Methyl-CpG binding domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G63240 |
| fragaria_vesca | FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01911 FvH4_5g01911 |
| malus_domestica | MD06G1076800.v1.1 MD14G1098200.v1.1 |
| prunus_persica | Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 |
| pyrus_communis | pycom06g07430 pycom06g07440 pycom14g09640 |
| rosa_chinensis | RchiOBHm_Chr7g0198611 RchiOBHm_Chr7g0198661 |
| rosa_laevigata | RLG00000003850 RLG00000003857 |
| rosa_multiflora | Rmu_co8077932.1_g000001 Rmu_co8274787.1_g000001 Rmu_co8506873.1_g000001 Rmu_sc0000220.1_g000017 Rmu_sc0004229.1_g000004 |
| rosa_roxburghii | Rroxscaffold_3G00257550 Rroxscaffold_3G00257620 |
| rosa_rugosa | Rorug07G0048500 Rorug07G0049000 Rorug07G0049100 Rorug07G0049100 |
| rosa_samantha | Rh4BG123200 Rh7AG172000 Rh7AG172600 Rh7BG175400 Rh7BG176100 Rh7CG181500 Rh7CG182000 Rh7DG174500 Rh7DG174900 Rh7DG175200 |
| rosa_wichuraiana | Rw7G015090 Rw7G015150 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1146 |
| AarI | CACCTGC | 1 cut(s) | 1744 |
| Acc36I | ACCTGC | 3 cut(s) | 695, 902, 1744 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1459, 1547 |
| AccI | GTMKAC | 1 cut(s) | 752 |
| AciI | CCGC | 3 cut(s) | 69, 974, 1646 |
| AclWI | GGATC | 3 cut(s) | 437, 1144, 1352 |
| AcoI | YGGCCR | 2 cut(s) | 371, 1730 |
| AcsI | RAATTY | 3 cut(s) | 763, 1720, 1846 |
| AcuI | CTGAAG | 2 cut(s) | 777, 1365 |
| AfaI | GTAC | 3 cut(s) | 654, 916, 1366 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 812, 1159, 1459, 1524, 1547 |
| AflII | CTTAAG | 1 cut(s) | 29 |
| AflIII | ACRYGT | 1 cut(s) | 747 |
| AjiI | CACGTC | 1 cut(s) | 1524 |
| AjnI | CCWGG | 1 cut(s) | 445 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1490, 1522 |
| AluBI | AGCT | 9 cut(s) | 191, 274, 293, 668, 674, 1107, 1202, 1242, 1292 |
| AluI | AGCT | 9 cut(s) | 191, 274, 293, 668, 674, 1107, 1202, 1242, 1292 |
| Alw21I | GWGCWC | 1 cut(s) | 946 |
| Alw26I | GTCTC | 3 cut(s) | 174, 391, 1514 |
| AlwI | GGATC | 3 cut(s) | 437, 1144, 1352 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 446 |
| Ama87I | CYCGRG | 2 cut(s) | 1517, 1715 |
| AoxI | GGCC | 6 cut(s) | 371, 1266, 1473, 1526, 1730, 1875 |
| ApeKI | GCWGC | 9 cut(s) | 274, 491, 665, 668, 671, 1199, 1242, 1245, 1436 |
| ApoI | RAATTY | 3 cut(s) | 763, 1720, 1846 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1529, 1561 |
| AseI | ATTAAT | 1 cut(s) | 459 |
| AspS9I | GGNCC | 3 cut(s) | 267, 594, 1527 |
| AsuHPI | GGTGA | 3 cut(s) | 392, 905, 1642 |
| AsuNHI | GCTAGC | 1 cut(s) | 1552 |
| AvaI | CYCGRG | 2 cut(s) | 1517, 1715 |
| AvaII | GGWCC | 2 cut(s) | 267, 594 |
| BalI | TGGCCA | 1 cut(s) | 1732 |
| BanII | GRGCYC | 1 cut(s) | 806 |
| Bbv12I | GWGCWC | 1 cut(s) | 946 |
| BbvCI | CCTCAGC | 1 cut(s) | 1440 |
| BbvI | GCAGC | 9 cut(s) | 261, 478, 655, 677, 683, 1211, 1229, 1257, 1423 |
| BccI | CCATC | 3 cut(s) | 158, 422, 1608 |
| BciT130I | CCWGG | 1 cut(s) | 447 |
| BciVI | GTATCC | 2 cut(s) | 157, 1849 |
| BcoDI | GTCTC | 3 cut(s) | 174, 391, 1514 |
| BfaI | CTAG | 5 cut(s) | 113, 675, 698, 885, 1553 |
| BfmI | CTRYAG | 8 cut(s) | 669, 824, 1243, 1270, 1293, 1689, 1737, 1785 |
| BfrI | CTTAAG | 1 cut(s) | 29 |
| BfuAI | ACCTGC | 3 cut(s) | 695, 902, 1744 |
| BfuI | GTATCC | 2 cut(s) | 157, 1849 |
| BisI | GCNGC | 9 cut(s) | 275, 492, 666, 669, 672, 1200, 1243, 1246, 1437 |
| BlpI | GCTNAGC | 1 cut(s) | 1103 |
| BlsI | GCNGC | 9 cut(s) | 276, 493, 667, 670, 673, 1201, 1244, 1247, 1438 |
| Bme1390I | CCNGG | 1 cut(s) | 447 |
| Bme18I | GGWCC | 2 cut(s) | 267, 594 |
| BmeT110I | CYCGRG | 2 cut(s) | 1517, 1715 |
| BmgBI | CACGTC | 1 cut(s) | 1524 |
| BmgT120I | GGNCC | 3 cut(s) | 267, 594, 1527 |
| BmiI | GGNNCC | 3 cut(s) | 93, 433, 847 |
| BmrFI | CCNGG | 1 cut(s) | 447 |
| BmrI | ACTGGG | 3 cut(s) | 1167, 1245, 1700 |
| BmsI | GCATC | 8 cut(s) | 691, 746, 886, 898, 1089, 1293, 1322, 1603 |
| BmtI | GCTAGC | 1 cut(s) | 1556 |
| BmuI | ACTGGG | 3 cut(s) | 1167, 1245, 1700 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1460, 1492 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1440 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1103 |
| BpuEI | CTTGAG | 3 cut(s) | 1115, 1442, 1873 |
| BsaAI | YACGTR | 1 cut(s) | 750 |
| BsaI | GGTCTC | 1 cut(s) | 174 |
| BsaJI | CCNNGG | 3 cut(s) | 95, 309, 840 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1490, 1520, 1686, 1716 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 812, 1159, 1459, 1524, 1547 |
| Bse1I | ACTGG | 8 cut(s) | 141, 629, 684, 900, 1162, 1240, 1649, 1706 |
| Bse3DI | GCAATG | 3 cut(s) | 307, 550, 785 |
| BseBI | CCWGG | 1 cut(s) | 447 |
| BseDI | CCNNGG | 3 cut(s) | 95, 309, 840 |
| BseGI | GGATG | 3 cut(s) | 1284, 1775, 1853 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 812, 1159, 1459, 1524, 1547 |
| BseMI | GCAATG | 3 cut(s) | 307, 550, 785 |
| BseMII | CTCAG | 5 cut(s) | 327, 1074, 1117, 1431, 1691 |
| BseNI | ACTGG | 8 cut(s) | 141, 629, 684, 900, 1162, 1240, 1649, 1706 |
| BseRI | GAGGAG | 2 cut(s) | 1457, 1511 |
| BseXI | GCAGC | 9 cut(s) | 261, 478, 655, 677, 683, 1211, 1229, 1257, 1423 |
| BseYI | CCCAGC | 3 cut(s) | 611, 1639, 1779 |
| BsgI | GTGCAG | 2 cut(s) | 684, 935 |
| BshFI | GGCC | 6 cut(s) | 373, 1268, 1475, 1528, 1732, 1877 |
| BsiHKAI | GWGCWC | 1 cut(s) | 946 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1517, 1715 |
| BsiSI | CCGG | 1 cut(s) | 1866 |
| BslFI | GGGAC | 2 cut(s) | 51, 1688 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 812, 1159, 1459, 1524, 1547 |
| BsmAI | GTCTC | 3 cut(s) | 174, 391, 1514 |
| BsmBI | CGTCTC | 1 cut(s) | 1514 |
| BsmFI | GGGAC | 2 cut(s) | 51, 1688 |
| BsnI | GGCC | 6 cut(s) | 373, 1268, 1475, 1528, 1732, 1877 |
| Bso31I | GGTCTC | 1 cut(s) | 174 |
| BsoBI | CYCGRG | 2 cut(s) | 1517, 1715 |
| Bsp1286I | GDGCHC | 2 cut(s) | 806, 946 |
| Bsp1407I | TGTACA | 1 cut(s) | 652 |
| Bsp143I | GATC | 5 cut(s) | 221, 442, 721, 1149, 1357 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1103 |
| BspACI | CCGC | 3 cut(s) | 69, 974, 1646 |
| BspANI | GGCC | 6 cut(s) | 373, 1268, 1475, 1528, 1732, 1877 |
| BspCNI | CTCAG | 5 cut(s) | 328, 1075, 1116, 1432, 1690 |
| BspHI | TCATGA | 1 cut(s) | 1387 |
| BspLI | GGNNCC | 3 cut(s) | 93, 433, 847 |
| BspMAI | CTGCAG | 4 cut(s) | 673, 1247, 1741, 1789 |
| BspMI | ACCTGC | 3 cut(s) | 695, 902, 1744 |
| BspOI | GCTAGC | 1 cut(s) | 1556 |
| BspPI | GGATC | 3 cut(s) | 437, 1144, 1352 |
| BspTI | CTTAAG | 1 cut(s) | 29 |
| BspTNI | GGTCTC | 1 cut(s) | 174 |
| BsrDI | GCAATG | 3 cut(s) | 307, 550, 785 |
| BsrGI | TGTACA | 1 cut(s) | 652 |
| BsrI | ACTGG | 8 cut(s) | 141, 629, 684, 900, 1162, 1240, 1649, 1706 |
| BssECI | CCNNGG | 3 cut(s) | 95, 309, 840 |
| BssMI | GATC | 5 cut(s) | 221, 442, 721, 1149, 1357 |
| BssNAI | GTATAC | 1 cut(s) | 753 |
| BssT1I | CCWWGG | 2 cut(s) | 95, 840 |
| Bst1107I | GTATAC | 1 cut(s) | 753 |
| Bst2UI | CCWGG | 1 cut(s) | 447 |
| Bst4CI | ACNGT | 3 cut(s) | 652, 1034, 1758 |
| Bst6I | CTCTTC | 2 cut(s) | 345, 1384 |
| BstAFI | CTTAAG | 1 cut(s) | 29 |
| BstAUI | TGTACA | 1 cut(s) | 652 |
| BstBAI | YACGTR | 1 cut(s) | 750 |
| BstC8I | GCNNGC | 3 cut(s) | 1554, 1785, 1863 |
| BstDEI | CTNAG | 6 cut(s) | 102, 336, 1083, 1103, 1440, 1677 |
| BstF5I | GGATG | 3 cut(s) | 1284, 1775, 1853 |
| BstKTI | GATC | 5 cut(s) | 224, 445, 724, 1152, 1360 |
| BstMAI | GTCTC | 3 cut(s) | 174, 391, 1514 |
| BstMBI | GATC | 5 cut(s) | 221, 442, 721, 1149, 1357 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 665, 671, 1281, 1310, 1923 |
| BstNI | CCWGG | 1 cut(s) | 447 |
| BstNSI | RCATGY | 1 cut(s) | 1199 |
| BstSCI | CCNGG | 1 cut(s) | 445 |
| BstSFI | CTRYAG | 8 cut(s) | 669, 824, 1243, 1270, 1293, 1689, 1737, 1785 |
| BstV1I | GCAGC | 9 cut(s) | 261, 478, 655, 677, 683, 1211, 1229, 1257, 1423 |
| BstX2I | RGATCY | 2 cut(s) | 442, 1149 |
| BstYI | RGATCY | 2 cut(s) | 442, 1149 |
| BstZ17I | GTATAC | 1 cut(s) | 753 |
| BsuI | GTATCC | 2 cut(s) | 157, 1849 |
| BsuRI | GGCC | 6 cut(s) | 373, 1268, 1475, 1528, 1732, 1877 |
| BtrI | CACGTC | 1 cut(s) | 1524 |
| BtsCI | GGATG | 3 cut(s) | 1284, 1775, 1853 |
| BtsI | GCAGTG | 1 cut(s) | 1819 |
| BtsIMutI | CAGTG | 4 cut(s) | 648, 1039, 1713, 1819 |
| BveI | ACCTGC | 3 cut(s) | 695, 902, 1744 |
| Cac8I | GCNNGC | 3 cut(s) | 1554, 1785, 1863 |
| CaiI | CAGNNNCTG | 1 cut(s) | 446 |
| CciI | TCATGA | 1 cut(s) | 1387 |
| Cfr13I | GGNCC | 3 cut(s) | 267, 594, 1527 |
| Csp6I | GTAC | 3 cut(s) | 653, 915, 1365 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1795, 1830 |
| CviAII | CATG | 9 cut(s) | 818, 1019, 1128, 1196, 1307, 1388, 1610, 1765, 1843 |
| CviQI | GTAC | 3 cut(s) | 653, 915, 1365 |
| DdeI | CTNAG | 6 cut(s) | 102, 336, 1083, 1103, 1440, 1677 |
| DpnI | GATC | 5 cut(s) | 223, 444, 723, 1151, 1359 |
| DpnII | GATC | 5 cut(s) | 221, 442, 721, 1149, 1357 |
| EaeI | YGGCCR | 2 cut(s) | 371, 1730 |
| Eam1104I | CTCTTC | 2 cut(s) | 345, 1384 |
| EarI | CTCTTC | 2 cut(s) | 345, 1384 |
| Eco130I | CCWWGG | 2 cut(s) | 95, 840 |
| Eco147I | AGGCCT | 2 cut(s) | 1268, 1475 |
| Eco24I | GRGCYC | 1 cut(s) | 806 |
| Eco31I | GGTCTC | 1 cut(s) | 174 |
| Eco47I | GGWCC | 2 cut(s) | 267, 594 |
| Eco57I | CTGAAG | 2 cut(s) | 777, 1365 |
| Eco88I | CYCGRG | 2 cut(s) | 1517, 1715 |
| EcoRI | GAATTC | 2 cut(s) | 1720, 1846 |
| EcoRII | CCWGG | 1 cut(s) | 445 |
| EcoT14I | CCWWGG | 2 cut(s) | 95, 840 |
| EcoT22I | ATGCAT | 1 cut(s) | 1133 |
| EcoT38I | GRGCYC | 1 cut(s) | 806 |
| ErhI | CCWWGG | 2 cut(s) | 95, 840 |
| Esp3I | CGTCTC | 1 cut(s) | 1514 |
| FaeI | CATG | 9 cut(s) | 821, 1022, 1131, 1199, 1310, 1391, 1613, 1768, 1846 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 180, 212, 1901, 1933 |
| FaqI | GGGAC | 2 cut(s) | 51, 1688 |
| FatI | CATG | 9 cut(s) | 817, 1018, 1127, 1195, 1306, 1387, 1609, 1764, 1842 |
| FauI | CCCGC | 1 cut(s) | 76 |
| FauNDI | CATATG | 2 cut(s) | 376, 1699 |
| FblI | GTMKAC | 1 cut(s) | 752 |
| Fnu4HI | GCNGC | 9 cut(s) | 275, 492, 666, 669, 672, 1200, 1243, 1246, 1437 |
| FokI | GGATG | 3 cut(s) | 1271, 1762, 1840 |
| FriOI | GRGCYC | 1 cut(s) | 806 |
| Fsp4HI | GCNGC | 9 cut(s) | 275, 492, 666, 669, 672, 1200, 1243, 1246, 1437 |
| FspBI | CTAG | 5 cut(s) | 113, 675, 698, 885, 1553 |
| GluI | GCNGC | 9 cut(s) | 275, 492, 666, 669, 672, 1200, 1243, 1246, 1437 |
| GsaI | CCCAGC | 3 cut(s) | 615, 1643, 1783 |
| HaeIII | GGCC | 6 cut(s) | 373, 1268, 1475, 1528, 1732, 1877 |
| HapII | CCGG | 1 cut(s) | 1866 |
| Hin1II | CATG | 9 cut(s) | 821, 1022, 1131, 1199, 1310, 1391, 1613, 1768, 1846 |
| HpaII | CCGG | 1 cut(s) | 1866 |
| HphI | GGTGA | 3 cut(s) | 392, 905, 1642 |
| Hpy166II | GTNNAC | 2 cut(s) | 753, 1750 |
| Hpy8I | GTNNAC | 2 cut(s) | 753, 1750 |
| HpyAV | CCTTC | 6 cut(s) | 395, 526, 562, 806, 1339, 1465 |
| HpyCH4III | ACNGT | 3 cut(s) | 652, 1034, 1758 |
| HpyCH4IV | ACGT | 3 cut(s) | 749, 954, 1523 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 665, 671, 1281, 1310, 1923 |
| HpyF3I | CTNAG | 6 cut(s) | 102, 336, 1083, 1103, 1440, 1677 |
| HpySE526I | ACGT | 3 cut(s) | 749, 954, 1523 |
| Hsp92II | CATG | 9 cut(s) | 821, 1022, 1131, 1199, 1310, 1391, 1613, 1768, 1846 |
| Kzo9I | GATC | 5 cut(s) | 221, 442, 721, 1149, 1357 |
| LmnI | GCTCC | 4 cut(s) | 97, 941, 1239, 1694 |
| Lsp1109I | GCAGC | 9 cut(s) | 261, 478, 655, 677, 683, 1211, 1229, 1257, 1423 |
| LweI | GCATC | 8 cut(s) | 691, 746, 886, 898, 1089, 1293, 1322, 1603 |
| MaeI | CTAG | 5 cut(s) | 113, 675, 698, 885, 1553 |
| MaeII | ACGT | 3 cut(s) | 749, 954, 1523 |
| MaeIII | GTNAC | 4 cut(s) | 1034, 1175, 1592, 1664 |
| MalI | GATC | 5 cut(s) | 223, 444, 723, 1151, 1359 |
| MboI | GATC | 5 cut(s) | 221, 442, 721, 1149, 1357 |
| MboII | GAAGA | 6 cut(s) | 362, 564, 1354, 1371, 1586, 1842 |
| MflI | RGATCY | 2 cut(s) | 442, 1149 |
| MhlI | GDGCHC | 2 cut(s) | 806, 946 |
| MlsI | TGGCCA | 1 cut(s) | 1732 |
| MluNI | TGGCCA | 1 cut(s) | 1732 |
| MlyI | GAGTC | 5 cut(s) | 73, 478, 535, 1370, 1526 |
| MmeI | TCCRAC | 2 cut(s) | 414, 529 |
| Mox20I | TGGCCA | 1 cut(s) | 1732 |
| Mph1103I | ATGCAT | 1 cut(s) | 1133 |
| MscI | TGGCCA | 1 cut(s) | 1732 |
| MseI | TTAA | 6 cut(s) | 30, 125, 459, 579, 987, 1919 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1323 |
| Msp20I | TGGCCA | 1 cut(s) | 1732 |
| MspA1I | CMGCKG | 4 cut(s) | 71, 293, 668, 1202 |
| MspCI | CTTAAG | 1 cut(s) | 29 |
| MspI | CCGG | 1 cut(s) | 1866 |
| MspR9I | CCNGG | 1 cut(s) | 447 |
| MvaI | CCWGG | 1 cut(s) | 447 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 665, 671, 1281, 1310, 1923 |
| NdeI | CATATG | 2 cut(s) | 376, 1699 |
| NdeII | GATC | 5 cut(s) | 221, 442, 721, 1149, 1357 |
| NheI | GCTAGC | 1 cut(s) | 1552 |
| NlaIII | CATG | 9 cut(s) | 821, 1022, 1131, 1199, 1310, 1391, 1613, 1768, 1846 |
| NlaIV | GGNNCC | 3 cut(s) | 93, 433, 847 |
| NmuCI | GTSAC | 2 cut(s) | 1034, 1664 |
| NsiI | ATGCAT | 1 cut(s) | 1133 |
| NspI | RCATGY | 1 cut(s) | 1199 |
| PagI | TCATGA | 1 cut(s) | 1387 |
| PaqCI | CACCTGC | 1 cut(s) | 1744 |
| PceI | AGGCCT | 2 cut(s) | 1268, 1475 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 226 |
| PfeI | GAWTC | 5 cut(s) | 367, 881, 1022, 1394, 1486 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1459, 1547 |
| PkrI | GCNGC | 9 cut(s) | 276, 493, 667, 670, 673, 1201, 1244, 1247, 1438 |
| PleI | GAGTC | 5 cut(s) | 72, 478, 534, 1370, 1526 |
| PpsI | GAGTC | 5 cut(s) | 72, 478, 534, 1370, 1526 |
| Ppu21I | YACGTR | 1 cut(s) | 750 |
| PshBI | ATTAAT | 1 cut(s) | 459 |
| PsiI | TTATAA | 1 cut(s) | 1146 |
| Psp6I | CCWGG | 1 cut(s) | 445 |
| PspFI | CCCAGC | 3 cut(s) | 611, 1639, 1779 |
| PspGI | CCWGG | 1 cut(s) | 445 |
| PspN4I | GGNNCC | 3 cut(s) | 93, 433, 847 |
| PspPI | GGNCC | 3 cut(s) | 267, 594, 1527 |
| PstI | CTGCAG | 4 cut(s) | 673, 1247, 1741, 1789 |
| PstNI | CAGNNNCTG | 1 cut(s) | 446 |
| PsuI | RGATCY | 2 cut(s) | 442, 1149 |
| PvuII | CAGCTG | 3 cut(s) | 293, 668, 1202 |
| RsaI | GTAC | 3 cut(s) | 654, 916, 1366 |
| RsaNI | GTAC | 3 cut(s) | 653, 915, 1365 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1323 |
| SaqAI | TTAA | 6 cut(s) | 30, 125, 459, 579, 987, 1919 |
| SatI | GCNGC | 9 cut(s) | 275, 492, 666, 669, 672, 1200, 1243, 1246, 1437 |
| Sau3AI | GATC | 5 cut(s) | 221, 442, 721, 1149, 1357 |
| Sau96I | GGNCC | 3 cut(s) | 267, 594, 1527 |
| SbfI | CCTGCAGG | 1 cut(s) | 1789 |
| SchI | GAGTC | 5 cut(s) | 73, 478, 535, 1370, 1526 |
| ScrFI | CCNGG | 1 cut(s) | 447 |
| SdaI | CCTGCAGG | 1 cut(s) | 1789 |
| SduI | GDGCHC | 2 cut(s) | 806, 946 |
| SfaNI | GCATC | 8 cut(s) | 691, 746, 886, 898, 1089, 1293, 1322, 1603 |
| SfcI | CTRYAG | 8 cut(s) | 669, 824, 1243, 1270, 1293, 1689, 1737, 1785 |
| SinI | GGWCC | 2 cut(s) | 267, 594 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1323 |
| SmlI | CTYRAG | 4 cut(s) | 29, 1094, 1421, 1888 |
| SmoI | CTYRAG | 4 cut(s) | 29, 1094, 1421, 1888 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1789 |
| SseBI | AGGCCT | 2 cut(s) | 1268, 1475 |
| SsiI | CCGC | 3 cut(s) | 69, 974, 1646 |
| SspMI | CTAG | 5 cut(s) | 113, 675, 698, 885, 1553 |
| StuI | AGGCCT | 2 cut(s) | 1268, 1475 |
| StyD4I | CCNGG | 1 cut(s) | 445 |
| StyI | CCWWGG | 2 cut(s) | 95, 840 |
| TaaI | ACNGT | 3 cut(s) | 652, 1034, 1758 |
| TaiI | ACGT | 3 cut(s) | 752, 957, 1526 |
| TaqI | TCGA | 5 cut(s) | 810, 904, 1117, 1482, 1659 |
| TaqII | GACCGA | 1 cut(s) | 582 |
| TatI | WGTACW | 2 cut(s) | 652, 1364 |
| TfiI | GAWTC | 5 cut(s) | 367, 881, 1022, 1394, 1486 |
| Tru1I | TTAA | 6 cut(s) | 30, 125, 459, 579, 987, 1919 |
| Tru9I | TTAA | 6 cut(s) | 30, 125, 459, 579, 987, 1919 |
| TscAI | CASTG | 4 cut(s) | 655, 1039, 1713, 1819 |
| TseFI | GTSAC | 2 cut(s) | 1034, 1664 |
| TseI | GCWGC | 9 cut(s) | 274, 491, 665, 668, 671, 1199, 1242, 1245, 1436 |
| Tsp45I | GTSAC | 2 cut(s) | 1034, 1664 |
| TspRI | CASTG | 4 cut(s) | 655, 1039, 1713, 1819 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1459, 1547 |
| Vha464I | CTTAAG | 1 cut(s) | 29 |
| VpaK11BI | GGWCC | 2 cut(s) | 267, 594 |
| VspI | ATTAAT | 1 cut(s) | 459 |
| XapI | RAATTY | 3 cut(s) | 763, 1720, 1846 |
| XceI | RCATGY | 1 cut(s) | 1199 |
| XmiI | GTMKAC | 1 cut(s) | 752 |
| XspI | CTAG | 5 cut(s) | 113, 675, 698, 885, 1553 |
| Zsp2I | ATGCAT | 1 cut(s) | 1133 |