Methyl-CpG binding domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G63240 |
| fragaria_vesca | FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01911 FvH4_5g01911 |
| malus_domestica | MD06G1076800.v1.1 MD14G1098200.v1.1 |
| prunus_persica | Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 |
| pyrus_communis | pycom06g07430 pycom06g07440 pycom14g09640 |
| rosa_chinensis | RchiOBHm_Chr7g0198611 RchiOBHm_Chr7g0198661 |
| rosa_laevigata | RLG00000003850 RLG00000003857 |
| rosa_multiflora | Rmu_co8077932.1_g000001 Rmu_co8274787.1_g000001 Rmu_co8506873.1_g000001 Rmu_sc0000220.1_g000017 Rmu_sc0004229.1_g000004 |
| rosa_roxburghii | Rroxscaffold_3G00257550 Rroxscaffold_3G00257620 |
| rosa_rugosa | Rorug07G0048500 Rorug07G0049000 Rorug07G0049100 Rorug07G0049100 |
| rosa_samantha | Rh4BG123200 Rh7AG172000 Rh7AG172600 Rh7BG175400 Rh7BG176100 Rh7CG181500 Rh7CG182000 Rh7DG174500 Rh7DG174900 Rh7DG175200 |
| rosa_wichuraiana | Rw7G015090 Rw7G015150 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 5 cut(s) | 44, 1134, 1410, 1686, 2542 |
| Acc65I | GGTACC | 2 cut(s) | 1468, 1744 |
| AccB1I | GGYRCC | 2 cut(s) | 1468, 1744 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 194 |
| AccBSI | CCGCTC | 1 cut(s) | 705 |
| AccI | GTMKAC | 2 cut(s) | 1212, 1623 |
| AccII | CGCG | 1 cut(s) | 3638 |
| AciI | CCGC | 9 cut(s) | 185, 222, 703, 1860, 2783, 3399, 3480, 3606, 3638 |
| AclWI | GGATC | 4 cut(s) | 241, 482, 674, 944 |
| AcoI | YGGCCR | 2 cut(s) | 196, 3181 |
| AcuI | CTGAAG | 5 cut(s) | 58, 478, 812, 2223, 3357 |
| AcyI | GRCGYC | 1 cut(s) | 157 |
| AfaI | GTAC | 6 cut(s) | 505, 1071, 1470, 1746, 2827, 2864 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 191, 194, 689, 2755, 2977, 3398 |
| AflII | CTTAAG | 1 cut(s) | 2624 |
| AjiI | CACGTC | 1 cut(s) | 905 |
| AjnI | CCWGG | 6 cut(s) | 89, 198, 952, 1617, 1945, 3451 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2691, 2723 |
| Alw21I | GWGCWC | 2 cut(s) | 2430, 3623 |
| Alw26I | GTCTC | 8 cut(s) | 88, 859, 1116, 1668, 1888, 2109, 2524, 2849 |
| AlwI | GGATC | 4 cut(s) | 241, 482, 674, 944 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 90, 1163, 1439 |
| Ama87I | CYCGRG | 4 cut(s) | 972, 1351, 1627, 2068 |
| AoxI | GGCC | 9 cut(s) | 196, 1488, 3181, 3259, 3337, 3493, 3571, 3649, 3710 |
| ApeKI | GCWGC | 8 cut(s) | 588, 998, 2266, 2276, 2537, 2548, 2674, 3477 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 245, 277 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 3253, 3409 |
| Asp718I | GGTACC | 2 cut(s) | 1468, 1744 |
| AspLEI | GCGC | 4 cut(s) | 20, 288, 2377, 3638 |
| AspS9I | GGNCC | 3 cut(s) | 385, 1119, 2112 |
| AsuC2I | CCSGG | 2 cut(s) | 226, 2750 |
| AsuHPI | GGTGA | 6 cut(s) | 157, 349, 944, 1860, 2815, 3111 |
| AsuII | TTCGAA | 1 cut(s) | 3133 |
| AvaI | CYCGRG | 4 cut(s) | 972, 1351, 1627, 2068 |
| AvaII | GGWCC | 3 cut(s) | 385, 1119, 2112 |
| AxyI | CCTNAGG | 1 cut(s) | 2901 |
| BalI | TGGCCA | 2 cut(s) | 198, 3183 |
| BanI | GGYRCC | 2 cut(s) | 1468, 1744 |
| BanII | GRGCYC | 5 cut(s) | 82, 852, 1066, 1977, 2430 |
| BauI | CACGAG | 1 cut(s) | 859 |
| BbsI | GAAGAC | 2 cut(s) | 152, 2634 |
| Bbv12I | GWGCWC | 2 cut(s) | 2430, 3623 |
| BbvCI | CCTCAGC | 2 cut(s) | 324, 434 |
| BbvI | GCAGC | 8 cut(s) | 600, 985, 2263, 2278, 2535, 2549, 2661, 3489 |
| BccI | CCATC | 7 cut(s) | 223, 826, 1033, 1585, 1841, 2572, 2753 |
| BceAI | ACGGC | 1 cut(s) | 1374 |
| BciT130I | CCWGG | 6 cut(s) | 91, 200, 954, 1619, 1947, 3453 |
| BciVI | GTATCC | 2 cut(s) | 686, 1204 |
| BcnI | CCSGG | 2 cut(s) | 226, 2750 |
| BcoDI | GTCTC | 8 cut(s) | 88, 859, 1116, 1668, 1888, 2109, 2524, 2849 |
| BfaI | CTAG | 8 cut(s) | 1067, 1181, 1457, 2193, 2202, 3123, 3273, 3429 |
| BfmI | CTRYAG | 3 cut(s) | 2535, 2590, 3528 |
| BfrI | CTTAAG | 1 cut(s) | 2624 |
| BfuAI | ACCTGC | 5 cut(s) | 44, 1134, 1410, 1686, 2542 |
| BfuI | GTATCC | 2 cut(s) | 686, 1204 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 215, 2750 |
| BglII | AGATCT | 3 cut(s) | 2242, 2519, 2620 |
| BisI | GCNGC | 8 cut(s) | 589, 999, 2267, 2277, 2538, 2549, 2675, 3478 |
| BlpI | GCTNAGC | 1 cut(s) | 2429 |
| BlsI | GCNGC | 8 cut(s) | 590, 1000, 2268, 2278, 2539, 2550, 2676, 3479 |
| Bme1390I | CCNGG | 8 cut(s) | 91, 200, 226, 954, 1619, 1947, 2750, 3453 |
| Bme18I | GGWCC | 3 cut(s) | 385, 1119, 2112 |
| BmeT110I | CYCGRG | 4 cut(s) | 972, 1351, 1627, 2068 |
| BmgBI | CACGTC | 1 cut(s) | 905 |
| BmgT120I | GGNCC | 3 cut(s) | 385, 1119, 2112 |
| BmiI | GGNNCC | 5 cut(s) | 219, 387, 1470, 1746, 2367 |
| BmrFI | CCNGG | 8 cut(s) | 91, 200, 226, 954, 1619, 1947, 2750, 3453 |
| BmrI | ACTGGG | 4 cut(s) | 848, 1266, 1542, 2354 |
| BmsI | GCATC | 7 cut(s) | 268, 587, 2267, 2288, 2334, 2395, 2783 |
| BmuI | ACTGGG | 4 cut(s) | 848, 1266, 1542, 2354 |
| BpiI | GAAGAC | 2 cut(s) | 152, 2634 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 955, 987 |
| BpmI | CTGGAG | 4 cut(s) | 112, 759, 1287, 3435 |
| Bpu10I | CCTNAGC | 3 cut(s) | 324, 434, 2670 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2429 |
| Bpu14I | TTCGAA | 1 cut(s) | 3133 |
| BpuEI | CTTGAG | 4 cut(s) | 94, 294, 2807, 3559 |
| BpuMI | CCSGG | 2 cut(s) | 226, 2750 |
| BsaBI | GATNNNNATC | 2 cut(s) | 3054, 3726 |
| BsaHI | GRCGYC | 1 cut(s) | 157 |
| BsaI | GGTCTC | 1 cut(s) | 2524 |
| BsaJI | CCNNGG | 4 cut(s) | 768, 1617, 1945, 2694 |
| BsaWI | WCCGGW | 2 cut(s) | 167, 1708 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2846, 2876 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 191, 194, 689, 2755, 2977, 3398 |
| Bse118I | RCCGGY | 1 cut(s) | 1668 |
| Bse21I | CCTNAGG | 1 cut(s) | 2901 |
| Bse3DI | GCAATG | 5 cut(s) | 920, 1057, 1333, 1609, 1913 |
| Bse8I | GATNNNNATC | 2 cut(s) | 3054, 3726 |
| BseBI | CCWGG | 6 cut(s) | 91, 200, 954, 1619, 1947, 3453 |
| BseDI | CCNNGG | 4 cut(s) | 768, 1617, 1945, 2694 |
| BseGI | GGATG | 9 cut(s) | 234, 2410, 2583, 2690, 2745, 3052, 3284, 3440, 3518 |
| BseJI | GATNNNNATC | 2 cut(s) | 3054, 3726 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 191, 194, 689, 2755, 2977, 3398 |
| BseMI | GCAATG | 5 cut(s) | 920, 1057, 1333, 1609, 1913 |
| BseRI | GAGGAG | 3 cut(s) | 877, 2159, 2867 |
| BseXI | GCAGC | 8 cut(s) | 600, 985, 2263, 2278, 2535, 2549, 2661, 3489 |
| BseYI | CCCAGC | 6 cut(s) | 1412, 1505, 1688, 2129, 2657, 3292 |
| Bsh1236I | CGCG | 1 cut(s) | 3638 |
| BshFI | GGCC | 9 cut(s) | 198, 1490, 3183, 3261, 3339, 3495, 3573, 3651, 3712 |
| BshNI | GGYRCC | 2 cut(s) | 1468, 1744 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2430, 3623 |
| BsiHKCI | CYCGRG | 4 cut(s) | 972, 1351, 1627, 2068 |
| BsiSI | CCGG | 8 cut(s) | 168, 210, 226, 1669, 1709, 1820, 2750, 3687 |
| BslFI | GGGAC | 1 cut(s) | 350 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 191, 194, 689, 2755, 2977, 3398 |
| BsmAI | GTCTC | 8 cut(s) | 88, 859, 1116, 1668, 1888, 2109, 2524, 2849 |
| BsmBI | CGTCTC | 1 cut(s) | 2849 |
| BsmFI | GGGAC | 1 cut(s) | 350 |
| BsmI | GAATGC | 4 cut(s) | 2468, 3011, 3206, 3362 |
| BsnI | GGCC | 9 cut(s) | 198, 1490, 3183, 3261, 3339, 3495, 3573, 3651, 3712 |
| Bso31I | GGTCTC | 1 cut(s) | 2524 |
| BsoBI | CYCGRG | 4 cut(s) | 972, 1351, 1627, 2068 |
| Bsp119I | TTCGAA | 1 cut(s) | 3133 |
| Bsp1286I | GDGCHC | 6 cut(s) | 82, 852, 1066, 1977, 2430, 3623 |
| Bsp1407I | TGTACA | 2 cut(s) | 503, 2862 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2429 |
| BspACI | CCGC | 9 cut(s) | 185, 222, 703, 1860, 2783, 3399, 3480, 3606, 3638 |
| BspANI | GGCC | 9 cut(s) | 198, 1490, 3183, 3261, 3339, 3495, 3573, 3651, 3712 |
| BspFNI | CGCG | 1 cut(s) | 3638 |
| BspHI | TCATGA | 1 cut(s) | 2332 |
| BspLI | GGNNCC | 5 cut(s) | 219, 387, 1470, 1746, 2367 |
| BspMAI | CTGCAG | 2 cut(s) | 2539, 2594 |
| BspMI | ACCTGC | 5 cut(s) | 44, 1134, 1410, 1686, 2542 |
| BspPI | GGATC | 4 cut(s) | 241, 482, 674, 944 |
| BspQI | GCTCTTC | 2 cut(s) | 1054, 2880 |
| BspT104I | TTCGAA | 1 cut(s) | 3133 |
| BspT107I | GGYRCC | 2 cut(s) | 1468, 1744 |
| BspTI | CTTAAG | 1 cut(s) | 2624 |
| BspTNI | GGTCTC | 1 cut(s) | 2524 |
| BsrBI | CCGCTC | 1 cut(s) | 705 |
| BsrDI | GCAATG | 5 cut(s) | 920, 1057, 1333, 1609, 1913 |
| BsrFI | RCCGGY | 1 cut(s) | 1668 |
| BsrGI | TGTACA | 2 cut(s) | 503, 2862 |
| BssAI | RCCGGY | 1 cut(s) | 1668 |
| BssECI | CCNNGG | 4 cut(s) | 768, 1617, 1945, 2694 |
| BssNI | GRCGYC | 1 cut(s) | 157 |
| BssSI | CACGAG | 1 cut(s) | 859 |
| BssT1I | CCWWGG | 2 cut(s) | 768, 2694 |
| Bst2BI | CACGAG | 1 cut(s) | 859 |
| Bst2UI | CCWGG | 6 cut(s) | 91, 200, 954, 1619, 1947, 3453 |
| Bst6I | CTCTTC | 2 cut(s) | 1054, 2880 |
| BstACI | GRCGYC | 1 cut(s) | 157 |
| BstAFI | CTTAAG | 1 cut(s) | 2624 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 597 |
| BstAUI | TGTACA | 2 cut(s) | 503, 2862 |
| BstBI | TTCGAA | 1 cut(s) | 3133 |
| BstC8I | GCNNGC | 7 cut(s) | 2679, 2811, 2892, 3233, 3389, 3606, 3684 |
| BstF5I | GGATG | 9 cut(s) | 234, 2410, 2583, 2690, 2745, 3052, 3284, 3440, 3518 |
| BstFNI | CGCG | 1 cut(s) | 3638 |
| BstHHI | GCGC | 4 cut(s) | 20, 288, 2377, 3638 |
| BstMAI | GTCTC | 8 cut(s) | 88, 859, 1116, 1668, 1888, 2109, 2524, 2849 |
| BstNI | CCWGG | 6 cut(s) | 91, 200, 954, 1619, 1947, 3453 |
| BstNSI | RCATGY | 5 cut(s) | 1819, 2894, 3235, 3391, 3469 |
| BstSCI | CCNGG | 8 cut(s) | 89, 198, 224, 952, 1617, 1945, 2748, 3451 |
| BstSFI | CTRYAG | 3 cut(s) | 2535, 2590, 3528 |
| BstUI | CGCG | 1 cut(s) | 3638 |
| BstV1I | GCAGC | 8 cut(s) | 600, 985, 2263, 2278, 2535, 2549, 2661, 3489 |
| BstV2I | GAAGAC | 2 cut(s) | 152, 2634 |
| BstX2I | RGATCY | 6 cut(s) | 246, 679, 949, 2242, 2519, 2620 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 634, 3608 |
| BstYI | RGATCY | 6 cut(s) | 246, 679, 949, 2242, 2519, 2620 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2901 |
| BsuI | GTATCC | 2 cut(s) | 686, 1204 |
| BsuRI | GGCC | 9 cut(s) | 198, 1490, 3183, 3261, 3339, 3495, 3573, 3651, 3712 |
| BtrI | CACGTC | 1 cut(s) | 905 |
| BtsCI | GGATG | 9 cut(s) | 234, 2410, 2583, 2690, 2745, 3052, 3284, 3440, 3518 |
| BtsI | GCAGTG | 4 cut(s) | 3250, 3328, 3562, 3713 |
| BtsIMutI | CAGTG | 9 cut(s) | 1584, 2173, 2367, 2578, 2805, 3250, 3328, 3562, 3713 |
| BveI | ACCTGC | 5 cut(s) | 44, 1134, 1410, 1686, 2542 |
| Cac8I | GCNNGC | 7 cut(s) | 2679, 2811, 2892, 3233, 3389, 3606, 3684 |
| CaiI | CAGNNNCTG | 3 cut(s) | 90, 1163, 1439 |
| CciI | TCATGA | 1 cut(s) | 2332 |
| CfoI | GCGC | 4 cut(s) | 20, 288, 2377, 3638 |
| Cfr10I | RCCGGY | 1 cut(s) | 1668 |
| Cfr13I | GGNCC | 3 cut(s) | 385, 1119, 2112 |
| CseI | GACGC | 1 cut(s) | 146 |
| Csp6I | GTAC | 6 cut(s) | 504, 1070, 1469, 1745, 2826, 2863 |
| CviQI | GTAC | 6 cut(s) | 504, 1070, 1469, 1745, 2826, 2863 |
| DraI | TTTAAA | 1 cut(s) | 763 |
| EaeI | YGGCCR | 2 cut(s) | 196, 3181 |
| Eam1104I | CTCTTC | 2 cut(s) | 1054, 2880 |
| EarI | CTCTTC | 2 cut(s) | 1054, 2880 |
| Ecl136II | GAGCTC | 1 cut(s) | 2428 |
| Eco130I | CCWWGG | 2 cut(s) | 768, 2694 |
| Eco24I | GRGCYC | 5 cut(s) | 82, 852, 1066, 1977, 2430 |
| Eco31I | GGTCTC | 1 cut(s) | 2524 |
| Eco32I | GATATC | 1 cut(s) | 536 |
| Eco47I | GGWCC | 3 cut(s) | 385, 1119, 2112 |
| Eco53kI | GAGCTC | 1 cut(s) | 2428 |
| Eco57I | CTGAAG | 5 cut(s) | 58, 478, 812, 2223, 3357 |
| Eco81I | CCTNAGG | 1 cut(s) | 2901 |
| Eco88I | CYCGRG | 4 cut(s) | 972, 1351, 1627, 2068 |
| EcoICRI | GAGCTC | 1 cut(s) | 2428 |
| EcoRI | GAATTC | 4 cut(s) | 2462, 3199, 3355, 3589 |
| EcoRII | CCWGG | 6 cut(s) | 89, 198, 952, 1617, 1945, 3451 |
| EcoRV | GATATC | 1 cut(s) | 536 |
| EcoT14I | CCWWGG | 2 cut(s) | 768, 2694 |
| EcoT22I | ATGCAT | 2 cut(s) | 602, 760 |
| EcoT38I | GRGCYC | 5 cut(s) | 82, 852, 1066, 1977, 2430 |
| ErhI | CCWWGG | 2 cut(s) | 768, 2694 |
| Esp3I | CGTCTC | 1 cut(s) | 2849 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3063, 3095 |
| FaqI | GGGAC | 1 cut(s) | 350 |
| FauI | CCCGC | 5 cut(s) | 192, 229, 1853, 3473, 3613 |
| FauNDI | CATATG | 2 cut(s) | 48, 2938 |
| FblI | GTMKAC | 2 cut(s) | 1212, 1623 |
| Fnu4HI | GCNGC | 8 cut(s) | 589, 999, 2267, 2277, 2538, 2549, 2675, 3478 |
| FokI | GGATG | 9 cut(s) | 241, 2417, 2590, 2677, 2732, 3059, 3271, 3427, 3505 |
| FriOI | GRGCYC | 5 cut(s) | 82, 852, 1066, 1977, 2430 |
| Fsp4HI | GCNGC | 8 cut(s) | 589, 999, 2267, 2277, 2538, 2549, 2675, 3478 |
| FspBI | CTAG | 8 cut(s) | 1067, 1181, 1457, 2193, 2202, 3123, 3273, 3429 |
| GlaI | GCGC | 4 cut(s) | 19, 287, 2376, 3637 |
| GluI | GCNGC | 8 cut(s) | 589, 999, 2267, 2277, 2538, 2549, 2675, 3478 |
| GsaI | CCCAGC | 6 cut(s) | 1416, 1509, 1692, 2133, 2661, 3296 |
| GsuI | CTGGAG | 4 cut(s) | 112, 759, 1287, 3435 |
| HaeIII | GGCC | 9 cut(s) | 198, 1490, 3183, 3261, 3339, 3495, 3573, 3651, 3712 |
| HapII | CCGG | 8 cut(s) | 168, 210, 226, 1669, 1709, 1820, 2750, 3687 |
| HgaI | GACGC | 1 cut(s) | 146 |
| HhaI | GCGC | 4 cut(s) | 20, 288, 2377, 3638 |
| Hin1I | GRCGYC | 1 cut(s) | 157 |
| Hin6I | GCGC | 4 cut(s) | 18, 286, 2375, 3636 |
| HinP1I | GCGC | 4 cut(s) | 18, 286, 2375, 3636 |
| HincII | GTYRAC | 2 cut(s) | 2569, 3419 |
| HindII | GTYRAC | 2 cut(s) | 2569, 3419 |
| HindIII | AAGCTT | 4 cut(s) | 1444, 1652, 2807, 3691 |
| HpaII | CCGG | 8 cut(s) | 168, 210, 226, 1669, 1709, 1820, 2750, 3687 |
| HphI | GGTGA | 6 cut(s) | 157, 349, 944, 1860, 2815, 3111 |
| Hpy166II | GTNNAC | 8 cut(s) | 385, 1072, 1213, 1624, 2171, 2251, 2569, 3419 |
| Hpy8I | GTNNAC | 8 cut(s) | 385, 1072, 1213, 1624, 2171, 2251, 2569, 3419 |
| Hpy99I | CGWCG | 3 cut(s) | 1119, 1395, 2112 |
| HpyCH4IV | ACGT | 5 cut(s) | 904, 2046, 2226, 2858, 3459 |
| HpySE526I | ACGT | 5 cut(s) | 904, 2046, 2226, 2858, 3459 |
| Hsp92I | GRCGYC | 1 cut(s) | 157 |
| HspAI | GCGC | 4 cut(s) | 18, 286, 2375, 3636 |
| KpnI | GGTACC | 2 cut(s) | 1472, 1748 |
| LguI | GCTCTTC | 2 cut(s) | 1054, 2880 |
| LmnI | GCTCC | 8 cut(s) | 223, 430, 710, 1140, 1416, 1692, 2062, 2191 |
| Lsp1109I | GCAGC | 8 cut(s) | 600, 985, 2263, 2278, 2535, 2549, 2661, 3489 |
| LweI | GCATC | 7 cut(s) | 268, 587, 2267, 2288, 2334, 2395, 2783 |
| MaeI | CTAG | 8 cut(s) | 1067, 1181, 1457, 2193, 2202, 3123, 3273, 3429 |
| MaeII | ACGT | 5 cut(s) | 904, 2046, 2226, 2858, 3459 |
| MaeIII | GTNAC | 5 cut(s) | 479, 619, 856, 1176, 3062 |
| MbiI | CCGCTC | 1 cut(s) | 705 |
| MfeI | CAATTG | 1 cut(s) | 2349 |
| MflI | RGATCY | 6 cut(s) | 246, 679, 949, 2242, 2519, 2620 |
| MhlI | GDGCHC | 6 cut(s) | 82, 852, 1066, 1977, 2430, 3623 |
| MlsI | TGGCCA | 2 cut(s) | 198, 3183 |
| MluNI | TGGCCA | 2 cut(s) | 198, 3183 |
| MlyI | GAGTC | 6 cut(s) | 680, 985, 1343, 1619, 1978, 3013 |
| MmeI | TCCRAC | 6 cut(s) | 401, 442, 1404, 1540, 1680, 2213 |
| Mox20I | TGGCCA | 2 cut(s) | 198, 3183 |
| Mph1103I | ATGCAT | 2 cut(s) | 602, 760 |
| MroXI | GAANNNNTTC | 2 cut(s) | 3253, 3409 |
| MscI | TGGCCA | 2 cut(s) | 198, 3183 |
| MslI | CAYNNNNRTG | 4 cut(s) | 626, 833, 1313, 1589 |
| Msp20I | TGGCCA | 2 cut(s) | 198, 3183 |
| MspA1I | CMGCKG | 5 cut(s) | 1505, 1781, 2540, 3480, 3608 |
| MspCI | CTTAAG | 1 cut(s) | 2624 |
| MspI | CCGG | 8 cut(s) | 168, 210, 226, 1669, 1709, 1820, 2750, 3687 |
| MspR9I | CCNGG | 8 cut(s) | 91, 200, 226, 954, 1619, 1947, 2750, 3453 |
| MunI | CAATTG | 1 cut(s) | 2349 |
| Mva1269I | GAATGC | 4 cut(s) | 2468, 3011, 3206, 3362 |
| MvaI | CCWGG | 6 cut(s) | 91, 200, 954, 1619, 1947, 3453 |
| MvnI | CGCG | 1 cut(s) | 3638 |
| NciI | CCSGG | 2 cut(s) | 226, 2750 |
| NdeI | CATATG | 2 cut(s) | 48, 2938 |
| NlaIV | GGNNCC | 5 cut(s) | 219, 387, 1470, 1746, 2367 |
| NmuCI | GTSAC | 2 cut(s) | 619, 856 |
| NsiI | ATGCAT | 2 cut(s) | 602, 760 |
| NspI | RCATGY | 5 cut(s) | 1819, 2894, 3235, 3391, 3469 |
| NspV | TTCGAA | 1 cut(s) | 3133 |
| PaeI | GCATGC | 3 cut(s) | 2894, 3235, 3391 |
| PaeR7I | CTCGAG | 4 cut(s) | 972, 1351, 1627, 2068 |
| PagI | TCATGA | 1 cut(s) | 2332 |
| PciSI | GCTCTTC | 2 cut(s) | 1054, 2880 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2707 |
| PctI | GAATGC | 4 cut(s) | 2468, 3011, 3206, 3362 |
| PdmI | GAANNNNTTC | 2 cut(s) | 3253, 3409 |
| PfeI | GAWTC | 5 cut(s) | 2947, 2981, 3277, 3433, 3511 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 194 |
| PfoI | TCCNGGA | 1 cut(s) | 3451 |
| PkrI | GCNGC | 8 cut(s) | 590, 1000, 2268, 2278, 2539, 2550, 2676, 3479 |
| PleI | GAGTC | 6 cut(s) | 680, 985, 1343, 1619, 1978, 3013 |
| PpsI | GAGTC | 6 cut(s) | 680, 985, 1343, 1619, 1978, 3013 |
| Psp124BI | GAGCTC | 1 cut(s) | 2430 |
| Psp6I | CCWGG | 6 cut(s) | 89, 198, 952, 1617, 1945, 3451 |
| PspFI | CCCAGC | 6 cut(s) | 1412, 1505, 1688, 2129, 2657, 3292 |
| PspGI | CCWGG | 6 cut(s) | 89, 198, 952, 1617, 1945, 3451 |
| PspN4I | GGNNCC | 5 cut(s) | 219, 387, 1470, 1746, 2367 |
| PspPI | GGNCC | 3 cut(s) | 385, 1119, 2112 |
| PspXI | VCTCGAGB | 3 cut(s) | 1351, 1627, 2068 |
| PstI | CTGCAG | 2 cut(s) | 2539, 2594 |
| PstNI | CAGNNNCTG | 3 cut(s) | 90, 1163, 1439 |
| PsuI | RGATCY | 6 cut(s) | 246, 679, 949, 2242, 2519, 2620 |
| PvuII | CAGCTG | 3 cut(s) | 1505, 1781, 2540 |
| RsaI | GTAC | 6 cut(s) | 505, 1071, 1470, 1746, 2827, 2864 |
| RsaNI | GTAC | 6 cut(s) | 504, 1070, 1469, 1745, 2826, 2863 |
| RseI | CAYNNNNRTG | 4 cut(s) | 626, 833, 1313, 1589 |
| SacI | GAGCTC | 1 cut(s) | 2430 |
| SapI | GCTCTTC | 2 cut(s) | 1054, 2880 |
| SatI | GCNGC | 8 cut(s) | 589, 999, 2267, 2277, 2538, 2549, 2675, 3478 |
| Sau96I | GGNCC | 3 cut(s) | 385, 1119, 2112 |
| SchI | GAGTC | 6 cut(s) | 680, 985, 1343, 1619, 1978, 3013 |
| ScrFI | CCNGG | 8 cut(s) | 91, 200, 226, 954, 1619, 1947, 2750, 3453 |
| SduI | GDGCHC | 6 cut(s) | 82, 852, 1066, 1977, 2430, 3623 |
| SfaNI | GCATC | 7 cut(s) | 268, 587, 2267, 2288, 2334, 2395, 2783 |
| SfcI | CTRYAG | 3 cut(s) | 2535, 2590, 3528 |
| Sfr274I | CTCGAG | 4 cut(s) | 972, 1351, 1627, 2068 |
| SfuI | TTCGAA | 1 cut(s) | 3133 |
| SinI | GGWCC | 3 cut(s) | 385, 1119, 2112 |
| SlaI | CTCGAG | 4 cut(s) | 972, 1351, 1627, 2068 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 626, 833, 1313, 1589 |
| SmlI | CTYRAG | 9 cut(s) | 109, 309, 972, 1351, 1627, 2068, 2624, 2786, 3538 |
| SmoI | CTYRAG | 9 cut(s) | 109, 309, 972, 1351, 1627, 2068, 2624, 2786, 3538 |
| SphI | GCATGC | 3 cut(s) | 2894, 3235, 3391 |
| SsiI | CCGC | 9 cut(s) | 185, 222, 703, 1860, 2783, 3399, 3480, 3606, 3638 |
| SspI | AATATT | 1 cut(s) | 69 |
| SspMI | CTAG | 8 cut(s) | 1067, 1181, 1457, 2193, 2202, 3123, 3273, 3429 |
| SstI | GAGCTC | 1 cut(s) | 2430 |
| StyD4I | CCNGG | 8 cut(s) | 89, 198, 224, 952, 1617, 1945, 2748, 3451 |
| StyI | CCWWGG | 2 cut(s) | 768, 2694 |
| TaiI | ACGT | 5 cut(s) | 907, 2049, 2229, 2861, 3462 |
| TaqII | GACCGA | 2 cut(s) | 1107, 2100 |
| TatI | WGTACW | 4 cut(s) | 503, 1069, 2825, 2862 |
| TfiI | GAWTC | 5 cut(s) | 2947, 2981, 3277, 3433, 3511 |
| TscAI | CASTG | 9 cut(s) | 1591, 2173, 2367, 2578, 2805, 3250, 3328, 3562, 3713 |
| TseFI | GTSAC | 2 cut(s) | 619, 856 |
| TseI | GCWGC | 8 cut(s) | 588, 998, 2266, 2276, 2537, 2548, 2674, 3477 |
| Tsp45I | GTSAC | 2 cut(s) | 619, 856 |
| TspGWI | ACGGA | 3 cut(s) | 568, 620, 2993 |
| TspRI | CASTG | 9 cut(s) | 1591, 2173, 2367, 2578, 2805, 3250, 3328, 3562, 3713 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 194 |
| Vha464I | CTTAAG | 1 cut(s) | 2624 |
| VpaK11BI | GGWCC | 3 cut(s) | 385, 1119, 2112 |
| XceI | RCATGY | 5 cut(s) | 1819, 2894, 3235, 3391, 3469 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2752 |
| XhoI | CTCGAG | 4 cut(s) | 972, 1351, 1627, 2068 |
| XmiI | GTMKAC | 2 cut(s) | 1212, 1623 |
| XmnI | GAANNNNTTC | 2 cut(s) | 3253, 3409 |
| XspI | CTAG | 8 cut(s) | 1067, 1181, 1457, 2193, 2202, 3123, 3273, 3429 |
| Zsp2I | ATGCAT | 2 cut(s) | 602, 760 |