Rw7G015090

Methyl-CpG binding domain

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
15019109 .. 15022017
2909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G015090.1

Sequence Viewer

Length: 2022 bp
ATGAATGGCCTACGAATTGAGGTAACTGAAACATCCAAATTGCAAGACAGGAGTCCTGCTGAAAGCATGGGAGATTTGGCTCCAAGAACTGAGGTTGTCCTAGAGAAGCATTTAACTGAGAATCTGATTGAAGAATCTATCGCAACTAAGGGACATTTTTCCCCAAGAGACCCAAAAGCTGAACTGTCTGGCAAACTAGTAGGCAAAAGATTATCACAGCAAAAAGCTGGACTCTCTGACAAATGTGAAACTAAAAGGTCCAAGAGTGAAGACAGGTGGATAACAGCTGAAAGCAAAGTTGCTGAGGCTGTCCCACAGAAGCATTTGACTGAGAGTGTGGTTAAGAAGTGTGCCAAAACCAAGGAAGATTGTTCTCCAAGCAAGTTACTGCCAAATGGAGTCTCTGATAAGCTTGAAGGAAAAATCACAATAGTTGAAGTTGATGGTTCCTTGAGAGATCCTGGCAAAGTGATTTTTTCTGAAAACGACCCTGCTTTGACTCCTGCTTCAAACACCTTGAATAACAGGAACTCACTCATGAGTCAGATGGAAAACAGGAACATCAGAAGGTCCCAGGTAGACAATAGAAAATTGAAAAAGGACAAGTTTAATTTGCCTCGTCGGTCCTCAAAACGACTTGCTGGGCAACAACCAGAGCCAGTAAATAACCTGGTTTCAACTGTACAGGCTCGTCAAGTTGCAGCTATAAAGTCTAGTAAAGGGGATGGCAGACAAGATGCAGGTTTGGCTTCAGATGATCTTGAAAATAGAGCACCTCAGCAGCTTGGGGATGCATTAGAAGTAGAGGTTGCAGACCATACTCTAACTGAAGTAAATTCTACACTACAAGGAGAGCCATTGAGCAAGTTCAAGAGGCTACTTGAAGGTCTTGAACTACAGCTGTCTGTTGATTCCTTGGGTTCCAACGAACAAACTCTTCAAGTTGCAACCAGAGAGTCTAGTAGAGGTGATGCCAGTCGAGATGCGGGTATGGCTTCAAATAAATTTGTCAATGGAGCATCTCTGCAGCTTGGGGCTTCATCAGAACCCGAGTCTTTCTTTGATACCTTAGATGACATAGACTCTATATCATATGAAGAGTCATTGAACAAGGGCAAAATGTTGCTTGATGACCAAGTGGTTCCTAAAGAGCAACATCATAAGTTGGATACTGAGGAAATGGATCCTGAGAAACTCAGCTTTCTGCTTCGAGAAGACTCATGCTTTCAGTTTGCTGTCAAAGTCCTCACAGGGGAATTGCCAATAGATTACGAACCTATTTTGAAACCTGCAGCTCATATGGTGCCAAAGGCAACTGGGAGCTGCAGCAGAAATGCAACTGCCAAGTCCTGTAGCAGTAAAGCCATCCAAGCTGTAGATTCGGCACATGAAGCATCTCAGCAGTTTGAGGCTATCCAAGAGAAGAAGGTAGCAGATGATCCTTGTACTATAACAAACTCTTCACTTCATGAGGAATCTTCGAACGAGATTGAGAAATCTCATGAGAACCAAGCTGCTGATGTGGAGCAACTCCAGATGTCTGAAACTGAGAAGGCTGCTGTCGAGAATCCACAGTTGGACTTCTCATCCCTTTTCCCGGATACTTGGTCCGATTCTGACCCATTCTTTGATCTTGCATATCAGAGTCTTAGAGAGGATGATCTGTTTCAGGCTTACTTTCAGGAAAATTACAACCAGATAGATGGCTCGGCACTGCCAGAGTTTGGCTCACCTAGCATTTTCCAGAATGACATGTTTGATCCACCAGAAGAATATGTCCCAGGACACCTGCTGCCCATGAATTCTTCTTTGCCACCTGCGGAAAATGTGAGCCAGCCATTATCCATGAATTCTTCATCCCAGCCTGCAGGAATTGAGGGCTTTTCAAATGGCAATGGGGTTGGTTCAGACCAACAGTTATCCATGAATTCTTCATTCTTGCCAGCAGGAAATGTGGTCTCATCCAACTCAAGTGGGGTTGGTACACAGAAGCCTTGCTTTGGAGGCAAACAGGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

673

Amino Acids

73.54

Weight (kDa)

4.83

Isoelectric Point (pI)

55.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1797, 1825
Acc36I ACCTGC 4 cut(s) 731, 1297, 1797, 1825
AccB1I GGYRCC 1 cut(s) 1303
AccB7I CCANNNNNTGG 1 cut(s) 1724
AccI GTMKAC 1 cut(s) 579
AciI CCGC 2 cut(s) 986, 1820
AclWI GGATC 5 cut(s) 452, 1178, 1191, 1433, 1754
AcsI RAATTY 5 cut(s) 835, 1004, 1801, 1849, 1927
AcuI CTGAAG 2 cut(s) 735, 849
AfaI GTAC 3 cut(s) 684, 1447, 1984
AfiI CCNNNNNNNGG 4 cut(s) 1252, 1597, 1724, 2000
AflIII ACRYGT 1 cut(s) 1752
AhlI ACTAGT 1 cut(s) 196
AjnI CCWGG 4 cut(s) 460, 573, 669, 1780
AjuI GAANNNNNNNTTGG 2 cut(s) 1559, 1591
Alw21I GWGCWC 1 cut(s) 775
Alw26I GTCTC 3 cut(s) 162, 406, 1963
AlwI GGATC 5 cut(s) 452, 1178, 1191, 1433, 1754
Ama87I CYCGRG 1 cut(s) 1049
AoxI GGCC 1 cut(s) 7
ApeKI GCWGC 9 cut(s) 701, 781, 1027, 1292, 1323, 1326, 1514, 1556, 1792
ApoI RAATTY 5 cut(s) 835, 1004, 1801, 1849, 1927
ArsI GACNNNNNNTTYG 2 cut(s) 1610, 1642
AspS9I GGNCC 4 cut(s) 258, 570, 624, 1608
AsuC2I CCSGG 1 cut(s) 1598
AsuHPI GGTGA 2 cut(s) 980, 1722
AsuII TTCGAA 1 cut(s) 1481
AvaI CYCGRG 1 cut(s) 1049
AvaII GGWCC 4 cut(s) 258, 570, 624, 1608
BamHI GGATCC 1 cut(s) 1183
BanI GGYRCC 1 cut(s) 1303
BbsI GAAGAC 2 cut(s) 276, 1221
Bbv12I GWGCWC 1 cut(s) 775
BbvCI CCTCAGC 2 cut(s) 303, 777
BbvI GCAGC 9 cut(s) 713, 793, 1039, 1304, 1310, 1338, 1501, 1543, 1779
BccI CCATC 5 cut(s) 437, 541, 719, 1373, 1697
BciT130I CCWGG 4 cut(s) 462, 575, 671, 1782
BciVI GTATCC 2 cut(s) 1162, 1594
BcnI CCSGG 1 cut(s) 1598
BcoDI GTCTC 3 cut(s) 162, 406, 1963
BcuI ACTAGT 1 cut(s) 196
BfaI CTAG 5 cut(s) 101, 197, 714, 960, 1734
BfmI CTRYAG 7 cut(s) 896, 1025, 1290, 1324, 1351, 1374, 1866
BfuAI ACCTGC 4 cut(s) 731, 1297, 1797, 1825
BfuI GTATCC 2 cut(s) 1162, 1594
BisI GCNGC 9 cut(s) 702, 782, 1028, 1293, 1324, 1327, 1515, 1557, 1793
BlsI GCNGC 9 cut(s) 703, 783, 1029, 1294, 1325, 1328, 1516, 1558, 1794
Bme1390I CCNGG 5 cut(s) 462, 575, 671, 1598, 1782
Bme18I GGWCC 4 cut(s) 258, 570, 624, 1608
BmeT110I CYCGRG 1 cut(s) 1049
BmgT120I GGNCC 4 cut(s) 258, 570, 624, 1608
BmiI GGNNCC 7 cut(s) 81, 448, 572, 922, 1143, 1185, 1305
BmrFI CCNGG 5 cut(s) 462, 575, 671, 1598, 1782
BmrI ACTGGG 1 cut(s) 1326
BmsI GCATC 6 cut(s) 727, 781, 961, 973, 1028, 1403
BmuI ACTGGG 1 cut(s) 1326
BoxI GACNNNNGTC 1 cut(s) 51
BpiI GAAGAC 2 cut(s) 276, 1221
BplI GAGNNNNNCTC 2 cut(s) 1712, 1744
BpmI CTGGAG 1 cut(s) 1517
Bpu10I CCTNAGC 2 cut(s) 303, 777
Bpu14I TTCGAA 1 cut(s) 1481
BpuEI CTTGAG 2 cut(s) 472, 1954
BpuMI CCSGG 1 cut(s) 1598
BsaI GGTCTC 2 cut(s) 162, 1963
BsaJI CCNNGG 4 cut(s) 360, 573, 915, 1780
Bsc4I CCNNNNNNNGG 4 cut(s) 1252, 1597, 1724, 2000
Bse1I ACTGG 3 cut(s) 659, 975, 1321
Bse3DI GCAATG 1 cut(s) 1900
BseBI CCWGG 4 cut(s) 462, 575, 671, 1782
BseDI CCNNGG 4 cut(s) 360, 573, 915, 1780
BseGI GGATG 8 cut(s) 32, 730, 796, 1365, 1586, 1663, 1856, 1961
BseLI CCNNNNNNNGG 4 cut(s) 1252, 1597, 1724, 2000
BseMI GCAATG 1 cut(s) 1900
BseNI ACTGG 3 cut(s) 659, 975, 1321
BseXI GCAGC 9 cut(s) 713, 793, 1039, 1304, 1310, 1338, 1501, 1543, 1779
BseYI CCCAGC 2 cut(s) 641, 1860
BshFI GGCC 1 cut(s) 9
BshNI GGYRCC 1 cut(s) 1303
BsiHKAI GWGCWC 1 cut(s) 775
BsiHKCI CYCGRG 1 cut(s) 1049
BsiSI CCGG 1 cut(s) 1598
BslFI GGGAC 4 cut(s) 165, 296, 556, 1763
BslI CCNNNNNNNGG 4 cut(s) 1252, 1597, 1724, 2000
BsmAI GTCTC 3 cut(s) 162, 406, 1963
BsmFI GGGAC 4 cut(s) 165, 296, 556, 1763
BsnI GGCC 1 cut(s) 9
Bso31I GGTCTC 2 cut(s) 162, 1963
BsoBI CYCGRG 1 cut(s) 1049
Bsp119I TTCGAA 1 cut(s) 1481
Bsp1286I GDGCHC 1 cut(s) 775
Bsp1407I TGTACA 1 cut(s) 682
Bsp143I GATC 7 cut(s) 457, 757, 1183, 1438, 1630, 1660, 1759
BspACI CCGC 2 cut(s) 986, 1820
BspANI GGCC 1 cut(s) 9
BspHI TCATGA 3 cut(s) 537, 1468, 1501
BspLI GGNNCC 7 cut(s) 81, 448, 572, 922, 1143, 1185, 1305
BspMAI CTGCAG 4 cut(s) 1029, 1294, 1328, 1870
BspMI ACCTGC 4 cut(s) 731, 1297, 1797, 1825
BspPI GGATC 5 cut(s) 452, 1178, 1191, 1433, 1754
BspT104I TTCGAA 1 cut(s) 1481
BspT107I GGYRCC 1 cut(s) 1303
BspTNI GGTCTC 2 cut(s) 162, 1963
BsrDI GCAATG 1 cut(s) 1900
BsrGI TGTACA 1 cut(s) 682
BsrI ACTGG 3 cut(s) 659, 975, 1321
BssECI CCNNGG 4 cut(s) 360, 573, 915, 1780
BssMI GATC 7 cut(s) 457, 757, 1183, 1438, 1630, 1660, 1759
BssT1I CCWWGG 2 cut(s) 360, 915
Bst2UI CCWGG 4 cut(s) 462, 575, 671, 1782
Bst4CI ACNGT 4 cut(s) 186, 682, 1575, 1917
Bst6I CTCTTC 3 cut(s) 942, 1092, 1465
BstAUI TGTACA 1 cut(s) 682
BstBI TTCGAA 1 cut(s) 1481
BstC8I GCNNGC 3 cut(s) 1835, 1866, 1944
BstF5I GGATG 8 cut(s) 32, 730, 796, 1365, 1586, 1663, 1856, 1961
BstKTI GATC 7 cut(s) 460, 760, 1186, 1441, 1633, 1663, 1762
BstMAI GTCTC 3 cut(s) 162, 406, 1963
BstMBI GATC 7 cut(s) 457, 757, 1183, 1438, 1630, 1660, 1759
BstMWI GCNNNNNNNGC 6 cut(s) 746, 992, 1370, 1391, 1734, 2004
BstNI CCWGG 4 cut(s) 462, 575, 671, 1782
BstNSI RCATGY 1 cut(s) 1756
BstPAI GACNNNNGTC 1 cut(s) 51
BstSCI CCNGG 5 cut(s) 460, 573, 669, 1596, 1780
BstSFI CTRYAG 7 cut(s) 896, 1025, 1290, 1324, 1351, 1374, 1866
BstV1I GCAGC 9 cut(s) 713, 793, 1039, 1304, 1310, 1338, 1501, 1543, 1779
BstV2I GAAGAC 2 cut(s) 276, 1221
BstX2I RGATCY 2 cut(s) 457, 1183
BstXI CCANNNNNNTGG 1 cut(s) 1703
BstYI RGATCY 2 cut(s) 457, 1183
BsuI GTATCC 2 cut(s) 1162, 1594
BsuRI GGCC 1 cut(s) 9
BtsCI GGATG 8 cut(s) 32, 730, 796, 1365, 1586, 1663, 1856, 1961
BtsI GCAGTG 1 cut(s) 1712
BtsIMutI CAGTG 1 cut(s) 1712
BveI ACCTGC 4 cut(s) 731, 1297, 1797, 1825
Cac8I GCNNGC 3 cut(s) 1835, 1866, 1944
CciI TCATGA 3 cut(s) 537, 1468, 1501
Cfr13I GGNCC 4 cut(s) 258, 570, 624, 1608
CsiI ACCWGGT 1 cut(s) 669
Csp6I GTAC 3 cut(s) 683, 1446, 1983
CspCI CAANNNNNGTGG 2 cut(s) 1954, 1989
CviQI GTAC 3 cut(s) 683, 1446, 1983
DpnI GATC 7 cut(s) 459, 759, 1185, 1440, 1632, 1662, 1761
DpnII GATC 7 cut(s) 457, 757, 1183, 1438, 1630, 1660, 1759
Eam1104I CTCTTC 3 cut(s) 942, 1092, 1465
EarI CTCTTC 3 cut(s) 942, 1092, 1465
Eco130I CCWWGG 2 cut(s) 360, 915
Eco31I GGTCTC 2 cut(s) 162, 1963
Eco47I GGWCC 4 cut(s) 258, 570, 624, 1608
Eco57I CTGAAG 2 cut(s) 735, 849
Eco88I CYCGRG 1 cut(s) 1049
EcoO109I RGGNCCY 1 cut(s) 570
EcoRI GAATTC 3 cut(s) 1801, 1849, 1927
EcoRII CCWGG 4 cut(s) 460, 573, 669, 1780
EcoT14I CCWWGG 2 cut(s) 360, 915
EcoT22I ATGCAT 1 cut(s) 796
ErhI CCWWGG 2 cut(s) 360, 915
FalI AAGNNNNNCTT 2 cut(s) 1982, 2014
FaqI GGGAC 4 cut(s) 165, 296, 556, 1763
FauI CCCGC 1 cut(s) 979
FauNDI CATATG 2 cut(s) 1093, 1299
FblI GTMKAC 1 cut(s) 579
Fnu4HI GCNGC 9 cut(s) 702, 782, 1028, 1293, 1324, 1327, 1515, 1557, 1793
FokI GGATG 8 cut(s) 19, 737, 803, 1352, 1573, 1670, 1843, 1948
Fsp4HI GCNGC 9 cut(s) 702, 782, 1028, 1293, 1324, 1327, 1515, 1557, 1793
FspBI CTAG 5 cut(s) 101, 197, 714, 960, 1734
GluI GCNGC 9 cut(s) 702, 782, 1028, 1293, 1324, 1327, 1515, 1557, 1793
GsaI CCCAGC 2 cut(s) 645, 1864
GsuI CTGGAG 1 cut(s) 1517
HaeIII GGCC 1 cut(s) 9
HapII CCGG 1 cut(s) 1598
HindIII AAGCTT 1 cut(s) 410
HpaII CCGG 1 cut(s) 1598
HphI GGTGA 2 cut(s) 980, 1722
Hpy166II GTNNAC 2 cut(s) 580, 1985
Hpy8I GTNNAC 2 cut(s) 580, 1985
Hpy99I CGWCG 1 cut(s) 624
HpyAV CCTTC 5 cut(s) 410, 561, 878, 1420, 1546
HpyCH4III ACNGT 4 cut(s) 186, 682, 1575, 1917
HpyF10VI GCNNNNNNNGC 6 cut(s) 746, 992, 1370, 1391, 1734, 2004
Kzo9I GATC 7 cut(s) 457, 757, 1183, 1438, 1630, 1660, 1759
LmnI GCTCC 4 cut(s) 85, 1016, 1320, 1525
Lsp1109I GCAGC 9 cut(s) 713, 793, 1039, 1304, 1310, 1338, 1501, 1543, 1779
LweI GCATC 6 cut(s) 727, 781, 961, 973, 1028, 1403
MabI ACCWGGT 1 cut(s) 669
MaeI CTAG 5 cut(s) 101, 197, 714, 960, 1734
MaeIII GTNAC 2 cut(s) 22, 384
MalI GATC 7 cut(s) 459, 759, 1185, 1440, 1632, 1662, 1761
MboI GATC 7 cut(s) 457, 757, 1183, 1438, 1630, 1660, 1759
MflI RGATCY 2 cut(s) 457, 1183
MhlI GDGCHC 1 cut(s) 775
MmeI TCCRAC 4 cut(s) 948, 1146, 1557, 1989
Mph1103I ATGCAT 1 cut(s) 796
MseI TTAA 3 cut(s) 113, 342, 609
MspA1I CMGCKG 2 cut(s) 287, 901
MspI CCGG 1 cut(s) 1598
MspR9I CCNGG 5 cut(s) 462, 575, 671, 1598, 1782
MvaI CCWGG 4 cut(s) 462, 575, 671, 1782
MwoI GCNNNNNNNGC 6 cut(s) 746, 992, 1370, 1391, 1734, 2004
NciI CCSGG 1 cut(s) 1598
NdeI CATATG 2 cut(s) 1093, 1299
NdeII GATC 7 cut(s) 457, 757, 1183, 1438, 1630, 1660, 1759
NlaIV GGNNCC 7 cut(s) 81, 448, 572, 922, 1143, 1185, 1305
NmeAIII GCCGAG 1 cut(s) 1688
NsiI ATGCAT 1 cut(s) 796
NspI RCATGY 1 cut(s) 1756
NspV TTCGAA 1 cut(s) 1481
PagI TCATGA 3 cut(s) 537, 1468, 1501
PaqCI CACCTGC 2 cut(s) 1797, 1825
PciI ACATGT 1 cut(s) 1752
PfeI GAWTC 7 cut(s) 121, 134, 911, 1379, 1475, 1567, 1613
PflMI CCANNNNNTGG 1 cut(s) 1724
PfoI TCCNGGA 1 cut(s) 1596
PkrI GCNGC 9 cut(s) 703, 783, 1029, 1294, 1325, 1328, 1516, 1558, 1794
PpuMI RGGWCCY 1 cut(s) 570
PscI ACATGT 1 cut(s) 1752
PshAI GACNNNNGTC 1 cut(s) 51
Psp5II RGGWCCY 1 cut(s) 570
Psp6I CCWGG 4 cut(s) 460, 573, 669, 1780
PspFI CCCAGC 2 cut(s) 641, 1860
PspGI CCWGG 4 cut(s) 460, 573, 669, 1780
PspN4I GGNNCC 7 cut(s) 81, 448, 572, 922, 1143, 1185, 1305
PspPI GGNCC 4 cut(s) 258, 570, 624, 1608
PspPPI RGGWCCY 1 cut(s) 570
PstI CTGCAG 4 cut(s) 1029, 1294, 1328, 1870
PsuI RGATCY 2 cut(s) 457, 1183
PvuII CAGCTG 2 cut(s) 287, 901
RsaI GTAC 3 cut(s) 684, 1447, 1984
RsaNI GTAC 3 cut(s) 683, 1446, 1983
SaqAI TTAA 3 cut(s) 113, 342, 609
SatI GCNGC 9 cut(s) 702, 782, 1028, 1293, 1324, 1327, 1515, 1557, 1793
Sau3AI GATC 7 cut(s) 457, 757, 1183, 1438, 1630, 1660, 1759
Sau96I GGNCC 4 cut(s) 258, 570, 624, 1608
SbfI CCTGCAGG 1 cut(s) 1870
ScrFI CCNGG 5 cut(s) 462, 575, 671, 1598, 1782
SdaI CCTGCAGG 1 cut(s) 1870
SduI GDGCHC 1 cut(s) 775
SexAI ACCWGGT 1 cut(s) 669
SfaNI GCATC 6 cut(s) 727, 781, 961, 973, 1028, 1403
SfcI CTRYAG 7 cut(s) 896, 1025, 1290, 1324, 1351, 1374, 1866
SfuI TTCGAA 1 cut(s) 1481
SinI GGWCC 4 cut(s) 258, 570, 624, 1608
SmlI CTYRAG 2 cut(s) 451, 1969
SmoI CTYRAG 2 cut(s) 451, 1969
SpeI ACTAGT 1 cut(s) 196
Sse8387I CCTGCAGG 1 cut(s) 1870
SsiI CCGC 2 cut(s) 986, 1820
SspMI CTAG 5 cut(s) 101, 197, 714, 960, 1734
StyD4I CCNGG 5 cut(s) 460, 573, 669, 1596, 1780
StyI CCWWGG 2 cut(s) 360, 915
TaaI ACNGT 4 cut(s) 186, 682, 1575, 1917
TaqI TCGA 4 cut(s) 979, 1210, 1481, 1563
TaqII GACCGA 1 cut(s) 612
TatI WGTACW 2 cut(s) 682, 1445
TfiI GAWTC 7 cut(s) 121, 134, 911, 1379, 1475, 1567, 1613
Tru1I TTAA 3 cut(s) 113, 342, 609
Tru9I TTAA 3 cut(s) 113, 342, 609
TscAI CASTG 1 cut(s) 1719
TseI GCWGC 9 cut(s) 701, 781, 1027, 1292, 1323, 1326, 1514, 1556, 1792
TspRI CASTG 1 cut(s) 1719
Van91I CCANNNNNTGG 1 cut(s) 1724
VpaK11BI GGWCC 4 cut(s) 258, 570, 624, 1608
XapI RAATTY 5 cut(s) 835, 1004, 1801, 1849, 1927
XceI RCATGY 1 cut(s) 1756
XmiI GTMKAC 1 cut(s) 579
XspI CTAG 5 cut(s) 101, 197, 714, 960, 1734
Zsp2I ATGCAT 1 cut(s) 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.