Methyl-CpG binding domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G63240 |
| fragaria_vesca | FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01911 FvH4_5g01911 |
| malus_domestica | MD06G1076800.v1.1 MD14G1098200.v1.1 |
| prunus_persica | Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 |
| pyrus_communis | pycom06g07430 pycom06g07440 pycom14g09640 |
| rosa_chinensis | RchiOBHm_Chr7g0198611 RchiOBHm_Chr7g0198661 |
| rosa_laevigata | RLG00000003850 RLG00000003857 |
| rosa_multiflora | Rmu_co8077932.1_g000001 Rmu_co8274787.1_g000001 Rmu_co8506873.1_g000001 Rmu_sc0000220.1_g000017 Rmu_sc0004229.1_g000004 |
| rosa_roxburghii | Rroxscaffold_3G00257550 Rroxscaffold_3G00257620 |
| rosa_rugosa | Rorug07G0048500 Rorug07G0049000 Rorug07G0049100 Rorug07G0049100 |
| rosa_samantha | Rh4BG123200 Rh7AG172000 Rh7AG172600 Rh7BG175400 Rh7BG176100 Rh7CG181500 Rh7CG182000 Rh7DG174500 Rh7DG174900 Rh7DG175200 |
| rosa_wichuraiana | Rw7G015090 Rw7G015150 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1638, 1803 |
| Acc65I | GGTACC | 3 cut(s) | 1111, 1384, 2666 |
| AccB1I | GGYRCC | 3 cut(s) | 1111, 1384, 2666 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 617, 1082, 3107 |
| AccBSI | CCGCTC | 1 cut(s) | 633 |
| AccI | GTMKAC | 1 cut(s) | 1263 |
| AccII | CGCG | 3 cut(s) | 163, 165, 3383 |
| AciI | CCGC | 6 cut(s) | 32, 165, 631, 708, 3318, 3396 |
| AclWI | GGATC | 7 cut(s) | 190, 335, 602, 1067, 2001, 2058, 3146 |
| AcoI | YGGCCR | 2 cut(s) | 6, 3175 |
| AcsI | RAATTY | 8 cut(s) | 1017, 1298, 2432, 2530, 2707, 3193, 3427, 3505 |
| AcuI | CTGAAG | 2 cut(s) | 950, 2175 |
| AfaI | GTAC | 5 cut(s) | 358, 1113, 1386, 2668, 2809 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 617, 783, 1082, 2737, 3107, 3578 |
| AflII | CTTAAG | 2 cut(s) | 1973, 2606 |
| AflIII | ACRYGT | 2 cut(s) | 624, 2920 |
| AjiI | CACGTC | 1 cut(s) | 827 |
| AjnI | CCWGG | 4 cut(s) | 695, 874, 904, 1897 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3536, 3568 |
| Alw21I | GWGCWC | 3 cut(s) | 17, 416, 2400 |
| Alw26I | GTCTC | 4 cut(s) | 51, 781, 1035, 1840 |
| AlwI | GGATC | 7 cut(s) | 190, 335, 602, 1067, 2001, 2058, 3146 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 617, 1082, 1355, 1667 |
| Ama87I | CYCGRG | 4 cut(s) | 994, 1267, 1579, 2020 |
| AoxI | GGCC | 9 cut(s) | 6, 1131, 2489, 3175, 3253, 3331, 3409, 3487, 3569 |
| ApoI | RAATTY | 8 cut(s) | 1017, 1298, 2432, 2530, 2707, 3193, 3427, 3505 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 55, 87 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 113, 216, 3247 |
| Asp718I | GGTACC | 3 cut(s) | 1111, 1384, 2666 |
| AspLEI | GCGC | 3 cut(s) | 141, 165, 3383 |
| AspS9I | GGNCC | 6 cut(s) | 42, 238, 1038, 1883, 2970, 3409 |
| AsuC2I | CCSGG | 2 cut(s) | 36, 540 |
| AsuHPI | GGTGA | 1 cut(s) | 2274 |
| AvaI | CYCGRG | 4 cut(s) | 994, 1267, 1579, 2020 |
| AvaII | GGWCC | 5 cut(s) | 42, 238, 1038, 1883, 2970 |
| AxyI | CCTNAGG | 3 cut(s) | 2286, 2337, 2883 |
| BalI | TGGCCA | 2 cut(s) | 8, 3177 |
| BanI | GGYRCC | 3 cut(s) | 1111, 1384, 2666 |
| BanII | GRGCYC | 8 cut(s) | 17, 416, 985, 1258, 1570, 1929, 2230, 2400 |
| BauI | CACGAG | 1 cut(s) | 781 |
| Bbv12I | GWGCWC | 3 cut(s) | 17, 416, 2400 |
| BbvCI | CCTCAGC | 3 cut(s) | 177, 287, 1422 |
| BccI | CCATC | 9 cut(s) | 537, 748, 952, 1375, 1481, 1687, 1793, 2239, 2735 |
| BciT130I | CCWGG | 4 cut(s) | 697, 876, 906, 1899 |
| BciVI | GTATCC | 3 cut(s) | 285, 614, 1708 |
| BcnI | CCSGG | 2 cut(s) | 36, 540 |
| BcoDI | GTCTC | 4 cut(s) | 51, 781, 1035, 1840 |
| BfaI | CTAG | 9 cut(s) | 659, 986, 1259, 2154, 2429, 2984, 3117, 3267, 3616 |
| BfmI | CTRYAG | 5 cut(s) | 1572, 2505, 2560, 3288, 3444 |
| BfrI | CTTAAG | 2 cut(s) | 1973, 2606 |
| BfuAI | ACCTGC | 2 cut(s) | 1638, 1803 |
| BfuI | GTATCC | 3 cut(s) | 285, 614, 1708 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 25 |
| BglII | AGATCT | 1 cut(s) | 2194 |
| BlpI | GCTNAGC | 1 cut(s) | 2399 |
| Bme1390I | CCNGG | 6 cut(s) | 36, 540, 697, 876, 906, 1899 |
| Bme18I | GGWCC | 5 cut(s) | 42, 238, 1038, 1883, 2970 |
| BmeT110I | CYCGRG | 4 cut(s) | 994, 1267, 1579, 2020 |
| BmgBI | CACGTC | 1 cut(s) | 827 |
| BmgT120I | GGNCC | 6 cut(s) | 42, 238, 1038, 1883, 2970, 3409 |
| BmiI | GGNNCC | 8 cut(s) | 29, 240, 1113, 1386, 2229, 2292, 2334, 2668 |
| BmrFI | CCNGG | 6 cut(s) | 36, 540, 697, 876, 906, 1899 |
| BmrI | ACTGGG | 3 cut(s) | 114, 1185, 2154 |
| BmuI | ACTGGG | 3 cut(s) | 114, 1185, 2154 |
| BpmI | CTGGAG | 3 cut(s) | 331, 687, 915 |
| Bpu10I | CCTNAGC | 5 cut(s) | 177, 287, 1422, 2652, 3328 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2399 |
| BpuEI | CTTGAG | 3 cut(s) | 788, 968, 2789 |
| BpuMI | CCSGG | 2 cut(s) | 36, 540 |
| Bsa29I | ATCGAT | 1 cut(s) | 580 |
| BsaAI | YACGTR | 1 cut(s) | 625 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3036 |
| BsaI | GGTCTC | 1 cut(s) | 51 |
| BsaJI | CCNNGG | 8 cut(s) | 695, 874, 1791, 1897, 2573, 2589, 2676, 3598 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 617, 783, 1082, 2737, 3107, 3578 |
| Bse118I | RCCGGY | 1 cut(s) | 1620 |
| Bse1I | ACTGG | 5 cut(s) | 29, 109, 670, 1180, 2149 |
| Bse21I | CCTNAGG | 3 cut(s) | 2286, 2337, 2883 |
| Bse3DI | GCAATG | 2 cut(s) | 976, 1865 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3036 |
| BseBI | CCWGG | 4 cut(s) | 697, 876, 906, 1899 |
| BseCI | ATCGAT | 1 cut(s) | 580 |
| BseDI | CCNNGG | 8 cut(s) | 695, 874, 1791, 1897, 2573, 2589, 2676, 3598 |
| BseJI | GATNNNNATC | 1 cut(s) | 3036 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 617, 783, 1082, 2737, 3107, 3578 |
| BseMI | GCAATG | 2 cut(s) | 976, 1865 |
| BseNI | ACTGG | 5 cut(s) | 29, 109, 670, 1180, 2149 |
| BseRI | GAGGAG | 4 cut(s) | 799, 991, 1557, 2849 |
| BseYI | CCCAGC | 6 cut(s) | 1055, 1328, 1640, 2081, 2639, 2731 |
| BsgI | GTGCAG | 3 cut(s) | 212, 849, 1419 |
| Bsh1236I | CGCG | 3 cut(s) | 163, 165, 3383 |
| BshFI | GGCC | 9 cut(s) | 8, 1133, 2491, 3177, 3255, 3333, 3411, 3489, 3571 |
| BshNI | GGYRCC | 3 cut(s) | 1111, 1384, 2666 |
| BshVI | ATCGAT | 1 cut(s) | 580 |
| BsiHKAI | GWGCWC | 3 cut(s) | 17, 416, 2400 |
| BsiHKCI | CYCGRG | 4 cut(s) | 994, 1267, 1579, 2020 |
| BsiSI | CCGG | 5 cut(s) | 20, 36, 539, 1621, 3525 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 617, 783, 1082, 2737, 3107, 3578 |
| BsmAI | GTCTC | 4 cut(s) | 51, 781, 1035, 1840 |
| BsmI | GAATGC | 4 cut(s) | 2403, 2438, 2993, 3200 |
| BsnI | GGCC | 9 cut(s) | 8, 1133, 2491, 3177, 3255, 3333, 3411, 3489, 3571 |
| Bso31I | GGTCTC | 1 cut(s) | 51 |
| BsoBI | CYCGRG | 4 cut(s) | 994, 1267, 1579, 2020 |
| Bsp1286I | GDGCHC | 8 cut(s) | 17, 416, 985, 1258, 1570, 1929, 2230, 2400 |
| Bsp1407I | TGTACA | 1 cut(s) | 356 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2399 |
| Bsp19I | CCATGG | 1 cut(s) | 3598 |
| BspACI | CCGC | 6 cut(s) | 32, 165, 631, 708, 3318, 3396 |
| BspANI | GGCC | 9 cut(s) | 8, 1133, 2491, 3177, 3255, 3333, 3411, 3489, 3571 |
| BspDI | ATCGAT | 1 cut(s) | 580 |
| BspFNI | CGCG | 3 cut(s) | 163, 165, 3383 |
| BspLI | GGNNCC | 8 cut(s) | 29, 240, 1113, 1386, 2229, 2292, 2334, 2668 |
| BspMAI | CTGCAG | 3 cut(s) | 2509, 3292, 3448 |
| BspMI | ACCTGC | 2 cut(s) | 1638, 1803 |
| BspPI | GGATC | 7 cut(s) | 190, 335, 602, 1067, 2001, 2058, 3146 |
| BspQI | GCTCTTC | 3 cut(s) | 404, 1558, 2862 |
| BspT107I | GGYRCC | 3 cut(s) | 1111, 1384, 2666 |
| BspTI | CTTAAG | 2 cut(s) | 1973, 2606 |
| BspTNI | GGTCTC | 1 cut(s) | 51 |
| BsrBI | CCGCTC | 1 cut(s) | 633 |
| BsrDI | GCAATG | 2 cut(s) | 976, 1865 |
| BsrFI | RCCGGY | 1 cut(s) | 1620 |
| BsrGI | TGTACA | 1 cut(s) | 356 |
| BsrI | ACTGG | 5 cut(s) | 29, 109, 670, 1180, 2149 |
| BssAI | RCCGGY | 1 cut(s) | 1620 |
| BssECI | CCNNGG | 8 cut(s) | 695, 874, 1791, 1897, 2573, 2589, 2676, 3598 |
| BssSI | CACGAG | 1 cut(s) | 781 |
| BssT1I | CCWWGG | 3 cut(s) | 2589, 2676, 3598 |
| Bst2BI | CACGAG | 1 cut(s) | 781 |
| Bst2UI | CCWGG | 4 cut(s) | 697, 876, 906, 1899 |
| Bst6I | CTCTTC | 4 cut(s) | 313, 404, 1558, 2862 |
| BstAFI | CTTAAG | 2 cut(s) | 1973, 2606 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 453, 2792 |
| BstAUI | TGTACA | 1 cut(s) | 356 |
| BstBAI | YACGTR | 1 cut(s) | 625 |
| BstC8I | GCNNGC | 8 cut(s) | 17, 2793, 2874, 3227, 3444, 3491, 3518, 3522 |
| BstDSI | CCRYGG | 1 cut(s) | 3598 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3576 |
| BstFNI | CGCG | 3 cut(s) | 163, 165, 3383 |
| BstHHI | GCGC | 3 cut(s) | 141, 165, 3383 |
| BstMAI | GTCTC | 4 cut(s) | 51, 781, 1035, 1840 |
| BstNI | CCWGG | 4 cut(s) | 697, 876, 906, 1899 |
| BstNSI | RCATGY | 7 cut(s) | 686, 1186, 1771, 2924, 3229, 3307, 3463 |
| BstSCI | CCNGG | 6 cut(s) | 34, 538, 695, 874, 904, 1897 |
| BstSFI | CTRYAG | 5 cut(s) | 1572, 2505, 2560, 3288, 3444 |
| BstUI | CGCG | 3 cut(s) | 163, 165, 3383 |
| BstX2I | RGATCY | 4 cut(s) | 195, 607, 2006, 2194 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 543 |
| BstYI | RGATCY | 4 cut(s) | 195, 607, 2006, 2194 |
| Bsu15I | ATCGAT | 1 cut(s) | 580 |
| Bsu36I | CCTNAGG | 3 cut(s) | 2286, 2337, 2883 |
| BsuI | GTATCC | 3 cut(s) | 285, 614, 1708 |
| BsuRI | GGCC | 9 cut(s) | 8, 1133, 2491, 3177, 3255, 3333, 3411, 3489, 3571 |
| BsuTUI | ATCGAT | 1 cut(s) | 580 |
| BtgI | CCRYGG | 1 cut(s) | 3598 |
| BtrI | CACGTC | 1 cut(s) | 827 |
| BtsI | GCAGTG | 2 cut(s) | 3244, 3572 |
| BtsIMutI | CAGTG | 3 cut(s) | 1227, 3244, 3572 |
| BveI | ACCTGC | 2 cut(s) | 1638, 1803 |
| Cac8I | GCNNGC | 8 cut(s) | 17, 2793, 2874, 3227, 3444, 3491, 3518, 3522 |
| CaiI | CAGNNNCTG | 4 cut(s) | 617, 1082, 1355, 1667 |
| CfoI | GCGC | 3 cut(s) | 141, 165, 3383 |
| Cfr10I | RCCGGY | 1 cut(s) | 1620 |
| Cfr13I | GGNCC | 6 cut(s) | 42, 238, 1038, 1883, 2970, 3409 |
| ClaI | ATCGAT | 1 cut(s) | 580 |
| CseI | GACGC | 1 cut(s) | 3372 |
| Csp6I | GTAC | 5 cut(s) | 357, 1112, 1385, 2667, 2808 |
| CviQI | GTAC | 5 cut(s) | 357, 1112, 1385, 2667, 2808 |
| DraI | TTTAAA | 2 cut(s) | 691, 2271 |
| EaeI | YGGCCR | 2 cut(s) | 6, 3175 |
| Eam1104I | CTCTTC | 4 cut(s) | 313, 404, 1558, 2862 |
| EarI | CTCTTC | 4 cut(s) | 313, 404, 1558, 2862 |
| Ecl136II | GAGCTC | 3 cut(s) | 15, 414, 2398 |
| Eco130I | CCWWGG | 3 cut(s) | 2589, 2676, 3598 |
| Eco147I | AGGCCT | 1 cut(s) | 2491 |
| Eco24I | GRGCYC | 8 cut(s) | 17, 416, 985, 1258, 1570, 1929, 2230, 2400 |
| Eco31I | GGTCTC | 1 cut(s) | 51 |
| Eco47I | GGWCC | 5 cut(s) | 42, 238, 1038, 1883, 2970 |
| Eco53kI | GAGCTC | 3 cut(s) | 15, 414, 2398 |
| Eco57I | CTGAAG | 2 cut(s) | 950, 2175 |
| Eco81I | CCTNAGG | 3 cut(s) | 2286, 2337, 2883 |
| Eco88I | CYCGRG | 4 cut(s) | 994, 1267, 1579, 2020 |
| EcoICRI | GAGCTC | 3 cut(s) | 15, 414, 2398 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3576 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1883 |
| EcoRI | GAATTC | 3 cut(s) | 2432, 3193, 3427 |
| EcoRII | CCWGG | 4 cut(s) | 695, 874, 904, 1897 |
| EcoT14I | CCWWGG | 3 cut(s) | 2589, 2676, 3598 |
| EcoT22I | ATGCAT | 2 cut(s) | 458, 688 |
| EcoT38I | GRGCYC | 8 cut(s) | 17, 416, 985, 1258, 1570, 1929, 2230, 2400 |
| ErhI | CCWWGG | 3 cut(s) | 2589, 2676, 3598 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2775, 2807, 3045, 3077 |
| FauI | CCCGC | 4 cut(s) | 39, 701, 3311, 3389 |
| FblI | GTMKAC | 1 cut(s) | 1263 |
| FriOI | GRGCYC | 8 cut(s) | 17, 416, 985, 1258, 1570, 1929, 2230, 2400 |
| FspBI | CTAG | 9 cut(s) | 659, 986, 1259, 2154, 2429, 2984, 3117, 3267, 3616 |
| GlaI | GCGC | 3 cut(s) | 140, 164, 3382 |
| GsaI | CCCAGC | 6 cut(s) | 1059, 1332, 1644, 2085, 2643, 2735 |
| GsuI | CTGGAG | 3 cut(s) | 331, 687, 915 |
| HaeIII | GGCC | 9 cut(s) | 8, 1133, 2491, 3177, 3255, 3333, 3411, 3489, 3571 |
| HapII | CCGG | 5 cut(s) | 20, 36, 539, 1621, 3525 |
| HgaI | GACGC | 1 cut(s) | 3372 |
| HhaI | GCGC | 3 cut(s) | 141, 165, 3383 |
| Hin6I | GCGC | 3 cut(s) | 139, 163, 3381 |
| HinP1I | GCGC | 3 cut(s) | 139, 163, 3381 |
| HindIII | AAGCTT | 2 cut(s) | 2045, 2789 |
| HpaII | CCGG | 5 cut(s) | 20, 36, 539, 1621, 3525 |
| HphI | GGTGA | 1 cut(s) | 2274 |
| Hpy166II | GTNNAC | 3 cut(s) | 238, 680, 1264 |
| Hpy8I | GTNNAC | 3 cut(s) | 238, 680, 1264 |
| Hpy99I | CGWCG | 3 cut(s) | 1038, 1311, 2064 |
| HpyCH4IV | ACGT | 3 cut(s) | 624, 826, 3297 |
| HpySE526I | ACGT | 3 cut(s) | 624, 826, 3297 |
| HspAI | GCGC | 3 cut(s) | 139, 163, 3381 |
| KpnI | GGTACC | 3 cut(s) | 1115, 1388, 2670 |
| LguI | GCTCTTC | 3 cut(s) | 404, 1558, 2862 |
| MaeI | CTAG | 9 cut(s) | 659, 986, 1259, 2154, 2429, 2984, 3117, 3267, 3616 |
| MaeII | ACGT | 3 cut(s) | 624, 826, 3297 |
| MaeIII | GTNAC | 8 cut(s) | 332, 475, 562, 778, 1506, 2245, 3044, 3339 |
| MbiI | CCGCTC | 1 cut(s) | 633 |
| MflI | RGATCY | 4 cut(s) | 195, 607, 2006, 2194 |
| MhlI | GDGCHC | 8 cut(s) | 17, 416, 985, 1258, 1570, 1929, 2230, 2400 |
| MlsI | TGGCCA | 2 cut(s) | 8, 3177 |
| MluNI | TGGCCA | 2 cut(s) | 8, 3177 |
| MlyI | GAGTC | 4 cut(s) | 608, 907, 1259, 2995 |
| MmeI | TCCRAC | 6 cut(s) | 254, 295, 1320, 1632, 1858, 2997 |
| Mox20I | TGGCCA | 2 cut(s) | 8, 3177 |
| Mph1103I | ATGCAT | 2 cut(s) | 458, 688 |
| MroXI | GAANNNNTTC | 3 cut(s) | 113, 216, 3247 |
| MscI | TGGCCA | 2 cut(s) | 8, 3177 |
| MslI | CAYNNNNRTG | 2 cut(s) | 541, 3603 |
| Msp20I | TGGCCA | 2 cut(s) | 8, 3177 |
| MspA1I | CMGCKG | 8 cut(s) | 490, 1421, 1733, 2510, 2735, 2764, 3318, 3396 |
| MspCI | CTTAAG | 2 cut(s) | 1973, 2606 |
| MspI | CCGG | 5 cut(s) | 20, 36, 539, 1621, 3525 |
| MspR9I | CCNGG | 6 cut(s) | 36, 540, 697, 876, 906, 1899 |
| Mva1269I | GAATGC | 4 cut(s) | 2403, 2438, 2993, 3200 |
| MvaI | CCWGG | 4 cut(s) | 697, 876, 906, 1899 |
| MvnI | CGCG | 3 cut(s) | 163, 165, 3383 |
| NciI | CCSGG | 2 cut(s) | 36, 540 |
| NcoI | CCATGG | 1 cut(s) | 3598 |
| NlaIV | GGNNCC | 8 cut(s) | 29, 240, 1113, 1386, 2229, 2292, 2334, 2668 |
| NmuCI | GTSAC | 3 cut(s) | 475, 778, 1506 |
| NsiI | ATGCAT | 2 cut(s) | 458, 688 |
| NspI | RCATGY | 7 cut(s) | 686, 1186, 1771, 2924, 3229, 3307, 3463 |
| PaeI | GCATGC | 1 cut(s) | 3229 |
| PaeR7I | CTCGAG | 4 cut(s) | 994, 1267, 1579, 2020 |
| PceI | AGGCCT | 1 cut(s) | 2491 |
| PciI | ACATGT | 1 cut(s) | 2920 |
| PciSI | GCTCTTC | 3 cut(s) | 404, 1558, 2862 |
| PctI | GAATGC | 4 cut(s) | 2403, 2438, 2993, 3200 |
| PdmI | GAANNNNTTC | 3 cut(s) | 113, 216, 3247 |
| PfeI | GAWTC | 7 cut(s) | 1352, 2165, 2360, 2963, 3271, 3349, 3560 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 617, 1082, 3107 |
| PleI | GAGTC | 4 cut(s) | 608, 907, 1259, 2995 |
| PpsI | GAGTC | 4 cut(s) | 608, 907, 1259, 2995 |
| Ppu21I | YACGTR | 1 cut(s) | 625 |
| PpuMI | RGGWCCY | 1 cut(s) | 1883 |
| PscI | ACATGT | 1 cut(s) | 2920 |
| Psp124BI | GAGCTC | 3 cut(s) | 17, 416, 2400 |
| Psp5II | RGGWCCY | 1 cut(s) | 1883 |
| Psp6I | CCWGG | 4 cut(s) | 695, 874, 904, 1897 |
| PspFI | CCCAGC | 6 cut(s) | 1055, 1328, 1640, 2081, 2639, 2731 |
| PspGI | CCWGG | 4 cut(s) | 695, 874, 904, 1897 |
| PspN4I | GGNNCC | 8 cut(s) | 29, 240, 1113, 1386, 2229, 2292, 2334, 2668 |
| PspPI | GGNCC | 6 cut(s) | 42, 238, 1038, 1883, 2970, 3409 |
| PspPPI | RGGWCCY | 1 cut(s) | 1883 |
| PspXI | VCTCGAGB | 4 cut(s) | 994, 1267, 1579, 2020 |
| PstI | CTGCAG | 3 cut(s) | 2509, 3292, 3448 |
| PstNI | CAGNNNCTG | 4 cut(s) | 617, 1082, 1355, 1667 |
| PsuI | RGATCY | 4 cut(s) | 195, 607, 2006, 2194 |
| PvuII | CAGCTG | 6 cut(s) | 490, 1421, 1733, 2510, 2735, 2764 |
| RsaI | GTAC | 5 cut(s) | 358, 1113, 1386, 2668, 2809 |
| RsaNI | GTAC | 5 cut(s) | 357, 1112, 1385, 2667, 2808 |
| RseI | CAYNNNNRTG | 2 cut(s) | 541, 3603 |
| SacI | GAGCTC | 3 cut(s) | 17, 416, 2400 |
| SapI | GCTCTTC | 3 cut(s) | 404, 1558, 2862 |
| Sau96I | GGNCC | 6 cut(s) | 42, 238, 1038, 1883, 2970, 3409 |
| SbfI | CCTGCAGG | 2 cut(s) | 3292, 3448 |
| SchI | GAGTC | 4 cut(s) | 608, 907, 1259, 2995 |
| ScrFI | CCNGG | 6 cut(s) | 36, 540, 697, 876, 906, 1899 |
| SdaI | CCTGCAGG | 2 cut(s) | 3292, 3448 |
| SduI | GDGCHC | 8 cut(s) | 17, 416, 985, 1258, 1570, 1929, 2230, 2400 |
| SfcI | CTRYAG | 5 cut(s) | 1572, 2505, 2560, 3288, 3444 |
| Sfr274I | CTCGAG | 4 cut(s) | 994, 1267, 1579, 2020 |
| SinI | GGWCC | 5 cut(s) | 42, 238, 1038, 1883, 2970 |
| SlaI | CTCGAG | 4 cut(s) | 994, 1267, 1579, 2020 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 541, 3603 |
| SmlI | CTYRAG | 9 cut(s) | 767, 947, 994, 1267, 1579, 1973, 2020, 2606, 2768 |
| SmoI | CTYRAG | 9 cut(s) | 767, 947, 994, 1267, 1579, 1973, 2020, 2606, 2768 |
| SphI | GCATGC | 1 cut(s) | 3229 |
| Sse8387I | CCTGCAGG | 2 cut(s) | 3292, 3448 |
| SseBI | AGGCCT | 1 cut(s) | 2491 |
| SsiI | CCGC | 6 cut(s) | 32, 165, 631, 708, 3318, 3396 |
| SspI | AATATT | 1 cut(s) | 2469 |
| SspMI | CTAG | 9 cut(s) | 659, 986, 1259, 2154, 2429, 2984, 3117, 3267, 3616 |
| SstI | GAGCTC | 3 cut(s) | 17, 416, 2400 |
| StuI | AGGCCT | 1 cut(s) | 2491 |
| StyD4I | CCNGG | 6 cut(s) | 34, 538, 695, 874, 904, 1897 |
| StyI | CCWWGG | 3 cut(s) | 2589, 2676, 3598 |
| TaiI | ACGT | 3 cut(s) | 627, 829, 3300 |
| TaqII | GACCGA | 2 cut(s) | 1026, 1805 |
| TatI | WGTACW | 2 cut(s) | 356, 2807 |
| TfiI | GAWTC | 7 cut(s) | 1352, 2165, 2360, 2963, 3271, 3349, 3560 |
| TscAI | CASTG | 3 cut(s) | 1234, 3244, 3572 |
| TseFI | GTSAC | 3 cut(s) | 475, 778, 1506 |
| Tsp45I | GTSAC | 3 cut(s) | 475, 778, 1506 |
| TspGWI | ACGGA | 3 cut(s) | 34, 421, 1693 |
| TspRI | CASTG | 3 cut(s) | 1234, 3244, 3572 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 617, 1082, 3107 |
| Vha464I | CTTAAG | 2 cut(s) | 1973, 2606 |
| VpaK11BI | GGWCC | 5 cut(s) | 42, 238, 1038, 1883, 2970 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3576 |
| XapI | RAATTY | 8 cut(s) | 1017, 1298, 2432, 2530, 2707, 3193, 3427, 3505 |
| XbaI | TCTAGA | 1 cut(s) | 658 |
| XceI | RCATGY | 7 cut(s) | 686, 1186, 1771, 2924, 3229, 3307, 3463 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 101, 2734 |
| XhoI | CTCGAG | 4 cut(s) | 994, 1267, 1579, 2020 |
| XmiI | GTMKAC | 1 cut(s) | 1263 |
| XmnI | GAANNNNTTC | 3 cut(s) | 113, 216, 3247 |
| XspI | CTAG | 9 cut(s) | 659, 986, 1259, 2154, 2429, 2984, 3117, 3267, 3616 |
| Zsp2I | ATGCAT | 2 cut(s) | 458, 688 |