Methyl-CpG binding domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G63240 |
| fragaria_vesca | FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01911 FvH4_5g01911 |
| malus_domestica | MD06G1076800.v1.1 MD14G1098200.v1.1 |
| prunus_persica | Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 |
| pyrus_communis | pycom06g07430 pycom06g07440 pycom14g09640 |
| rosa_chinensis | RchiOBHm_Chr7g0198611 RchiOBHm_Chr7g0198661 |
| rosa_laevigata | RLG00000003850 RLG00000003857 |
| rosa_multiflora | Rmu_co8077932.1_g000001 Rmu_co8274787.1_g000001 Rmu_co8506873.1_g000001 Rmu_sc0000220.1_g000017 Rmu_sc0004229.1_g000004 |
| rosa_roxburghii | Rroxscaffold_3G00257550 Rroxscaffold_3G00257620 |
| rosa_rugosa | Rorug07G0048500 Rorug07G0049000 Rorug07G0049100 Rorug07G0049100 |
| rosa_samantha | Rh4BG123200 Rh7AG172000 Rh7AG172600 Rh7BG175400 Rh7BG176100 Rh7CG181500 Rh7CG182000 Rh7DG174500 Rh7DG174900 Rh7DG175200 |
| rosa_wichuraiana | Rw7G015090 Rw7G015150 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 1905, 1933 |
| Acc36I | ACCTGC | 5 cut(s) | 839, 1085, 1405, 1905, 1933 |
| AccB1I | GGYRCC | 1 cut(s) | 1411 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1832 |
| AccI | GTMKAC | 1 cut(s) | 687 |
| AciI | CCGC | 3 cut(s) | 76, 1009, 1928 |
| AclWI | GGATC | 5 cut(s) | 560, 1286, 1299, 1541, 1862 |
| AcsI | RAATTY | 5 cut(s) | 943, 1112, 1909, 1957, 2035 |
| AcuI | CTGAAG | 3 cut(s) | 108, 843, 957 |
| AfaI | GTAC | 3 cut(s) | 792, 1555, 2092 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1360, 1705, 1832, 2108 |
| AflIII | ACRYGT | 1 cut(s) | 1860 |
| AhlI | ACTAGT | 1 cut(s) | 304 |
| AjnI | CCWGG | 4 cut(s) | 71, 568, 777, 1888 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1667, 1699 |
| Alw21I | GWGCWC | 1 cut(s) | 883 |
| Alw26I | GTCTC | 3 cut(s) | 270, 434, 514 |
| AlwI | GGATC | 5 cut(s) | 560, 1286, 1299, 1541, 1862 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 569 |
| Ama87I | CYCGRG | 2 cut(s) | 1157, 2077 |
| AoxI | GGCC | 3 cut(s) | 115, 922, 2064 |
| ApeKI | GCWGC | 9 cut(s) | 79, 809, 1135, 1400, 1431, 1434, 1622, 1664, 1900 |
| ApoI | RAATTY | 5 cut(s) | 943, 1112, 1909, 1957, 2035 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1316, 1348, 1718, 1750 |
| AspS9I | GGNCC | 4 cut(s) | 366, 732, 1716, 2064 |
| AsuC2I | CCSGG | 1 cut(s) | 1706 |
| AsuHPI | GGTGA | 2 cut(s) | 1088, 1830 |
| AsuII | TTCGAA | 1 cut(s) | 1589 |
| AvaI | CYCGRG | 2 cut(s) | 1157, 2077 |
| AvaII | GGWCC | 3 cut(s) | 366, 732, 1716 |
| BamHI | GGATCC | 1 cut(s) | 1291 |
| BanI | GGYRCC | 1 cut(s) | 1411 |
| BauI | CACGAG | 1 cut(s) | 646 |
| BbsI | GAAGAC | 2 cut(s) | 384, 1329 |
| Bbv12I | GWGCWC | 1 cut(s) | 883 |
| BbvCI | CCTCAGC | 1 cut(s) | 411 |
| BbvI | GCAGC | 9 cut(s) | 91, 821, 1147, 1412, 1418, 1446, 1609, 1651, 1887 |
| BccI | CCATC | 5 cut(s) | 545, 649, 827, 1481, 1805 |
| BceAI | ACGGC | 1 cut(s) | 22 |
| BciT130I | CCWGG | 4 cut(s) | 73, 570, 779, 1890 |
| BciVI | GTATCC | 2 cut(s) | 1270, 1702 |
| BcnI | CCSGG | 1 cut(s) | 1706 |
| BcoDI | GTCTC | 3 cut(s) | 270, 434, 514 |
| BcuI | ACTAGT | 1 cut(s) | 304 |
| BfaI | CTAG | 6 cut(s) | 32, 209, 305, 822, 1068, 1842 |
| BfmI | CTRYAG | 7 cut(s) | 1004, 1133, 1398, 1432, 1459, 1482, 1974 |
| BfuAI | ACCTGC | 5 cut(s) | 839, 1085, 1405, 1905, 1933 |
| BfuI | GTATCC | 2 cut(s) | 1270, 1702 |
| Bme1390I | CCNGG | 5 cut(s) | 73, 570, 779, 1706, 1890 |
| Bme18I | GGWCC | 3 cut(s) | 366, 732, 1716 |
| BmeT110I | CYCGRG | 2 cut(s) | 1157, 2077 |
| BmgT120I | GGNCC | 4 cut(s) | 366, 732, 1716, 2064 |
| BmiI | GGNNCC | 8 cut(s) | 189, 556, 1030, 1251, 1293, 1413, 1616, 2065 |
| BmrFI | CCNGG | 5 cut(s) | 73, 570, 779, 1706, 1890 |
| BmrI | ACTGGG | 2 cut(s) | 1368, 1434 |
| BmsI | GCATC | 7 cut(s) | 13, 835, 889, 1069, 1081, 1136, 1511 |
| BmuI | ACTGGG | 2 cut(s) | 1368, 1434 |
| BoxI | GACNNNNGTC | 1 cut(s) | 159 |
| BpiI | GAAGAC | 2 cut(s) | 384, 1329 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1820, 1852 |
| Bpu10I | CCTNAGC | 1 cut(s) | 411 |
| Bpu14I | TTCGAA | 1 cut(s) | 1589 |
| BpuMI | CCSGG | 1 cut(s) | 1706 |
| BsaI | GGTCTC | 1 cut(s) | 270 |
| BsaJI | CCNNGG | 3 cut(s) | 468, 1023, 1888 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1360, 1705, 1832, 2108 |
| Bse1I | ACTGG | 4 cut(s) | 767, 1083, 1363, 1429 |
| Bse3DI | GCAATG | 1 cut(s) | 2008 |
| BseBI | CCWGG | 4 cut(s) | 73, 570, 779, 1890 |
| BseDI | CCNNGG | 3 cut(s) | 468, 1023, 1888 |
| BseGI | GGATG | 9 cut(s) | 140, 838, 904, 1328, 1473, 1694, 1771, 1964, 2069 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1360, 1705, 1832, 2108 |
| BseMI | GCAATG | 1 cut(s) | 2008 |
| BseMII | CTCAG | 8 cut(s) | 189, 216, 402, 429, 1287, 1318, 1520, 1647 |
| BseNI | ACTGG | 4 cut(s) | 767, 1083, 1363, 1429 |
| BseXI | GCAGC | 9 cut(s) | 91, 821, 1147, 1412, 1418, 1446, 1609, 1651, 1887 |
| BseYI | CCCAGC | 2 cut(s) | 749, 1968 |
| BshFI | GGCC | 3 cut(s) | 117, 924, 2066 |
| BshNI | GGYRCC | 1 cut(s) | 1411 |
| BsiHKAI | GWGCWC | 1 cut(s) | 883 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1157, 2077 |
| BsiSI | CCGG | 1 cut(s) | 1706 |
| BslFI | GGGAC | 4 cut(s) | 13, 273, 404, 1871 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1360, 1705, 1832, 2108 |
| BsmAI | GTCTC | 3 cut(s) | 270, 434, 514 |
| BsmFI | GGGAC | 4 cut(s) | 13, 273, 404, 1871 |
| BsnI | GGCC | 3 cut(s) | 117, 924, 2066 |
| Bso31I | GGTCTC | 1 cut(s) | 270 |
| BsoBI | CYCGRG | 2 cut(s) | 1157, 2077 |
| Bsp119I | TTCGAA | 1 cut(s) | 1589 |
| Bsp1286I | GDGCHC | 1 cut(s) | 883 |
| Bsp1407I | TGTACA | 1 cut(s) | 790 |
| Bsp143I | GATC | 6 cut(s) | 565, 865, 1291, 1546, 1738, 1867 |
| BspACI | CCGC | 3 cut(s) | 76, 1009, 1928 |
| BspANI | GGCC | 3 cut(s) | 117, 924, 2066 |
| BspCNI | CTCAG | 8 cut(s) | 190, 217, 403, 430, 1288, 1317, 1519, 1648 |
| BspHI | TCATGA | 1 cut(s) | 1576 |
| BspLI | GGNNCC | 8 cut(s) | 189, 556, 1030, 1251, 1293, 1413, 1616, 2065 |
| BspMAI | CTGCAG | 4 cut(s) | 1137, 1402, 1436, 1978 |
| BspMI | ACCTGC | 5 cut(s) | 839, 1085, 1405, 1905, 1933 |
| BspPI | GGATC | 5 cut(s) | 560, 1286, 1299, 1541, 1862 |
| BspT104I | TTCGAA | 1 cut(s) | 1589 |
| BspT107I | GGYRCC | 1 cut(s) | 1411 |
| BspTNI | GGTCTC | 1 cut(s) | 270 |
| BsrDI | GCAATG | 1 cut(s) | 2008 |
| BsrGI | TGTACA | 1 cut(s) | 790 |
| BsrI | ACTGG | 4 cut(s) | 767, 1083, 1363, 1429 |
| BssECI | CCNNGG | 3 cut(s) | 468, 1023, 1888 |
| BssMI | GATC | 6 cut(s) | 565, 865, 1291, 1546, 1738, 1867 |
| BssSI | CACGAG | 1 cut(s) | 646 |
| BssT1I | CCWWGG | 2 cut(s) | 468, 1023 |
| Bst2BI | CACGAG | 1 cut(s) | 646 |
| Bst2UI | CCWGG | 4 cut(s) | 73, 570, 779, 1890 |
| Bst4CI | ACNGT | 4 cut(s) | 294, 790, 1683, 2025 |
| Bst6I | CTCTTC | 3 cut(s) | 1050, 1200, 1573 |
| BstAUI | TGTACA | 1 cut(s) | 790 |
| BstBI | TTCGAA | 1 cut(s) | 1589 |
| BstC8I | GCNNGC | 2 cut(s) | 922, 1974 |
| BstF5I | GGATG | 9 cut(s) | 140, 838, 904, 1328, 1473, 1694, 1771, 1964, 2069 |
| BstKTI | GATC | 6 cut(s) | 568, 868, 1294, 1549, 1741, 1870 |
| BstMAI | GTCTC | 3 cut(s) | 270, 434, 514 |
| BstMBI | GATC | 6 cut(s) | 565, 865, 1291, 1546, 1738, 1867 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 854, 1478, 1499, 1842, 2112 |
| BstNI | CCWGG | 4 cut(s) | 73, 570, 779, 1890 |
| BstNSI | RCATGY | 1 cut(s) | 1864 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 159 |
| BstSCI | CCNGG | 5 cut(s) | 71, 568, 777, 1704, 1888 |
| BstSFI | CTRYAG | 7 cut(s) | 1004, 1133, 1398, 1432, 1459, 1482, 1974 |
| BstV1I | GCAGC | 9 cut(s) | 91, 821, 1147, 1412, 1418, 1446, 1609, 1651, 1887 |
| BstV2I | GAAGAC | 2 cut(s) | 384, 1329 |
| BstX2I | RGATCY | 2 cut(s) | 565, 1291 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1811 |
| BstYI | RGATCY | 2 cut(s) | 565, 1291 |
| BsuI | GTATCC | 2 cut(s) | 1270, 1702 |
| BsuRI | GGCC | 3 cut(s) | 117, 924, 2066 |
| BtsCI | GGATG | 9 cut(s) | 140, 838, 904, 1328, 1473, 1694, 1771, 1964, 2069 |
| BtsI | GCAGTG | 1 cut(s) | 1820 |
| BtsIMutI | CAGTG | 1 cut(s) | 1820 |
| BveI | ACCTGC | 5 cut(s) | 839, 1085, 1405, 1905, 1933 |
| Cac8I | GCNNGC | 2 cut(s) | 922, 1974 |
| CaiI | CAGNNNCTG | 1 cut(s) | 569 |
| CciI | TCATGA | 1 cut(s) | 1576 |
| Cfr13I | GGNCC | 4 cut(s) | 366, 732, 1716, 2064 |
| CsiI | ACCWGGT | 1 cut(s) | 777 |
| Csp6I | GTAC | 3 cut(s) | 791, 1554, 2091 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2062, 2097 |
| CviAII | CATG | 9 cut(s) | 109, 175, 1496, 1577, 1610, 1861, 1906, 1954, 2032 |
| CviQI | GTAC | 3 cut(s) | 791, 1554, 2091 |
| DpnI | GATC | 6 cut(s) | 567, 867, 1293, 1548, 1740, 1869 |
| DpnII | GATC | 6 cut(s) | 565, 865, 1291, 1546, 1738, 1867 |
| Eam1104I | CTCTTC | 3 cut(s) | 1050, 1200, 1573 |
| EarI | CTCTTC | 3 cut(s) | 1050, 1200, 1573 |
| Eco130I | CCWWGG | 2 cut(s) | 468, 1023 |
| Eco31I | GGTCTC | 1 cut(s) | 270 |
| Eco47I | GGWCC | 3 cut(s) | 366, 732, 1716 |
| Eco57I | CTGAAG | 3 cut(s) | 108, 843, 957 |
| Eco88I | CYCGRG | 2 cut(s) | 1157, 2077 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2064 |
| EcoRI | GAATTC | 3 cut(s) | 1909, 1957, 2035 |
| EcoRII | CCWGG | 4 cut(s) | 71, 568, 777, 1888 |
| EcoT14I | CCWWGG | 2 cut(s) | 468, 1023 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 904 |
| ErhI | CCWWGG | 2 cut(s) | 468, 1023 |
| FaeI | CATG | 9 cut(s) | 112, 178, 1499, 1580, 1613, 1864, 1909, 1957, 2035 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 567, 599, 2090, 2122 |
| FaqI | GGGAC | 4 cut(s) | 13, 273, 404, 1871 |
| FatI | CATG | 9 cut(s) | 108, 174, 1495, 1576, 1609, 1860, 1905, 1953, 2031 |
| FauNDI | CATATG | 1 cut(s) | 1201 |
| FblI | GTMKAC | 1 cut(s) | 687 |
| FokI | GGATG | 9 cut(s) | 127, 845, 911, 1315, 1460, 1681, 1778, 1951, 2056 |
| FspBI | CTAG | 6 cut(s) | 32, 209, 305, 822, 1068, 1842 |
| GsaI | CCCAGC | 2 cut(s) | 753, 1972 |
| HaeIII | GGCC | 3 cut(s) | 117, 924, 2066 |
| HapII | CCGG | 1 cut(s) | 1706 |
| Hin1II | CATG | 9 cut(s) | 112, 178, 1499, 1580, 1613, 1864, 1909, 1957, 2035 |
| HindIII | AAGCTT | 2 cut(s) | 61, 518 |
| HpaII | CCGG | 1 cut(s) | 1706 |
| HphI | GGTGA | 2 cut(s) | 1088, 1830 |
| Hpy166II | GTNNAC | 2 cut(s) | 688, 2093 |
| Hpy8I | GTNNAC | 2 cut(s) | 688, 2093 |
| Hpy99I | CGWCG | 1 cut(s) | 732 |
| HpyAV | CCTTC | 7 cut(s) | 7, 518, 669, 986, 1528, 1654, 2048 |
| HpyCH4III | ACNGT | 4 cut(s) | 294, 790, 1683, 2025 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 854, 1478, 1499, 1842, 2112 |
| Hsp92II | CATG | 9 cut(s) | 112, 178, 1499, 1580, 1613, 1864, 1909, 1957, 2035 |
| Kzo9I | GATC | 6 cut(s) | 565, 865, 1291, 1546, 1738, 1867 |
| LmnI | GCTCC | 4 cut(s) | 193, 1124, 1428, 1633 |
| Lsp1109I | GCAGC | 9 cut(s) | 91, 821, 1147, 1412, 1418, 1446, 1609, 1651, 1887 |
| LweI | GCATC | 7 cut(s) | 13, 835, 889, 1069, 1081, 1136, 1511 |
| MabI | ACCWGGT | 1 cut(s) | 777 |
| MaeI | CTAG | 6 cut(s) | 32, 209, 305, 822, 1068, 1842 |
| MaeIII | GTNAC | 4 cut(s) | 46, 130, 492, 678 |
| MalI | GATC | 6 cut(s) | 567, 867, 1293, 1548, 1740, 1869 |
| MboI | GATC | 6 cut(s) | 565, 865, 1291, 1546, 1738, 1867 |
| MflI | RGATCY | 2 cut(s) | 565, 1291 |
| MhlI | GDGCHC | 1 cut(s) | 883 |
| MlyI | GAGTC | 9 cut(s) | 169, 601, 658, 1073, 1169, 1184, 1217, 1319, 1762 |
| MmeI | TCCRAC | 4 cut(s) | 1056, 1254, 1665, 2097 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 904 |
| MseI | TTAA | 4 cut(s) | 65, 221, 450, 717 |
| MspA1I | CMGCKG | 3 cut(s) | 395, 1009, 1403 |
| MspI | CCGG | 1 cut(s) | 1706 |
| MspR9I | CCNGG | 5 cut(s) | 73, 570, 779, 1706, 1890 |
| MvaI | CCWGG | 4 cut(s) | 73, 570, 779, 1890 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 854, 1478, 1499, 1842, 2112 |
| NciI | CCSGG | 1 cut(s) | 1706 |
| NdeI | CATATG | 1 cut(s) | 1201 |
| NdeII | GATC | 6 cut(s) | 565, 865, 1291, 1546, 1738, 1867 |
| NlaIII | CATG | 9 cut(s) | 112, 178, 1499, 1580, 1613, 1864, 1909, 1957, 2035 |
| NlaIV | GGNNCC | 8 cut(s) | 189, 556, 1030, 1251, 1293, 1413, 1616, 2065 |
| NmeAIII | GCCGAG | 1 cut(s) | 1796 |
| NmuCI | GTSAC | 1 cut(s) | 678 |
| NsiI | ATGCAT | 2 cut(s) | 6, 904 |
| NspI | RCATGY | 1 cut(s) | 1864 |
| NspV | TTCGAA | 1 cut(s) | 1589 |
| PaeR7I | CTCGAG | 1 cut(s) | 2077 |
| PagI | TCATGA | 1 cut(s) | 1576 |
| PaqCI | CACCTGC | 2 cut(s) | 1905, 1933 |
| PciI | ACATGT | 1 cut(s) | 1860 |
| PfeI | GAWTC | 8 cut(s) | 229, 242, 580, 1019, 1487, 1583, 1675, 1721 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1832 |
| PfoI | TCCNGGA | 1 cut(s) | 1704 |
| PleI | GAGTC | 9 cut(s) | 168, 601, 657, 1072, 1168, 1184, 1216, 1319, 1761 |
| PpsI | GAGTC | 9 cut(s) | 168, 601, 657, 1072, 1168, 1184, 1216, 1319, 1761 |
| PscI | ACATGT | 1 cut(s) | 1860 |
| PshAI | GACNNNNGTC | 1 cut(s) | 159 |
| Psp6I | CCWGG | 4 cut(s) | 71, 568, 777, 1888 |
| PspFI | CCCAGC | 2 cut(s) | 749, 1968 |
| PspGI | CCWGG | 4 cut(s) | 71, 568, 777, 1888 |
| PspN4I | GGNNCC | 8 cut(s) | 189, 556, 1030, 1251, 1293, 1413, 1616, 2065 |
| PspPI | GGNCC | 4 cut(s) | 366, 732, 1716, 2064 |
| PspXI | VCTCGAGB | 1 cut(s) | 2077 |
| PstI | CTGCAG | 4 cut(s) | 1137, 1402, 1436, 1978 |
| PstNI | CAGNNNCTG | 1 cut(s) | 569 |
| PsuI | RGATCY | 2 cut(s) | 565, 1291 |
| PvuII | CAGCTG | 2 cut(s) | 395, 1403 |
| RsaI | GTAC | 3 cut(s) | 792, 1555, 2092 |
| RsaNI | GTAC | 3 cut(s) | 791, 1554, 2091 |
| SaqAI | TTAA | 4 cut(s) | 65, 221, 450, 717 |
| Sau3AI | GATC | 6 cut(s) | 565, 865, 1291, 1546, 1738, 1867 |
| Sau96I | GGNCC | 4 cut(s) | 366, 732, 1716, 2064 |
| SbfI | CCTGCAGG | 1 cut(s) | 1978 |
| SchI | GAGTC | 9 cut(s) | 169, 601, 658, 1073, 1169, 1184, 1217, 1319, 1762 |
| ScrFI | CCNGG | 5 cut(s) | 73, 570, 779, 1706, 1890 |
| SdaI | CCTGCAGG | 1 cut(s) | 1978 |
| SduI | GDGCHC | 1 cut(s) | 883 |
| SexAI | ACCWGGT | 1 cut(s) | 777 |
| SfaNI | GCATC | 7 cut(s) | 13, 835, 889, 1069, 1081, 1136, 1511 |
| SfcI | CTRYAG | 7 cut(s) | 1004, 1133, 1398, 1432, 1459, 1482, 1974 |
| Sfr274I | CTCGAG | 1 cut(s) | 2077 |
| SfuI | TTCGAA | 1 cut(s) | 1589 |
| SinI | GGWCC | 3 cut(s) | 366, 732, 1716 |
| SlaI | CTCGAG | 1 cut(s) | 2077 |
| SmlI | CTYRAG | 1 cut(s) | 2077 |
| SmoI | CTYRAG | 1 cut(s) | 2077 |
| SpeI | ACTAGT | 1 cut(s) | 304 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1978 |
| SsiI | CCGC | 3 cut(s) | 76, 1009, 1928 |
| SspMI | CTAG | 6 cut(s) | 32, 209, 305, 822, 1068, 1842 |
| StyD4I | CCNGG | 5 cut(s) | 71, 568, 777, 1704, 1888 |
| StyI | CCWWGG | 2 cut(s) | 468, 1023 |
| TaaI | ACNGT | 4 cut(s) | 294, 790, 1683, 2025 |
| TaqI | TCGA | 5 cut(s) | 1087, 1318, 1589, 1671, 2078 |
| TaqII | GACCGA | 1 cut(s) | 720 |
| TatI | WGTACW | 2 cut(s) | 790, 1553 |
| TauI | GCSGC | 1 cut(s) | 79 |
| TfiI | GAWTC | 8 cut(s) | 229, 242, 580, 1019, 1487, 1583, 1675, 1721 |
| Tru1I | TTAA | 4 cut(s) | 65, 221, 450, 717 |
| Tru9I | TTAA | 4 cut(s) | 65, 221, 450, 717 |
| TscAI | CASTG | 1 cut(s) | 1827 |
| TseFI | GTSAC | 1 cut(s) | 678 |
| TseI | GCWGC | 9 cut(s) | 79, 809, 1135, 1400, 1431, 1434, 1622, 1664, 1900 |
| Tsp45I | GTSAC | 1 cut(s) | 678 |
| TspRI | CASTG | 1 cut(s) | 1827 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1832 |
| VpaK11BI | GGWCC | 3 cut(s) | 366, 732, 1716 |
| XapI | RAATTY | 5 cut(s) | 943, 1112, 1909, 1957, 2035 |
| XceI | RCATGY | 1 cut(s) | 1864 |
| XhoI | CTCGAG | 1 cut(s) | 2077 |
| XmiI | GTMKAC | 1 cut(s) | 687 |
| XspI | CTAG | 6 cut(s) | 32, 209, 305, 822, 1068, 1842 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 904 |