Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002094

Physical Location & Seq

Genomic Coordinates Forward (+)

16057100 .. 16057575

Gene Structure 476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG175200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGTTTCCGTCTACTGCTGTAATAAAAAGAATGACCACGTCAAAGTGGGTTCCTGTAGAAGTAAAGCCCTCCAAGCTGTAGATTCTGCACATGAAGTATCTCAGCAGTTTGAGGCTGGCCAAAAGAACAAGGTTGTTTATGATTCGTGCACAATTATAAACTCTTTACTTCATGAGGAATCATTGAACAAGATTGAGAAATCTCTCAAGCACCAAGCTGTTCCTGAGGAGAAACCCCGGGAGTTGGCCGGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

85

Amino Acids

9.47

Weight (kDa)

7.7

Isoelectric Point (pI)

56.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63240
fragaria_vesca	FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01911 FvH4_5g01911
malus_domestica	MD06G1076800.v1.1 MD14G1098200.v1.1
prunus_persica	Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1
pyrus_communis	pycom06g07430 pycom06g07440 pycom14g09640
rosa_chinensis	RchiOBHm_Chr7g0198611 RchiOBHm_Chr7g0198661
rosa_laevigata	RLG00000003850 RLG00000003857
rosa_multiflora	Rmu_co8077932.1_g000001 Rmu_co8274787.1_g000001 Rmu_co8506873.1_g000001 Rmu_sc0000220.1_g000017 Rmu_sc0004229.1_g000004
rosa_roxburghii	Rroxscaffold_3G00257550 Rroxscaffold_3G00257620
rosa_rugosa	Rorug07G0048500 Rorug07G0049000 Rorug07G0049100 Rorug07G0049100
rosa_samantha	Rh4BG123200 Rh7AG172000 Rh7AG172600 Rh7BG175400 Rh7BG176100 Rh7CG181500 Rh7CG182000 Rh7DG174500 Rh7DG174900 Rh7DG175200
rosa_wichuraiana	Rw7G015090 Rw7G015150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	12
AcoI	YGGCCR	2 cut(s)	118, 246
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	1 cut(s)	187
AjiI	CACGTC	1 cut(s)	40
AluBI	AGCT	2 cut(s)	77, 218
AluI	AGCT	2 cut(s)	77, 218
Alw21I	GWGCWC	1 cut(s)	152
Alw44I	GTGCAC	1 cut(s)	148
Ama87I	CYCGRG	1 cut(s)	237
AoxI	GGCC	2 cut(s)	118, 246
ApaLI	GTGCAC	1 cut(s)	148
AsuC2I	CCSGG	2 cut(s)	238, 239
AvaI	CYCGRG	1 cut(s)	237
AxyI	CCTNAGG	1 cut(s)	225
BaeGI	GKGCMC	1 cut(s)	152
BalI	TGGCCA	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	152
BcnI	CCSGG	2 cut(s)	238, 239
BfmI	CTRYAG	2 cut(s)	55, 78
Bme1390I	CCNGG	2 cut(s)	238, 239
BmeT110I	CYCGRG	1 cut(s)	237
BmgBI	CACGTC	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	52
BmrFI	CCNGG	2 cut(s)	238, 239
BpuEI	CTTGAG	1 cut(s)	191
BpuMI	CCSGG	2 cut(s)	238, 239
BsaJI	CCNNGG	2 cut(s)	236, 237
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse21I	CCTNAGG	1 cut(s)	225
BseDI	CCNNGG	2 cut(s)	236, 237
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMII	CTCAG	2 cut(s)	116, 216
BseRI	GAGGAG	1 cut(s)	242
BseSI	GKGCMC	1 cut(s)	152
BsgI	GTGCAG	1 cut(s)	72
BshFI	GGCC	2 cut(s)	120, 248
BsiHKAI	GWGCWC	1 cut(s)	152
BsiHKCI	CYCGRG	1 cut(s)	237
BsiSI	CCGG	2 cut(s)	238, 249
BslI	CCNNNNNNNGG	1 cut(s)	244
BsnI	GGCC	2 cut(s)	120, 248
BsoBI	CYCGRG	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	152
BspANI	GGCC	2 cut(s)	120, 248
BspCNI	CTCAG	2 cut(s)	115, 217
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	52
BssECI	CCNNGG	2 cut(s)	236, 237
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	2 cut(s)	102, 225
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstSCI	CCNGG	2 cut(s)	236, 237
BstSFI	CTRYAG	2 cut(s)	55, 78
BstSLI	GKGCMC	1 cut(s)	152
Bsu36I	CCTNAGG	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	120, 248
BtrI	CACGTC	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	118
CciI	TCATGA	1 cut(s)	172
Cfr9I	CCCGGG	1 cut(s)	237
CviAII	CATG	2 cut(s)	92, 173
CviJI	RGCY	6 cut(s)	68, 77, 116, 120, 218, 248
CviKI_1	RGCY	6 cut(s)	68, 77, 116, 120, 218, 248
DdeI	CTNAG	2 cut(s)	102, 225
EaeI	YGGCCR	2 cut(s)	118, 246
Eco81I	CCTNAGG	1 cut(s)	225
Eco88I	CYCGRG	1 cut(s)	237
FaeI	CATG	2 cut(s)	95, 176
FaiI	YATR	4 cut(s)	93, 141, 158, 174
FatI	CATG	2 cut(s)	91, 172
FblI	GTMKAC	1 cut(s)	12
HaeIII	GGCC	2 cut(s)	120, 248
HapII	CCGG	2 cut(s)	238, 249
Hin1II	CATG	2 cut(s)	95, 176
HinfI	GANTC	3 cut(s)	83, 143, 179
HpaII	CCGG	2 cut(s)	238, 249
Hpy166II	GTNNAC	2 cut(s)	13, 150
Hpy188III	TCNNGA	2 cut(s)	173, 224
Hpy8I	GTNNAC	2 cut(s)	13, 150
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	2 cut(s)	89, 150
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	2 cut(s)	102, 225
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	95, 176
LpnPI	CCDG	4 cut(s)	67, 102, 237, 251
MaeII	ACGT	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	152
MlsI	TGGCCA	1 cut(s)	120
MluCI	AATT	2 cut(s)	153, 253
MluNI	TGGCCA	1 cut(s)	120
MnlI	CCTC	4 cut(s)	80, 106, 169, 220
Mox20I	TGGCCA	1 cut(s)	120
MscI	TGGCCA	1 cut(s)	120
Msp20I	TGGCCA	1 cut(s)	120
MspI	CCGG	2 cut(s)	238, 249
MspR9I	CCNGG	2 cut(s)	238, 239
MwoI	GCNNNNNNNGC	1 cut(s)	74
NciI	CCSGG	2 cut(s)	238, 239
NlaIII	CATG	2 cut(s)	95, 176
NlaIV	GGNNCC	1 cut(s)	52
PagI	TCATGA	1 cut(s)	172
PfeI	GAWTC	3 cut(s)	83, 143, 179
PflFI	GACNNNGTC	1 cut(s)	38
PsiI	TTATAA	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	52
PsyI	GACNNNGTC	1 cut(s)	38
ScrFI	CCNGG	2 cut(s)	238, 239
SduI	GDGCHC	1 cut(s)	152
SetI	ASST	4 cut(s)	42, 79, 135, 220
SfcI	CTRYAG	2 cut(s)	55, 78
SmaI	CCCGGG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	2 cut(s)	153, 253
StyD4I	CCNGG	2 cut(s)	236, 237
TaiI	ACGT	1 cut(s)	42
TasI	AATT	2 cut(s)	153, 253
TfiI	GAWTC	3 cut(s)	83, 143, 179
TspDTI	ATGAA	2 cut(s)	108, 161
TspMI	CCCGGG	1 cut(s)	237
Tth111I	GACNNNGTC	1 cut(s)	38
VneI	GTGCAC	1 cut(s)	148
XmaI	CCCGGG	1 cut(s)	237
XmiI	GTMKAC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.