Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002094

Physical Location & Seq

Genomic Coordinates Reverse (-)

53542508 .. 53549465

Gene Structure 6958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003850

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3114 bp

ATGGTGGCCACGACCTCCCCGGACTGGCTCCCCGCTGGCTGGAGCGTCCAATTCAGAGCGCAGAACAGGGGTCGCAGAACTGCGATTTACACCAATTTGGAAACTGGGAAAAAGTTCTTCTCCAAGGACGATGTTATACGCTATACTAAAAAAGCCACCAACTGTGGTGAAGAGCCTCAGCGTACAAATACCAAAAACCCCTCAGATAGAAGTCATTCGCAACTGGCAGCAAACACAGATGAATATCCTGAATGGTTGCCAGATGGTTGGAAAGTCGAATTGAGAACTCGAAAAACTGGCATTCAAGTTGGAAGGGAGTACAAGTGTTACATTGATCCGTTAACGGAATGTACATTTTATTCCAAGCCAGAGGTATTTCGATACCTGAAAACTGTAAAGCGCAAGAGCTGCAAATCCAGAAGTCACAAAATGGTAAACCGCAAGAGATGTATAATCAAAACGAAGACTGTCACTGCCGTGCAGTTGCCAAGCAAAGTTGTGGTTGAGAAGCATAATGTGGAAGATTTACCGCCAGGGTGGATATTGGAGGTCAAAGTTAGAAAGGTTGCAAATCGAATTAGAAGAGATCCGTATTACACTGATCCAGTGCATGGATATGTCTTCCGCTCCAAAAAGGAAGTTATCCGCTACCTACAAACTGGAGAGACCAGTAAACATACAATCAAACCAAAGAGCATGGGCACCAATGATCTAAAGTTGACTGATGATGAAATTGCACTGTCATCTGCAACTAAAAAGCAAAAATTGAAGCACCCTGTCACCAGGCGGCAGCTTTCTGAAGCTAAAAAGAGTTATGAACTGAGTGGCCTAGACTTACAAGAACCTGAAAACTCCAAATTGCAAGACAAGAGGCCCACTGAAAGCCTATGTGCTTTGGCTCCAGTTACTGAGGTTATCCTAGAGAAGCATTTCACTGAGAATCTGGTTGAAGAATGTGTAGAAACTATGGGAGACTGTTCCCCAAGATGGTCATCACAGCCAAAAGCTGAACCATCTAGCAAACACGAAGGCAAAAGGTCATCACAACCGCAAACTGTACTCTCTAACAAACGTGAGGCTAAAAGGTCCAAGTTGCAAGACAAGAGGGTAACTGATGAAAGCAAAGTTGCTTTGGCTCTGACAGCTGAGGCTGTCCCACATAAGCATTTAAGTGAGAGTGTGGTTGAAAATTGTGCCAAAACCAAGGAAGATTCTTCTCCAAGCAAGTCATTACAGCCAAAAGCTGAACTCTCCAACAAGTGTGAAGATAAAATTGCATTGGTTGGAGTTGATGGCTCCTCAACAGATCCTGGCAAAGTGGTTTTTTCTGAAGATGACCCTGCTTTGACTCCTGCTGCTAACACCTTGAATAAGAACTCACATATGAGTCAGATGGAAAGGAGAAACACCAGGAGATCCCAAATAGATGCAAGAAAATCGAAACAGAAGGAAAAGCTTAATTTGCCACGTCGGTCCTCAAAACGACTTGCTGGGCTTGAACCAGAGCCAGAAAATAGCCTGGTTTCCACTGTACAGGCTCTTCAAGTTACAACTAGAAAGTCTAGTAAAGGTGATGGCAGTCGAGATGCCGGTTTGGCTTTAGATGATTCTGTAAATAGAACATCTCAGCAGCTTGGGGATGCATCAGAAACAGAGGTTGCTCATCATACTATAGCTGGAATAATATCTACAGTACAAGGAGAGCCATTGAGCAAGGTCAAGAGGCCATTTGATGGTCTTGAAGTACAGCCTGTAGATACCTTGGTTTCCAATGAACAAACTCTTCACGTTGCAACTAGAAAGTCTAGTAGAGGTGACACAAGTCGAGATGCGGGTTTGGCTTCAGATGATTTTATCAATGGAGCATCTCTGCAGCTTGGGGATGCATCAGAACCGGAGGCTGCACATGATAGGTTAACTGACATAAAGTGTACATCACATGGAGAGTCATTAAACAAGGACAAGACGGTTCTTGATGACCAAGTGGTTCCTAAGGAGCAACATCATAGGCTGGAACCTGAGAAAATGGATGCTGAGAAGCCTGGACCAGAGCTCTGCTTTCTGTTTGGATCAGACCCATGCTTAGAATTTGCCTTCAAAACCCTTACTGGTGAATTGCCAATAGCTGATGCTGTGGATAACGAATCTATTTTGAAACCTGCAGCTGATACAGTGCAAAAAGAGAACACACTTGAAACTGGGCTCTGCAGTAGAAAACCAAGGGCAATTTCGAACAAATCTAAGAAAGCTAAAGAACTTAAGTTACCTCATCGGACTTCAAAACGGCTGGCTGGGCTTGAACCTGAGCTGCTGGCCAAACCTATGTCCAGTGAAAGAGGTCTTCGAAATGCAATGGGAAAGACCTGTAGAAGTAGAGCCCTCCAAGCTGTAGATTTTGCACATGAATCATCTCAGCAGTTTGAGGCTGGGCAAGAGAACAAGGTTGCTCATGATTTGTGTACTGTTATAAACCCTTCAATTCATGAGGAATCATTGAACAAGATTGAGAAATCTCTCAAGGACGAACCTGTTCCTGAGGAGAAACCCCGCGAGTTGGAAATTGAGAGGGCAGCTGTCGAGAATCCTGTGTCACAGTTTTCATTCCCTTTCCTGGATACTTGGTCTGATCCATGCCTTGATTTTGCATTTAAGACCCTTACAGGTGAAATTCCGATAGAGGATGATTTGTTTCAGGGTTACTTTCAGGAAAACCTTGTCACCTCTCACAACCAGAGAGATAGCTTGGCACTGCCAGATTTTGGCTCACCTAACGTTTTCCAAAGTGACATATCACCTCAGTTCGATGCACCAGAACAGTCTGTCTCGGGCCAATTGTTTCCCATGAATTCTTCTTTGCCACCTGCCGGAAATGTGAGCTTGTCAAATTGCAATGGGGTTGGGTTCGGCCAACAGTTGTCCACGAATTCTTCATTTCTGCCTGCAGGAAATTTAAGATTTTCAAGTGGCAGTGGGGTTGGTTCAGGCCAACATTTATCCGTGAATTCTTCATTCTTACCTGCAGGAAATGTGGGCCAGCCAAATTGGAGTGGGATTGGTACACAGAACCCTTGCCTAGGAAGCAAAAAGGATTTCCATGGAAAGGTGAAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

1038

Amino Acids

114.82

Weight (kDa)

8.52

Isoelectric Point (pI)

50.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	84 - 133	8.7e-06	Methyl-CpG binding domain
MBD	PF01429	176 - 222	2.8e-06	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63240
fragaria_vesca	FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01911 FvH4_5g01911
malus_domestica	MD06G1076800.v1.1 MD14G1098200.v1.1
prunus_persica	Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1
pyrus_communis	pycom06g07430 pycom06g07440 pycom14g09640
rosa_chinensis	RchiOBHm_Chr7g0198611 RchiOBHm_Chr7g0198661
rosa_laevigata	RLG00000003850 RLG00000003857
rosa_multiflora	Rmu_co8077932.1_g000001 Rmu_co8274787.1_g000001 Rmu_co8506873.1_g000001 Rmu_sc0000220.1_g000017 Rmu_sc0004229.1_g000004
rosa_roxburghii	Rroxscaffold_3G00257550 Rroxscaffold_3G00257620
rosa_rugosa	Rorug07G0048500 Rorug07G0049000 Rorug07G0049100 Rorug07G0049100
rosa_samantha	Rh4BG123200 Rh7AG172000 Rh7AG172600 Rh7BG175400 Rh7BG176100 Rh7CG181500 Rh7CG182000 Rh7DG174500 Rh7DG174900 Rh7DG175200
rosa_wichuraiana	Rw7G015090 Rw7G015150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2468
AarI	CACCTGC	1 cut(s)	2869
Acc36I	ACCTGC	3 cut(s)	2167, 2869, 3025
AccB1I	GGYRCC	1 cut(s)	701
AccB7I	CCANNNNNTGG	3 cut(s)	611, 1733, 2759
AccBSI	CCGCTC	1 cut(s)	627
AccII	CGCG	1 cut(s)	2550
AciI	CCGC	9 cut(s)	33, 439, 530, 625, 646, 787, 1049, 1832, 2548
AclI	AACGTT	1 cut(s)	2772
AclWI	GGATC	7 cut(s)	329, 581, 596, 1301, 1410, 2077, 2621
AcoI	YGGCCR	3 cut(s)	6, 2313, 2905
AcsI	RAATTY	6 cut(s)	2087, 2667, 2845, 2923, 2947, 3001
AcuI	CTGAAG	3 cut(s)	819, 1350, 1827
AflII	CTTAAG	1 cut(s)	2258
AjiI	CACGTC	1 cut(s)	1469
AjnI	CCWGG	7 cut(s)	532, 782, 1309, 1409, 1518, 2041, 2610
AjuI	GAANNNNNNNTTGG	2 cut(s)	2212, 2244
AleI	CACNNNNGTG	1 cut(s)	476
Alw21I	GWGCWC	1 cut(s)	2055
Alw26I	GTCTC	3 cut(s)	659, 966, 2827
AlwI	GGATC	7 cut(s)	329, 581, 596, 1301, 1410, 2077, 2621
AlwNI	CAGNNNCTG	2 cut(s)	908, 1310
Ama87I	CYCGRG	1 cut(s)	2824
AoxI	GGCC	9 cut(s)	6, 826, 872, 1724, 2313, 2827, 2905, 2983, 3031
ApoI	RAATTY	6 cut(s)	2087, 2667, 2845, 2923, 2947, 3001
Asp700I	GAANNNNTTC	4 cut(s)	113, 214, 929, 2529
AspA2I	CCTAGG	1 cut(s)	3073
AspLEI	GCGC	2 cut(s)	61, 402
AspS9I	GGNCC	6 cut(s)	873, 1086, 1473, 2045, 2827, 3031
AsuC2I	CCSGG	1 cut(s)	20
AsuHPI	GGTGA	9 cut(s)	179, 772, 1583, 1826, 2123, 2675, 2710, 2757, 2784
AsuII	TTCGAA	2 cut(s)	2231, 2344
AvaI	CYCGRG	1 cut(s)	2824
AvaII	GGWCC	3 cut(s)	1086, 1473, 2045
AvrII	CCTAGG	1 cut(s)	3073
AxyI	CCTNAGG	2 cut(s)	1992, 2535
BaeGI	GKGCMC	1 cut(s)	704
BaeI	ACNNNNGTAYC	2 cut(s)	1749, 1782
BalI	TGGCCA	2 cut(s)	8, 2315
BanI	GGYRCC	1 cut(s)	701
BanII	GRGCYC	3 cut(s)	2055, 2205, 2380
BarI	GAAGNNNNNNTAC	2 cut(s)	1524, 1556
BbsI	GAAGAC	3 cut(s)	470, 613, 2333
Bbv12I	GWGCWC	1 cut(s)	2055
BbvCI	CCTCAGC	2 cut(s)	177, 1146
BccI	CCATC	7 cut(s)	257, 981, 1021, 1286, 1387, 1568, 1727
BceAI	ACGGC	2 cut(s)	461, 2300
BcgI	CGANNNNNNTGC	2 cut(s)	1419, 1453
BciT130I	CCWGG	7 cut(s)	534, 784, 1311, 1411, 1520, 2043, 2612
BciVI	GTATCC	1 cut(s)	2608
BcnI	CCSGG	1 cut(s)	20
BcoDI	GTCTC	3 cut(s)	659, 966, 2827
BfaI	CTAG	8 cut(s)	830, 920, 1017, 1554, 1563, 1797, 1806, 3074
BfrI	CTTAAG	1 cut(s)	2258
BfuAI	ACCTGC	3 cut(s)	2167, 2869, 3025
BfuI	GTATCC	1 cut(s)	2608
BglI	GCCNNNNNGGC	1 cut(s)	1595
BlnI	CCTAGG	1 cut(s)	3073
Bme1390I	CCNGG	8 cut(s)	20, 534, 784, 1311, 1411, 1520, 2043, 2612
Bme18I	GGWCC	3 cut(s)	1086, 1473, 2045
BmeT110I	CYCGRG	1 cut(s)	2824
BmgBI	CACGTC	1 cut(s)	1469
BmgT120I	GGNCC	6 cut(s)	873, 1086, 1473, 2045, 2827, 3031
BmiI	GGNNCC	6 cut(s)	29, 703, 900, 1297, 1989, 2016
BmrFI	CCNGG	8 cut(s)	20, 534, 784, 1311, 1411, 1520, 2043, 2612
BmrI	ACTGGG	2 cut(s)	114, 2208
BmuI	ACTGGG	2 cut(s)	114, 2208
BoxI	GACNNNNGTC	1 cut(s)	1821
BpiI	GAAGAC	3 cut(s)	470, 613, 2333
BpmI	CTGGAG	3 cut(s)	61, 681, 885
Bpu10I	CCTNAGC	3 cut(s)	177, 1146, 2304
Bpu14I	TTCGAA	2 cut(s)	2231, 2344
BpuEI	CTTGAG	1 cut(s)	2501
BpuMI	CCSGG	1 cut(s)	20
BsaBI	GATNNNNATC	2 cut(s)	243, 991
BsaI	GGTCTC	1 cut(s)	659
BsaJI	CCNNGG	8 cut(s)	18, 123, 533, 1203, 1761, 2219, 3073, 3094
BsaWI	WCCGGW	1 cut(s)	1894
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bse118I	RCCGGY	1 cut(s)	1589
Bse21I	CCTNAGG	2 cut(s)	1992, 2535
Bse3DI	GCAATG	2 cut(s)	2358, 2896
Bse8I	GATNNNNATC	2 cut(s)	243, 991
BseBI	CCWGG	7 cut(s)	534, 784, 1311, 1411, 1520, 2043, 2612
BseDI	CCNNGG	8 cut(s)	18, 123, 533, 1203, 1761, 2219, 3073, 3094
BseGI	GGATG	4 cut(s)	1645, 1888, 2035, 2686
BseJI	GATNNNNATC	2 cut(s)	243, 991
BseMI	GCAATG	2 cut(s)	2358, 2896
BseRI	GAGGAG	2 cut(s)	1288, 2552
BseSI	GKGCMC	1 cut(s)	704
BseYI	CCCAGC	3 cut(s)	1490, 2291, 2426
BsgI	GTGCAG	2 cut(s)	500, 1887
Bsh1236I	CGCG	1 cut(s)	2550
BshFI	GGCC	9 cut(s)	8, 828, 874, 1726, 2315, 2829, 2907, 2985, 3033
BshNI	GGYRCC	1 cut(s)	701
BsiHKAI	GWGCWC	1 cut(s)	2055
BsiHKCI	CYCGRG	1 cut(s)	2824
BsiSI	CCGG	4 cut(s)	20, 1590, 1895, 2865
BslFI	GGGAC	1 cut(s)	1139
BsmAI	GTCTC	3 cut(s)	659, 966, 2827
BsmFI	GGGAC	1 cut(s)	1139
BsmI	GAATGC	1 cut(s)	300
BsnI	GGCC	9 cut(s)	8, 828, 874, 1726, 2315, 2829, 2907, 2985, 3033
Bso31I	GGTCTC	1 cut(s)	659
BsoBI	CYCGRG	1 cut(s)	2824
Bsp119I	TTCGAA	2 cut(s)	2231, 2344
Bsp1286I	GDGCHC	4 cut(s)	704, 2055, 2205, 2380
Bsp1407I	TGTACA	3 cut(s)	350, 1531, 1931
Bsp143I	GATC	8 cut(s)	334, 586, 601, 709, 1306, 1415, 2069, 2626
Bsp19I	CCATGG	1 cut(s)	3094
BspACI	CCGC	9 cut(s)	33, 439, 530, 625, 646, 787, 1049, 1832, 2548
BspANI	GGCC	9 cut(s)	8, 828, 874, 1726, 2315, 2829, 2907, 2985, 3033
BspFNI	CGCG	1 cut(s)	2550
BspHI	TCATGA	2 cut(s)	2449, 2482
BspLI	GGNNCC	6 cut(s)	29, 703, 900, 1297, 1989, 2016
BspMAI	CTGCAG	5 cut(s)	1875, 2164, 2210, 2944, 3022
BspMI	ACCTGC	3 cut(s)	2167, 2869, 3025
BspPI	GGATC	7 cut(s)	329, 581, 596, 1301, 1410, 2077, 2621
BspQI	GCTCTTC	2 cut(s)	165, 1545
BspT104I	TTCGAA	2 cut(s)	2231, 2344
BspT107I	GGYRCC	1 cut(s)	701
BspTI	CTTAAG	1 cut(s)	2258
BspTNI	GGTCTC	1 cut(s)	659
BsrBI	CCGCTC	1 cut(s)	627
BsrDI	GCAATG	2 cut(s)	2358, 2896
BsrFI	RCCGGY	1 cut(s)	1589
BsrGI	TGTACA	3 cut(s)	350, 1531, 1931
BssAI	RCCGGY	1 cut(s)	1589
BssECI	CCNNGG	8 cut(s)	18, 123, 533, 1203, 1761, 2219, 3073, 3094
BssMI	GATC	8 cut(s)	334, 586, 601, 709, 1306, 1415, 2069, 2626
BssT1I	CCWWGG	6 cut(s)	123, 1203, 1761, 2219, 3073, 3094
Bst2UI	CCWGG	7 cut(s)	534, 784, 1311, 1411, 1520, 2043, 2612
Bst6I	CTCTTC	4 cut(s)	165, 577, 1545, 1788
BstAFI	CTTAAG	1 cut(s)	2258
BstAPI	GCANNNNNTGC	1 cut(s)	408
BstAUI	TGTACA	3 cut(s)	350, 1531, 1931
BstBI	TTCGAA	2 cut(s)	2231, 2344
BstC8I	GCNNGC	5 cut(s)	37, 2289, 2313, 2940, 3035
BstDSI	CCRYGG	1 cut(s)	3094
BstENI	CCTNNNNNAGG	1 cut(s)	3072
BstF5I	GGATG	4 cut(s)	1645, 1888, 2035, 2686
BstFNI	CGCG	1 cut(s)	2550
BstHHI	GCGC	2 cut(s)	61, 402
BstKTI	GATC	8 cut(s)	337, 589, 604, 712, 1309, 1418, 2072, 2629
BstMAI	GTCTC	3 cut(s)	659, 966, 2827
BstMBI	GATC	8 cut(s)	334, 586, 601, 709, 1306, 1415, 2069, 2626
BstMWI	GCNNNNNNNGC	8 cut(s)	408, 1142, 1462, 1595, 1838, 2293, 2384, 3078
BstNI	CCWGG	7 cut(s)	534, 784, 1311, 1411, 1520, 2043, 2612
BstPAI	GACNNNNGTC	1 cut(s)	1821
BstSCI	CCNGG	8 cut(s)	18, 532, 782, 1309, 1409, 1518, 2041, 2610
BstSLI	GKGCMC	1 cut(s)	704
BstUI	CGCG	1 cut(s)	2550
BstV2I	GAAGAC	3 cut(s)	470, 613, 2333
BstX2I	RGATCY	3 cut(s)	586, 1306, 1415
BstXI	CCANNNNNNTGG	1 cut(s)	267
BstYI	RGATCY	3 cut(s)	586, 1306, 1415
Bsu36I	CCTNAGG	2 cut(s)	1992, 2535
BsuI	GTATCC	1 cut(s)	2608
BsuRI	GGCC	9 cut(s)	8, 828, 874, 1726, 2315, 2829, 2907, 2985, 3033
BtgI	CCRYGG	1 cut(s)	3094
BtrI	CACGTC	1 cut(s)	1469
BtsCI	GGATG	4 cut(s)	1645, 1888, 2035, 2686
BtsI	GCAGTG	3 cut(s)	471, 2747, 2974
BveI	ACCTGC	3 cut(s)	2167, 2869, 3025
Cac8I	GCNNGC	5 cut(s)	37, 2289, 2313, 2940, 3035
CaiI	CAGNNNCTG	2 cut(s)	908, 1310
CciI	TCATGA	2 cut(s)	2449, 2482
CfoI	GCGC	2 cut(s)	61, 402
Cfr10I	RCCGGY	1 cut(s)	1589
Cfr13I	GGNCC	6 cut(s)	873, 1086, 1473, 2045, 2827, 3031
CseI	GACGC	1 cut(s)	34
DpnI	GATC	8 cut(s)	336, 588, 603, 711, 1308, 1417, 2071, 2628
DpnII	GATC	8 cut(s)	334, 586, 601, 709, 1306, 1415, 2069, 2626
EaeI	YGGCCR	3 cut(s)	6, 2313, 2905
Eam1104I	CTCTTC	4 cut(s)	165, 577, 1545, 1788
EarI	CTCTTC	4 cut(s)	165, 577, 1545, 1788
Ecl136II	GAGCTC	1 cut(s)	2053
Eco130I	CCWWGG	6 cut(s)	123, 1203, 1761, 2219, 3073, 3094
Eco24I	GRGCYC	3 cut(s)	2055, 2205, 2380
Eco31I	GGTCTC	1 cut(s)	659
Eco47I	GGWCC	3 cut(s)	1086, 1473, 2045
Eco53kI	GAGCTC	1 cut(s)	2053
Eco57I	CTGAAG	3 cut(s)	819, 1350, 1827
Eco81I	CCTNAGG	2 cut(s)	1992, 2535
Eco88I	CYCGRG	1 cut(s)	2824
EcoICRI	GAGCTC	1 cut(s)	2053
EcoNI	CCTNNNNNAGG	1 cut(s)	3072
EcoRI	GAATTC	3 cut(s)	2845, 2923, 3001
EcoRII	CCWGG	7 cut(s)	532, 782, 1309, 1409, 1518, 2041, 2610
EcoT14I	CCWWGG	6 cut(s)	123, 1203, 1761, 2219, 3073, 3094
EcoT22I	ATGCAT	2 cut(s)	1645, 1888
EcoT38I	GRGCYC	3 cut(s)	2055, 2205, 2380
ErhI	CCWWGG	6 cut(s)	123, 1203, 1761, 2219, 3073, 3094
FaqI	GGGAC	1 cut(s)	1139
FauI	CCCGC	3 cut(s)	40, 1825, 2555
FauNDI	CATATG	1 cut(s)	1383
FokI	GGATG	4 cut(s)	1652, 1895, 2042, 2693
FriOI	GRGCYC	3 cut(s)	2055, 2205, 2380
FspBI	CTAG	8 cut(s)	830, 920, 1017, 1554, 1563, 1797, 1806, 3074
GlaI	GCGC	2 cut(s)	60, 401
GsaI	CCCAGC	3 cut(s)	1494, 2295, 2430
GsuI	CTGGAG	3 cut(s)	61, 681, 885
HaeIII	GGCC	9 cut(s)	8, 828, 874, 1726, 2315, 2829, 2907, 2985, 3033
HapII	CCGG	4 cut(s)	20, 1590, 1895, 2865
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	2 cut(s)	61, 402
Hin6I	GCGC	2 cut(s)	59, 400
HinP1I	GCGC	2 cut(s)	59, 400
HincII	GTYRAC	3 cut(s)	342, 720, 1917
HindII	GTYRAC	3 cut(s)	342, 720, 1917
HindIII	AAGCTT	1 cut(s)	1454
HpaI	GTTAAC	2 cut(s)	342, 1917
HpaII	CCGG	4 cut(s)	20, 1590, 1895, 2865
HphI	GGTGA	9 cut(s)	179, 772, 1583, 1826, 2123, 2675, 2710, 2757, 2784
Hpy166II	GTNNAC	9 cut(s)	342, 436, 674, 720, 1917, 1932, 2460, 2919, 3059
Hpy8I	GTNNAC	9 cut(s)	342, 436, 674, 720, 1917, 1932, 2460, 2919, 3059
Hpy99I	CGWCG	1 cut(s)	1473
HpyAV	CCTTC	5 cut(s)	306, 1022, 1441, 2104, 2484
HpyCH4IV	ACGT	4 cut(s)	1072, 1468, 1788, 2772
HpyF10VI	GCNNNNNNNGC	8 cut(s)	408, 1142, 1462, 1595, 1838, 2293, 2384, 3078
HpySE526I	ACGT	4 cut(s)	1072, 1468, 1788, 2772
HspAI	GCGC	2 cut(s)	59, 400
KspAI	GTTAAC	2 cut(s)	342, 1917
Kzo9I	GATC	8 cut(s)	334, 586, 601, 709, 1306, 1415, 2069, 2626
LguI	GCTCTTC	2 cut(s)	165, 1545
LmnI	GCTCC	7 cut(s)	33, 42, 632, 904, 1301, 1862, 1996
MaeI	CTAG	8 cut(s)	830, 920, 1017, 1554, 1563, 1797, 1806, 3074
MaeII	ACGT	4 cut(s)	1072, 1468, 1788, 2772
MalI	GATC	8 cut(s)	336, 588, 603, 711, 1308, 1417, 2071, 2628
MbiI	CCGCTC	1 cut(s)	627
MboI	GATC	8 cut(s)	334, 586, 601, 709, 1306, 1415, 2069, 2626
MfeI	CAATTG	1 cut(s)	2831
MflI	RGATCY	3 cut(s)	586, 1306, 1415
MhlI	GDGCHC	4 cut(s)	704, 2055, 2205, 2380
MlsI	TGGCCA	2 cut(s)	8, 2315
MluNI	TGGCCA	2 cut(s)	8, 2315
MlyI	GAGTC	3 cut(s)	1342, 1396, 1955
MmeI	TCCRAC	5 cut(s)	248, 289, 1264, 1278, 2535
Mox20I	TGGCCA	2 cut(s)	8, 2315
Mph1103I	ATGCAT	2 cut(s)	1645, 1888
MroXI	GAANNNNTTC	4 cut(s)	113, 214, 929, 2529
MscI	TGGCCA	2 cut(s)	8, 2315
MseI	TTAA	8 cut(s)	341, 1169, 1458, 1916, 1952, 2259, 2649, 2951
MslI	CAYNNNNRTG	3 cut(s)	476, 615, 1170
Msp20I	TGGCCA	2 cut(s)	8, 2315
MspA1I	CMGCKG	4 cut(s)	35, 1145, 2165, 2573
MspCI	CTTAAG	1 cut(s)	2258
MspI	CCGG	4 cut(s)	20, 1590, 1895, 2865
MspR9I	CCNGG	8 cut(s)	20, 534, 784, 1311, 1411, 1520, 2043, 2612
MunI	CAATTG	1 cut(s)	2831
Mva1269I	GAATGC	1 cut(s)	300
MvaI	CCWGG	7 cut(s)	534, 784, 1311, 1411, 1520, 2043, 2612
MvnI	CGCG	1 cut(s)	2550
MwoI	GCNNNNNNNGC	8 cut(s)	408, 1142, 1462, 1595, 1838, 2293, 2384, 3078
NciI	CCSGG	1 cut(s)	20
NcoI	CCATGG	1 cut(s)	3094
NdeI	CATATG	1 cut(s)	1383
NdeII	GATC	8 cut(s)	334, 586, 601, 709, 1306, 1415, 2069, 2626
NlaIV	GGNNCC	6 cut(s)	29, 703, 900, 1297, 1989, 2016
NmuCI	GTSAC	7 cut(s)	422, 469, 778, 1814, 2589, 2716, 2783
NsiI	ATGCAT	2 cut(s)	1645, 1888
NspV	TTCGAA	2 cut(s)	2231, 2344
OliI	CACNNNNGTG	1 cut(s)	476
PagI	TCATGA	2 cut(s)	2449, 2482
PaqCI	CACCTGC	1 cut(s)	2869
PciSI	GCTCTTC	2 cut(s)	165, 1545
PctI	GAATGC	1 cut(s)	300
PdmI	GAANNNNTTC	4 cut(s)	113, 214, 929, 2529
PfeI	GAWTC	7 cut(s)	940, 1211, 1607, 2144, 2405, 2489, 2581
PflMI	CCANNNNNTGG	3 cut(s)	611, 1733, 2759
PfoI	TCCNGGA	1 cut(s)	2610
PleI	GAGTC	3 cut(s)	1342, 1395, 1954
PpsI	GAGTC	3 cut(s)	1342, 1395, 1954
PshAI	GACNNNNGTC	1 cut(s)	1821
PsiI	TTATAA	1 cut(s)	2468
Psp124BI	GAGCTC	1 cut(s)	2055
Psp1406I	AACGTT	1 cut(s)	2772
Psp6I	CCWGG	7 cut(s)	532, 782, 1309, 1409, 1518, 2041, 2610
PspFI	CCCAGC	3 cut(s)	1490, 2291, 2426
PspGI	CCWGG	7 cut(s)	532, 782, 1309, 1409, 1518, 2041, 2610
PspN4I	GGNNCC	6 cut(s)	29, 703, 900, 1297, 1989, 2016
PspPI	GGNCC	6 cut(s)	873, 1086, 1473, 2045, 2827, 3031
PsrI	GAACNNNNNNTAC	2 cut(s)	2247, 2279
PstI	CTGCAG	5 cut(s)	1875, 2164, 2210, 2944, 3022
PstNI	CAGNNNCTG	2 cut(s)	908, 1310
PsuI	RGATCY	3 cut(s)	586, 1306, 1415
PvuII	CAGCTG	3 cut(s)	1145, 2165, 2573
RseI	CAYNNNNRTG	3 cut(s)	476, 615, 1170
SacI	GAGCTC	1 cut(s)	2055
SapI	GCTCTTC	2 cut(s)	165, 1545
SaqAI	TTAA	8 cut(s)	341, 1169, 1458, 1916, 1952, 2259, 2649, 2951
Sau3AI	GATC	8 cut(s)	334, 586, 601, 709, 1306, 1415, 2069, 2626
Sau96I	GGNCC	6 cut(s)	873, 1086, 1473, 2045, 2827, 3031
SbfI	CCTGCAGG	2 cut(s)	2944, 3022
SchI	GAGTC	3 cut(s)	1342, 1396, 1955
ScrFI	CCNGG	8 cut(s)	20, 534, 784, 1311, 1411, 1520, 2043, 2612
SdaI	CCTGCAGG	2 cut(s)	2944, 3022
SduI	GDGCHC	4 cut(s)	704, 2055, 2205, 2380
SfuI	TTCGAA	2 cut(s)	2231, 2344
SinI	GGWCC	3 cut(s)	1086, 1473, 2045
SmiMI	CAYNNNNRTG	3 cut(s)	476, 615, 1170
SmlI	CTYRAG	2 cut(s)	2258, 2516
SmoI	CTYRAG	2 cut(s)	2258, 2516
Sse8387I	CCTGCAGG	2 cut(s)	2944, 3022
SsiI	CCGC	9 cut(s)	33, 439, 530, 625, 646, 787, 1049, 1832, 2548
SspMI	CTAG	8 cut(s)	830, 920, 1017, 1554, 1563, 1797, 1806, 3074
SstI	GAGCTC	1 cut(s)	2055
StyD4I	CCNGG	8 cut(s)	18, 532, 782, 1309, 1409, 1518, 2041, 2610
StyI	CCWWGG	6 cut(s)	123, 1203, 1761, 2219, 3073, 3094
TaiI	ACGT	4 cut(s)	1075, 1471, 1791, 2775
TaqII	GACCGA	1 cut(s)	1461
TatI	WGTACW	8 cut(s)	318, 350, 1057, 1531, 1693, 1744, 1931, 2459
TauI	GCSGC	1 cut(s)	790
TfiI	GAWTC	7 cut(s)	940, 1211, 1607, 2144, 2405, 2489, 2581
Tru1I	TTAA	8 cut(s)	341, 1169, 1458, 1916, 1952, 2259, 2649, 2951
Tru9I	TTAA	8 cut(s)	341, 1169, 1458, 1916, 1952, 2259, 2649, 2951
TseFI	GTSAC	7 cut(s)	422, 469, 778, 1814, 2589, 2716, 2783
Tsp45I	GTSAC	7 cut(s)	422, 469, 778, 1814, 2589, 2716, 2783
TspGWI	ACGGA	4 cut(s)	327, 359, 579, 2986
Van91I	CCANNNNNTGG	3 cut(s)	611, 1733, 2759
Vha464I	CTTAAG	1 cut(s)	2258
VpaK11BI	GGWCC	3 cut(s)	1086, 1473, 2045
XagI	CCTNNNNNAGG	1 cut(s)	3072
XapI	RAATTY	6 cut(s)	2087, 2667, 2845, 2923, 2947, 3001
XmaJI	CCTAGG	1 cut(s)	3073
XmnI	GAANNNNTTC	4 cut(s)	113, 214, 929, 2529
XspI	CTAG	8 cut(s)	830, 920, 1017, 1554, 1563, 1797, 1806, 3074
Zsp2I	ATGCAT	2 cut(s)	1645, 1888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.