGT | 2 cut(s) | 1436, 2712 |
| HpySE526I | ACGT | 2 cut(s) | 1436, 2712 |
| HspAI | GCGC | 3 cut(s) | 139, 406, 479 |
| KpnI | GGTACC | 1 cut(s) | 893 |
| KroI | GCCGGC | 1 cut(s) | 35 |
| KroNI | GCCGGC | 1 cut(s) | 37 |
| KspAI | GTTAAC | 1 cut(s) | 1759 |
| Kzo9I | GATC | 6 cut(s) | 340, 555, 607, 1087, 1390, 1799 |
| LguI | GCTCTTC | 2 cut(s) | 1329, 1872 |
| LmnI | GCTCC | 3 cut(s) | 33, 638, 872 |
| LweI | GCATC | 6 cut(s) | 443, 1357, 1375, 1418, 1479, 1943 |
| MaeI | CTAG | 3 cut(s) | 1607, 2165, 2797 |
| MaeII | ACGT | 2 cut(s) | 1436, 2712 |
| MaeIII | GTNAC | 5 cut(s) | 261, 332, 740, 793, 2364 |
| MalI | GATC | 6 cut(s) | 342, 557, 609, 1089, 1392, 1801 |
| MbiI | CCGCTC | 1 cut(s) | 633 |
| MboI | GATC | 6 cut(s) | 340, 555, 607, 1087, 1390, 1799 |
| MflI | RGATCY | 2 cut(s) | 607, 1087 |
| MhlI | GDGCHC | 3 cut(s) | 17, 710, 1867 |
| MlyI | GAGTC | 2 cut(s) | 1123, 2176 |
| MmeI | TCCRAC | 3 cut(s) | 254, 295, 894 |
| Mph1103I | ATGCAT | 2 cut(s) | 458, 654 |
| MroNI | GCCGGC | 1 cut(s) | 35 |
| MroXI | GAANNNNTTC | 3 cut(s) | 113, 216, 1552 |
| MseI | TTAA | 8 cut(s) | 564, 690, 729, 783, 1167, 1242, 1758, 1785 |
| MslI | CAYNNNNRTG | 1 cut(s) | 541 |
| MspA1I | CMGCKG | 3 cut(s) | 926, 1688, 1942 |
| MspCI | CTTAAG | 1 cut(s) | 1166 |
| MspI | CCGG | 4 cut(s) | 20, 36, 69, 2661 |
| MspR9I | CCNGG | 3 cut(s) | 799, 938, 1092 |
| Mva1269I | GAATGC | 2 cut(s) | 1616, 2174 |
| MvaI | CCWGG | 3 cut(s) | 799, 938, 1092 |
| MvnI | CGCG | 1 cut(s) | 295 |
| NaeI | GCCGGC | 1 cut(s) | 37 |
| NdeII | GATC | 6 cut(s) | 340, 555, 607, 1087, 1390, 1799 |
| NgoMIV | GCCGGC | 1 cut(s) | 35 |
| NlaIV | GGNNCC | 4 cut(s) | 29, 891, 1512, 2659 |
| NmuCI | GTSAC | 2 cut(s) | 740, 793 |
| NsiI | ATGCAT | 2 cut(s) | 458, 654 |
| NspI | RCATGY | 5 cut(s) | 314, 686, 2410, 2488, 2566 |
| NspV | TTCGAA | 1 cut(s) | 1870 |
| PaeR7I | CTCGAG | 1 cut(s) | 1213 |
| PciSI | GCTCTTC | 2 cut(s) | 1329, 1872 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1867 |
| PctI | GAATGC | 2 cut(s) | 1616, 2174 |
| PdiI | GCCGGC | 1 cut(s) | 37 |
| PdmI | GAANNNNTTC | 3 cut(s) | 113, 216, 1552 |
| PfeI | GAWTC | 7 cut(s) | 1553, 2110, 2144, 2452, 2530, 2608, 2741 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 273, 617, 2288 |
| PfoI | TCCNGGA | 1 cut(s) | 936 |
| PinAI | ACCGGT | 1 cut(s) | 68 |
| PleI | GAGTC | 2 cut(s) | 1123, 2176 |
| PpsI | GAGTC | 2 cut(s) | 1123, 2176 |
| PshBI | ATTAAT | 1 cut(s) | 729 |
| Psp124BI | GAGCTC | 2 cut(s) | 17, 1867 |
| Psp6I | CCWGG | 3 cut(s) | 797, 936, 1090 |
| PspEI | GGTNACC | 1 cut(s) | 261 |
| PspFI | CCCAGC | 5 cut(s) | 39, 1274, 1817, 1952, 2297 |
| PspGI | CCWGG | 3 cut(s) | 797, 936, 1090 |
| PspN4I | GGNNCC | 4 cut(s) | 29, 891, 1512, 2659 |
| PspPI | GGNCC | 3 cut(s) | 1887, 1955, 2658 |
| PspXI | VCTCGAGB | 1 cut(s) | 1213 |
| PstI | CTGCAG | 5 cut(s) | 1687, 1701, 1742, 2629, 2707 |
| PstNI | CAGNNNCTG | 1 cut(s) | 860 |
| PsuI | RGATCY | 2 cut(s) | 607, 1087 |
| PvuII | CAGCTG | 3 cut(s) | 926, 1688, 1942 |
| RsaI | GTAC | 2 cut(s) | 891, 1987 |
| RsaNI | GTAC | 2 cut(s) | 890, 1986 |
| RseI | CAYNNNNRTG | 1 cut(s) | 541 |
| SacI | GAGCTC | 2 cut(s) | 17, 1867 |
| SapI | GCTCTTC | 2 cut(s) | 1329, 1872 |
| SaqAI | TTAA | 8 cut(s) | 564, 690, 729, 783, 1167, 1242, 1758, 1785 |
| Sau3AI | GATC | 6 cut(s) | 340, 555, 607, 1087, 1390, 1799 |
| Sau96I | GGNCC | 3 cut(s) | 1887, 1955, 2658 |
| SbfI | CCTGCAGG | 2 cut(s) | 2629, 2707 |
| SchI | GAGTC | 2 cut(s) | 1123, 2176 |
| ScrFI | CCNGG | 3 cut(s) | 799, 938, 1092 |
| SdaI | CCTGCAGG | 2 cut(s) | 2629, 2707 |
| SduI | GDGCHC | 3 cut(s) | 17, 710, 1867 |
| SfaNI | GCATC | 6 cut(s) | 443, 1357, 1375, 1418, 1479, 1943 |
| SfcI | CTRYAG | 6 cut(s) | 1683, 1697, 1738, 1995, 2625, 2703 |
| Sfr274I | CTCGAG | 1 cut(s) | 1213 |
| SfuI | TTCGAA | 1 cut(s) | 1870 |
| SinI | GGWCC | 1 cut(s) | 1887 |
| SlaI | CTCGAG | 1 cut(s) | 1213 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 541 |
| SmlI | CTYRAG | 3 cut(s) | 1166, 1213, 2064 |
| SmoI | CTYRAG | 3 cut(s) | 1166, 1213, 2064 |
| Sse8387I | CCTGCAGG | 2 cut(s) | 2629, 2707 |
| SsiI | CCGC | 5 cut(s) | 33, 631, 840, 2730, 2733 |
| SspMI | CTAG | 3 cut(s) | 1607, 2165, 2797 |
| SstI | GAGCTC | 2 cut(s) | 17, 1867 |
| StyD4I | CCNGG | 3 cut(s) | 797, 936, 1090 |
| StyI | CCWWGG | 1 cut(s) | 267 |
| TaiI | ACGT | 2 cut(s) | 1439, 2715 |
| TaqI | TCGA | 6 cut(s) | 580, 1214, 1798, 1870, 2681, 2723 |
| TaqII | GACCGA | 1 cut(s) | 1245 |
| TatI | WGTACW | 1 cut(s) | 1985 |
| TauI | GCSGC | 2 cut(s) | 843, 2733 |
| TfiI | GAWTC | 7 cut(s) | 1553, 2110, 2144, 2452, 2530, 2608, 2741 |
| Tru1I | TTAA | 8 cut(s) | 564, 690, 729, 783, 1167, 1242, 1758, 1785 |
| Tru9I | TTAA | 8 cut(s) | 564, 690, 729, 783, 1167, 1242, 1758, 1785 |
| TscAI | CASTG | 5 cut(s) | 622, 901, 1318, 1861, 2659 |
| TseFI | GTSAC | 2 cut(s) | 740, 793 |
| Tsp45I | GTSAC | 2 cut(s) | 740, 793 |
| TspGWI | ACGGA | 1 cut(s) | 260 |
| TspRI | CASTG | 5 cut(s) | 622, 901, 1318, 1861, 2659 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 273, 617, 2288 |
| Vha464I | CTTAAG | 1 cut(s) | 1166 |
| VneI | GTGCAC | 1 cut(s) | 706 |
| VpaK11BI | GGWCC | 1 cut(s) | 1887 |
| VspI | ATTAAT | 1 cut(s) | 729 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2757 |
| XapI | RAATTY | 7 cut(s) | 216, 779, 1610, 1967, 2038, 2374, 2686 |
| XceI | RCATGY | 5 cut(s) | 314, 686, 2410, 2488, 2566 |
| XhoI | CTCGAG | 1 cut(s) | 1213 |
| XmnI | GAANNNNTTC | 3 cut(s) | 113, 216, 1552 |
| XspI | CTAG | 3 cut(s) | 1607, 2165, 2797 |
| Zsp2I | ATGCAT | 2 cut(s) | 458, 654 |