Methyl-CpG binding domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G63240 |
| fragaria_vesca | FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01911 FvH4_5g01911 |
| malus_domestica | MD06G1076800.v1.1 MD14G1098200.v1.1 |
| prunus_persica | Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 |
| pyrus_communis | pycom06g07430 pycom06g07440 pycom14g09640 |
| rosa_chinensis | RchiOBHm_Chr7g0198611 RchiOBHm_Chr7g0198661 |
| rosa_laevigata | RLG00000003850 RLG00000003857 |
| rosa_multiflora | Rmu_co8077932.1_g000001 Rmu_co8274787.1_g000001 Rmu_co8506873.1_g000001 Rmu_sc0000220.1_g000017 Rmu_sc0004229.1_g000004 |
| rosa_roxburghii | Rroxscaffold_3G00257550 Rroxscaffold_3G00257620 |
| rosa_rugosa | Rorug07G0048500 Rorug07G0049000 Rorug07G0049100 Rorug07G0049100 |
| rosa_samantha | Rh4BG123200 Rh7AG172000 Rh7AG172600 Rh7BG175400 Rh7BG176100 Rh7CG181500 Rh7CG182000 Rh7DG174500 Rh7DG174900 Rh7DG175200 |
| rosa_wichuraiana | Rw7G015090 Rw7G015150 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2468 |
| AarI | CACCTGC | 1 cut(s) | 2869 |
| Acc36I | ACCTGC | 3 cut(s) | 2167, 2869, 3025 |
| AccB1I | GGYRCC | 1 cut(s) | 701 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 611, 1733, 2759, 2914 |
| AccBSI | CCGCTC | 1 cut(s) | 627 |
| AciI | CCGC | 6 cut(s) | 33, 439, 530, 625, 1049, 1832 |
| AclWI | GGATC | 7 cut(s) | 329, 581, 596, 1301, 1410, 2077, 2621 |
| AcoI | YGGCCR | 3 cut(s) | 2313, 2905, 2916 |
| AcsI | RAATTY | 7 cut(s) | 187, 2087, 2667, 2845, 2923, 2947, 3001 |
| AcuI | CTGAAG | 2 cut(s) | 819, 1350 |
| AflII | CTTAAG | 1 cut(s) | 2258 |
| AjiI | CACGTC | 1 cut(s) | 1469 |
| AjnI | CCWGG | 7 cut(s) | 532, 782, 1309, 1518, 2041, 2610, 3033 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2212, 2244 |
| AleI | CACNNNNGTG | 1 cut(s) | 476 |
| Alw21I | GWGCWC | 3 cut(s) | 17, 698, 2055 |
| Alw26I | GTCTC | 3 cut(s) | 659, 966, 2827 |
| AlwI | GGATC | 7 cut(s) | 329, 581, 596, 1301, 1410, 2077, 2621 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 908, 1310 |
| Ama87I | CYCGRG | 1 cut(s) | 2824 |
| AoxI | GGCC | 9 cut(s) | 826, 872, 2313, 2376, 2827, 2905, 2916, 2983, 3030 |
| ApoI | RAATTY | 7 cut(s) | 187, 2087, 2667, 2845, 2923, 2947, 3001 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 113, 929, 2529 |
| AspLEI | GCGC | 2 cut(s) | 61, 402 |
| AspS9I | GGNCC | 7 cut(s) | 873, 1086, 1473, 2045, 2377, 2827, 3031 |
| AsuHPI | GGTGA | 8 cut(s) | 179, 772, 1583, 1826, 2675, 2710, 2757, 2784 |
| AsuII | TTCGAA | 2 cut(s) | 2231, 2344 |
| AvaI | CYCGRG | 1 cut(s) | 2824 |
| AvaII | GGWCC | 3 cut(s) | 1086, 1473, 2045 |
| AxyI | CCTNAGG | 1 cut(s) | 2535 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1749, 1782 |
| BalI | TGGCCA | 2 cut(s) | 2315, 2918 |
| BanI | GGYRCC | 1 cut(s) | 701 |
| BanII | GRGCYC | 2 cut(s) | 17, 2055 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1524, 1556 |
| BauI | CACGAG | 1 cut(s) | 10 |
| BbsI | GAAGAC | 3 cut(s) | 470, 613, 2333 |
| Bbv12I | GWGCWC | 3 cut(s) | 17, 698, 2055 |
| BbvCI | CCTCAGC | 2 cut(s) | 177, 1146 |
| BccI | CCATC | 7 cut(s) | 257, 981, 1021, 1286, 1387, 1568, 1727 |
| BceAI | ACGGC | 3 cut(s) | 461, 2300, 2370 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1419, 1453 |
| BciT130I | CCWGG | 7 cut(s) | 534, 784, 1311, 1520, 2043, 2612, 3035 |
| BciVI | GTATCC | 1 cut(s) | 2608 |
| BcoDI | GTCTC | 3 cut(s) | 659, 966, 2827 |
| BfaI | CTAG | 7 cut(s) | 830, 920, 1017, 1554, 1563, 1797, 1806 |
| BfmI | CTRYAG | 7 cut(s) | 1689, 1752, 1871, 2160, 2365, 2388, 2940 |
| BfrI | CTTAAG | 1 cut(s) | 2258 |
| BfuAI | ACCTGC | 3 cut(s) | 2167, 2869, 3025 |
| BfuI | GTATCC | 1 cut(s) | 2608 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1595 |
| Bme1390I | CCNGG | 7 cut(s) | 534, 784, 1311, 1520, 2043, 2612, 3035 |
| Bme18I | GGWCC | 3 cut(s) | 1086, 1473, 2045 |
| BmeT110I | CYCGRG | 1 cut(s) | 2824 |
| BmgBI | CACGTC | 1 cut(s) | 1469 |
| BmgT120I | GGNCC | 7 cut(s) | 873, 1086, 1473, 2045, 2377, 2827, 3031 |
| BmiI | GGNNCC | 7 cut(s) | 29, 703, 900, 1137, 1297, 1989, 2016 |
| BmrFI | CCNGG | 7 cut(s) | 534, 784, 1311, 1520, 2043, 2612, 3035 |
| BmrI | ACTGGG | 2 cut(s) | 114, 2208 |
| BmuI | ACTGGG | 2 cut(s) | 114, 2208 |
| BpiI | GAAGAC | 3 cut(s) | 470, 613, 2333 |
| BpmI | CTGGAG | 3 cut(s) | 61, 681, 885 |
| Bpu10I | CCTNAGC | 4 cut(s) | 177, 1146, 2304, 3073 |
| Bpu14I | TTCGAA | 2 cut(s) | 2231, 2344 |
| BpuEI | CTTGAG | 1 cut(s) | 2501 |
| BsaBI | GATNNNNATC | 2 cut(s) | 243, 991 |
| BsaI | GGTCTC | 1 cut(s) | 659 |
| BsaJI | CCNNGG | 7 cut(s) | 123, 163, 533, 1203, 1761, 2219, 3033 |
| BsaWI | WCCGGW | 1 cut(s) | 1894 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 308, 338, 1692, 1722 |
| Bse118I | RCCGGY | 2 cut(s) | 35, 1589 |
| Bse21I | CCTNAGG | 1 cut(s) | 2535 |
| Bse3DI | GCAATG | 1 cut(s) | 2896 |
| Bse8I | GATNNNNATC | 2 cut(s) | 243, 991 |
| BseBI | CCWGG | 7 cut(s) | 534, 784, 1311, 1520, 2043, 2612, 3035 |
| BseDI | CCNNGG | 7 cut(s) | 123, 163, 533, 1203, 1761, 2219, 3033 |
| BseGI | GGATG | 5 cut(s) | 1645, 1852, 1888, 2035, 2686 |
| BseJI | GATNNNNATC | 2 cut(s) | 243, 991 |
| BseMI | GCAATG | 1 cut(s) | 2896 |
| BseRI | GAGGAG | 2 cut(s) | 1288, 2552 |
| BseYI | CCCAGC | 3 cut(s) | 1490, 2291, 2426 |
| BsgI | GTGCAG | 3 cut(s) | 500, 1887, 2382 |
| BshFI | GGCC | 9 cut(s) | 828, 874, 2315, 2378, 2829, 2907, 2918, 2985, 3032 |
| BshNI | GGYRCC | 1 cut(s) | 701 |
| BsiHKAI | GWGCWC | 3 cut(s) | 17, 698, 2055 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2824 |
| BsiSI | CCGG | 4 cut(s) | 36, 1590, 1895, 2865 |
| BslFI | GGGAC | 1 cut(s) | 1139 |
| BsmAI | GTCTC | 3 cut(s) | 659, 966, 2827 |
| BsmFI | GGGAC | 1 cut(s) | 1139 |
| BsmI | GAATGC | 1 cut(s) | 300 |
| BsnI | GGCC | 9 cut(s) | 828, 874, 2315, 2378, 2829, 2907, 2918, 2985, 3032 |
| Bso31I | GGTCTC | 1 cut(s) | 659 |
| BsoBI | CYCGRG | 1 cut(s) | 2824 |
| Bsp119I | TTCGAA | 2 cut(s) | 2231, 2344 |
| Bsp1286I | GDGCHC | 3 cut(s) | 17, 698, 2055 |
| Bsp1407I | TGTACA | 3 cut(s) | 350, 1531, 1931 |
| BspACI | CCGC | 6 cut(s) | 33, 439, 530, 625, 1049, 1832 |
| BspANI | GGCC | 9 cut(s) | 828, 874, 2315, 2378, 2829, 2907, 2918, 2985, 3032 |
| BspHI | TCATGA | 2 cut(s) | 2449, 2482 |
| BspLI | GGNNCC | 7 cut(s) | 29, 703, 900, 1137, 1297, 1989, 2016 |
| BspMAI | CTGCAG | 3 cut(s) | 1875, 2164, 2944 |
| BspMI | ACCTGC | 3 cut(s) | 2167, 2869, 3025 |
| BspPI | GGATC | 7 cut(s) | 329, 581, 596, 1301, 1410, 2077, 2621 |
| BspQI | GCTCTTC | 2 cut(s) | 165, 1545 |
| BspT104I | TTCGAA | 2 cut(s) | 2231, 2344 |
| BspT107I | GGYRCC | 1 cut(s) | 701 |
| BspTI | CTTAAG | 1 cut(s) | 2258 |
| BspTNI | GGTCTC | 1 cut(s) | 659 |
| BsrBI | CCGCTC | 1 cut(s) | 627 |
| BsrDI | GCAATG | 1 cut(s) | 2896 |
| BsrFI | RCCGGY | 2 cut(s) | 35, 1589 |
| BsrGI | TGTACA | 3 cut(s) | 350, 1531, 1931 |
| BssAI | RCCGGY | 2 cut(s) | 35, 1589 |
| BssECI | CCNNGG | 7 cut(s) | 123, 163, 533, 1203, 1761, 2219, 3033 |
| BssSI | CACGAG | 1 cut(s) | 10 |
| BssT1I | CCWWGG | 4 cut(s) | 123, 1203, 1761, 2219 |
| Bst2BI | CACGAG | 1 cut(s) | 10 |
| Bst2UI | CCWGG | 7 cut(s) | 534, 784, 1311, 1520, 2043, 2612, 3035 |
| Bst6I | CTCTTC | 5 cut(s) | 165, 577, 1545, 1788, 2535 |
| BstAFI | CTTAAG | 1 cut(s) | 2258 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 408 |
| BstAUI | TGTACA | 3 cut(s) | 350, 1531, 1931 |
| BstBI | TTCGAA | 2 cut(s) | 2231, 2344 |
| BstC8I | GCNNGC | 5 cut(s) | 37, 1053, 2289, 2313, 2940 |
| BstDSI | CCRYGG | 1 cut(s) | 163 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3072 |
| BstF5I | GGATG | 5 cut(s) | 1645, 1852, 1888, 2035, 2686 |
| BstHHI | GCGC | 2 cut(s) | 61, 402 |
| BstMAI | GTCTC | 3 cut(s) | 659, 966, 2827 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 408, 1133, 1142, 1462, 1595, 1838, 2293, 2384, 3078 |
| BstNI | CCWGG | 7 cut(s) | 534, 784, 1311, 1520, 2043, 2612, 3035 |
| BstSCI | CCNGG | 7 cut(s) | 532, 782, 1309, 1518, 2041, 2610, 3033 |
| BstSFI | CTRYAG | 7 cut(s) | 1689, 1752, 1871, 2160, 2365, 2388, 2940 |
| BstV2I | GAAGAC | 3 cut(s) | 470, 613, 2333 |
| BstX2I | RGATCY | 3 cut(s) | 586, 1306, 1415 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 267 |
| BstYI | RGATCY | 3 cut(s) | 586, 1306, 1415 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2535 |
| BsuI | GTATCC | 1 cut(s) | 2608 |
| BsuRI | GGCC | 9 cut(s) | 828, 874, 2315, 2378, 2829, 2907, 2918, 2985, 3032 |
| BtgI | CCRYGG | 1 cut(s) | 163 |
| BtrI | CACGTC | 1 cut(s) | 1469 |
| BtsCI | GGATG | 5 cut(s) | 1645, 1852, 1888, 2035, 2686 |
| BtsI | GCAGTG | 3 cut(s) | 471, 2747, 2974 |
| BveI | ACCTGC | 3 cut(s) | 2167, 2869, 3025 |
| Cac8I | GCNNGC | 5 cut(s) | 37, 1053, 2289, 2313, 2940 |
| CaiI | CAGNNNCTG | 2 cut(s) | 908, 1310 |
| CciI | TCATGA | 2 cut(s) | 2449, 2482 |
| CfoI | GCGC | 2 cut(s) | 61, 402 |
| Cfr10I | RCCGGY | 2 cut(s) | 35, 1589 |
| Cfr13I | GGNCC | 7 cut(s) | 873, 1086, 1473, 2045, 2377, 2827, 3031 |
| CseI | GACGC | 1 cut(s) | 34 |
| EaeI | YGGCCR | 3 cut(s) | 2313, 2905, 2916 |
| Eam1104I | CTCTTC | 5 cut(s) | 165, 577, 1545, 1788, 2535 |
| EarI | CTCTTC | 5 cut(s) | 165, 577, 1545, 1788, 2535 |
| Ecl136II | GAGCTC | 2 cut(s) | 15, 2053 |
| Eco130I | CCWWGG | 4 cut(s) | 123, 1203, 1761, 2219 |
| Eco24I | GRGCYC | 2 cut(s) | 17, 2055 |
| Eco31I | GGTCTC | 1 cut(s) | 659 |
| Eco32I | GATATC | 1 cut(s) | 1686 |
| Eco47I | GGWCC | 3 cut(s) | 1086, 1473, 2045 |
| Eco53kI | GAGCTC | 2 cut(s) | 15, 2053 |
| Eco57I | CTGAAG | 2 cut(s) | 819, 1350 |
| Eco81I | CCTNAGG | 1 cut(s) | 2535 |
| Eco88I | CYCGRG | 1 cut(s) | 2824 |
| EcoICRI | GAGCTC | 2 cut(s) | 15, 2053 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3072 |
| EcoRI | GAATTC | 2 cut(s) | 2845, 3001 |
| EcoRII | CCWGG | 7 cut(s) | 532, 782, 1309, 1518, 2041, 2610, 3033 |
| EcoRV | GATATC | 1 cut(s) | 1686 |
| EcoT14I | CCWWGG | 4 cut(s) | 123, 1203, 1761, 2219 |
| EcoT22I | ATGCAT | 2 cut(s) | 1645, 1888 |
| EcoT38I | GRGCYC | 2 cut(s) | 17, 2055 |
| ErhI | CCWWGG | 4 cut(s) | 123, 1203, 1761, 2219 |
| FaqI | GGGAC | 1 cut(s) | 1139 |
| FauI | CCCGC | 2 cut(s) | 40, 1825 |
| FauNDI | CATATG | 1 cut(s) | 887 |
| FokI | GGATG | 5 cut(s) | 1652, 1859, 1895, 2042, 2693 |
| FriOI | GRGCYC | 2 cut(s) | 17, 2055 |
| FspBI | CTAG | 7 cut(s) | 830, 920, 1017, 1554, 1563, 1797, 1806 |
| GlaI | GCGC | 2 cut(s) | 60, 401 |
| GsaI | CCCAGC | 3 cut(s) | 1494, 2295, 2430 |
| GsuI | CTGGAG | 3 cut(s) | 61, 681, 885 |
| HaeIII | GGCC | 9 cut(s) | 828, 874, 2315, 2378, 2829, 2907, 2918, 2985, 3032 |
| HapII | CCGG | 4 cut(s) | 36, 1590, 1895, 2865 |
| HgaI | GACGC | 1 cut(s) | 34 |
| HhaI | GCGC | 2 cut(s) | 61, 402 |
| Hin6I | GCGC | 2 cut(s) | 59, 400 |
| HinP1I | GCGC | 2 cut(s) | 59, 400 |
| HincII | GTYRAC | 2 cut(s) | 720, 1917 |
| HindII | GTYRAC | 2 cut(s) | 720, 1917 |
| HindIII | AAGCTT | 1 cut(s) | 1454 |
| HpaI | GTTAAC | 1 cut(s) | 1917 |
| HpaII | CCGG | 4 cut(s) | 36, 1590, 1895, 2865 |
| HphI | GGTGA | 8 cut(s) | 179, 772, 1583, 1826, 2675, 2710, 2757, 2784 |
| Hpy166II | GTNNAC | 6 cut(s) | 436, 674, 720, 1917, 2460, 3059 |
| Hpy8I | GTNNAC | 6 cut(s) | 436, 674, 720, 1917, 2460, 3059 |
| Hpy99I | CGWCG | 1 cut(s) | 1473 |
| HpyAV | CCTTC | 5 cut(s) | 306, 1022, 2104, 2484, 2560 |
| HpyCH4IV | ACGT | 4 cut(s) | 1072, 1468, 1788, 1967 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 408, 1133, 1142, 1462, 1595, 1838, 2293, 2384, 3078 |
| HpySE526I | ACGT | 4 cut(s) | 1072, 1468, 1788, 1967 |
| HspAI | GCGC | 2 cut(s) | 59, 400 |
| KroI | GCCGGC | 1 cut(s) | 35 |
| KroNI | GCCGGC | 1 cut(s) | 37 |
| KspAI | GTTAAC | 1 cut(s) | 1917 |
| LguI | GCTCTTC | 2 cut(s) | 165, 1545 |
| LmnI | GCTCC | 8 cut(s) | 20, 33, 42, 632, 904, 1141, 1301, 1862 |
| MaeI | CTAG | 7 cut(s) | 830, 920, 1017, 1554, 1563, 1797, 1806 |
| MaeII | ACGT | 4 cut(s) | 1072, 1468, 1788, 1967 |
| MbiI | CCGCTC | 1 cut(s) | 627 |
| MfeI | CAATTG | 2 cut(s) | 857, 2831 |
| MflI | RGATCY | 3 cut(s) | 586, 1306, 1415 |
| MhlI | GDGCHC | 3 cut(s) | 17, 698, 2055 |
| MlsI | TGGCCA | 2 cut(s) | 2315, 2918 |
| MluNI | TGGCCA | 2 cut(s) | 2315, 2918 |
| MlyI | GAGTC | 3 cut(s) | 1342, 1396, 1955 |
| MmeI | TCCRAC | 6 cut(s) | 248, 289, 1163, 1264, 1278, 2535 |
| Mox20I | TGGCCA | 2 cut(s) | 2315, 2918 |
| Mph1103I | ATGCAT | 2 cut(s) | 1645, 1888 |
| MroNI | GCCGGC | 1 cut(s) | 35 |
| MroXI | GAANNNNTTC | 3 cut(s) | 113, 929, 2529 |
| MscI | TGGCCA | 2 cut(s) | 2315, 2918 |
| MseI | TTAA | 6 cut(s) | 1169, 1458, 1916, 1952, 2259, 2649 |
| MslI | CAYNNNNRTG | 3 cut(s) | 476, 615, 1170 |
| Msp20I | TGGCCA | 2 cut(s) | 2315, 2918 |
| MspA1I | CMGCKG | 3 cut(s) | 1145, 2165, 2573 |
| MspCI | CTTAAG | 1 cut(s) | 2258 |
| MspI | CCGG | 4 cut(s) | 36, 1590, 1895, 2865 |
| MspR9I | CCNGG | 7 cut(s) | 534, 784, 1311, 1520, 2043, 2612, 3035 |
| MunI | CAATTG | 2 cut(s) | 857, 2831 |
| Mva1269I | GAATGC | 1 cut(s) | 300 |
| MvaI | CCWGG | 7 cut(s) | 534, 784, 1311, 1520, 2043, 2612, 3035 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 408, 1133, 1142, 1462, 1595, 1838, 2293, 2384, 3078 |
| NaeI | GCCGGC | 1 cut(s) | 37 |
| NdeI | CATATG | 1 cut(s) | 887 |
| NgoMIV | GCCGGC | 1 cut(s) | 35 |
| NlaIV | GGNNCC | 7 cut(s) | 29, 703, 900, 1137, 1297, 1989, 2016 |
| NmuCI | GTSAC | 7 cut(s) | 7, 422, 469, 778, 2589, 2716, 2783 |
| NsiI | ATGCAT | 2 cut(s) | 1645, 1888 |
| NspV | TTCGAA | 2 cut(s) | 2231, 2344 |
| OliI | CACNNNNGTG | 1 cut(s) | 476 |
| PagI | TCATGA | 2 cut(s) | 2449, 2482 |
| PaqCI | CACCTGC | 1 cut(s) | 2869 |
| PciSI | GCTCTTC | 2 cut(s) | 165, 1545 |
| PctI | GAATGC | 1 cut(s) | 300 |
| PdiI | GCCGGC | 1 cut(s) | 37 |
| PdmI | GAANNNNTTC | 3 cut(s) | 113, 929, 2529 |
| PfeI | GAWTC | 7 cut(s) | 453, 940, 2144, 2393, 2405, 2489, 2581 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 611, 1733, 2759, 2914 |
| PfoI | TCCNGGA | 1 cut(s) | 2610 |
| PleI | GAGTC | 3 cut(s) | 1342, 1395, 1954 |
| PpsI | GAGTC | 3 cut(s) | 1342, 1395, 1954 |
| PsiI | TTATAA | 1 cut(s) | 2468 |
| Psp124BI | GAGCTC | 2 cut(s) | 17, 2055 |
| Psp6I | CCWGG | 7 cut(s) | 532, 782, 1309, 1518, 2041, 2610, 3033 |
| PspFI | CCCAGC | 3 cut(s) | 1490, 2291, 2426 |
| PspGI | CCWGG | 7 cut(s) | 532, 782, 1309, 1518, 2041, 2610, 3033 |
| PspN4I | GGNNCC | 7 cut(s) | 29, 703, 900, 1137, 1297, 1989, 2016 |
| PspPI | GGNCC | 7 cut(s) | 873, 1086, 1473, 2045, 2377, 2827, 3031 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2247, 2279 |
| PstI | CTGCAG | 3 cut(s) | 1875, 2164, 2944 |
| PstNI | CAGNNNCTG | 2 cut(s) | 908, 1310 |
| PsuI | RGATCY | 3 cut(s) | 586, 1306, 1415 |
| PvuII | CAGCTG | 3 cut(s) | 1145, 2165, 2573 |
| RseI | CAYNNNNRTG | 3 cut(s) | 476, 615, 1170 |
| SacI | GAGCTC | 2 cut(s) | 17, 2055 |
| SapI | GCTCTTC | 2 cut(s) | 165, 1545 |
| SaqAI | TTAA | 6 cut(s) | 1169, 1458, 1916, 1952, 2259, 2649 |
| Sau96I | GGNCC | 7 cut(s) | 873, 1086, 1473, 2045, 2377, 2827, 3031 |
| SbfI | CCTGCAGG | 1 cut(s) | 2944 |
| SchI | GAGTC | 3 cut(s) | 1342, 1396, 1955 |
| ScrFI | CCNGG | 7 cut(s) | 534, 784, 1311, 1520, 2043, 2612, 3035 |
| SdaI | CCTGCAGG | 1 cut(s) | 2944 |
| SduI | GDGCHC | 3 cut(s) | 17, 698, 2055 |
| SfcI | CTRYAG | 7 cut(s) | 1689, 1752, 1871, 2160, 2365, 2388, 2940 |
| SfuI | TTCGAA | 2 cut(s) | 2231, 2344 |
| SinI | GGWCC | 3 cut(s) | 1086, 1473, 2045 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 476, 615, 1170 |
| SmlI | CTYRAG | 2 cut(s) | 2258, 2516 |
| SmoI | CTYRAG | 2 cut(s) | 2258, 2516 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 2944 |
| SsiI | CCGC | 6 cut(s) | 33, 439, 530, 625, 1049, 1832 |
| SspMI | CTAG | 7 cut(s) | 830, 920, 1017, 1554, 1563, 1797, 1806 |
| SstI | GAGCTC | 2 cut(s) | 17, 2055 |
| StyD4I | CCNGG | 7 cut(s) | 532, 782, 1309, 1518, 2041, 2610, 3033 |
| StyI | CCWWGG | 4 cut(s) | 123, 1203, 1761, 2219 |
| TaiI | ACGT | 4 cut(s) | 1075, 1471, 1791, 1970 |
| TaqII | GACCGA | 1 cut(s) | 1461 |
| TatI | WGTACW | 8 cut(s) | 318, 350, 1057, 1531, 1693, 1744, 1931, 2459 |
| TfiI | GAWTC | 7 cut(s) | 453, 940, 2144, 2393, 2405, 2489, 2581 |
| Tru1I | TTAA | 6 cut(s) | 1169, 1458, 1916, 1952, 2259, 2649 |
| Tru9I | TTAA | 6 cut(s) | 1169, 1458, 1916, 1952, 2259, 2649 |
| TseFI | GTSAC | 7 cut(s) | 7, 422, 469, 778, 2589, 2716, 2783 |
| Tsp45I | GTSAC | 7 cut(s) | 7, 422, 469, 778, 2589, 2716, 2783 |
| TspGWI | ACGGA | 5 cut(s) | 107, 359, 579, 635, 2986 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 611, 1733, 2759, 2914 |
| Vha464I | CTTAAG | 1 cut(s) | 2258 |
| VpaK11BI | GGWCC | 3 cut(s) | 1086, 1473, 2045 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3072 |
| XapI | RAATTY | 7 cut(s) | 187, 2087, 2667, 2845, 2923, 2947, 3001 |
| XmnI | GAANNNNTTC | 3 cut(s) | 113, 929, 2529 |
| XspI | CTAG | 7 cut(s) | 830, 920, 1017, 1554, 1563, 1797, 1806 |
| Zsp2I | ATGCAT | 2 cut(s) | 1645, 1888 |