Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002094

Physical Location & Seq

Genomic Coordinates Forward (+)

15769508 .. 15777305

Gene Structure 7798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG182000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3033 bp

ATGATTTACACGGATTTGGAAACTGGGAAAAAGTTCTTCTCCAAGGACGATGTTATACGCTATACTAAAAAAGCCACCAACCGTGGTGAAGAGCCTCAGCGTACAAATACCAAAAAACCCTCAGATAGAAGTCATTCGCAACTGGCAGCAAACACAGATGAATATCCTGAATGGTTGCCAGATGGTTGGAAAGTCGAATTGAGAACTCGAAAAACTGGCATTCAAGTTGGAAGGGAGTACAAGTGTTACATTGATCCGTTGACGGAATGTACATTTTATTCCAAGCCAGAGGTATTTCGATACCTGAAAACTGTAAAGCGCAAGAGCTGCAAATCCAGAAGTCACAAAATGGTAAACCGCAAGAGATGTATAATCAAAACGAAGACTGTCACTGCCGTGCAGTTGCCAAGCAAAGTTGTGGTTGAGAAGCATAATGTGGAAGATTTACCGCCAGGGTGGATATTGGAGGTCAAAGTTAGAAAGGTTGCAAATCGAATTAGAAGAGATCCGTATTACACTGATCCAGTGCATGGATATGTCTTCCGCTCCAAAAAGGAAGTTATCCGTTACCTACAAACTGGAGAGACCAGCAAACATACAATCAAACCAAAGAGCATGGGCACCAATGATCTAAAGTTGACTGATGATGAAATTGCACTGTCATCTGCAACGAAAAAGCAAAAATTGAAGCACCCTGTCACCAGGCAGCAGCTTTCTGAAGCTAAAAAGAGTTATGAACTGAGTGGCCTAGACTTACAAGAAACTGAAAACTCCCAATTGCAAGACAAGAGGCCCGCTGAAAGCATATGTGCTTTGGCTCCAGTTACTGAGGTTATCCAAGAGAAGCATTTCACTGAGAATCTGGTTGAAGAATGTGTAGAAACTAAGGGAGACTGTTCCCCAAGATGGTCATCACAGCCAAAAGCTGAACCATCTAGCAAACACGAAGGCAAAAGGTCATCACAACCGCAAGCTGTACTCTCTAACAAACGTGAGGCTAAAAGGTCCAAGTTGCAAGACAAGAGGGTAACTGATGAAAGCAAAGCTGCTTTGGCTCCGACAGCTGAGGCAGTCCCACATAAGCATTTAAGTGAGAGTGTGGTTGAAAATTGTGCCAAAACCAAGGAAGATTGTTCTCCAAGCAAGTCATTACAGCCAAAAGCTGAACTCTCCAACAAGTGTGAAGATAAAATTGCATTGGTTGGAGTTGATGGCTCCTCAACAGATCCTGGCAAAGTGGTTTTTTCTGAAGATGACCCTGCTTTGACTCCTGCTGCTAACACCTTGAATAAGAACTCACATATGAGTCAGATGGAAAGGAGAGACACAAGGAGATCCCAAATAGATGCAAGAAAATCGAAACAGAATGAAAAGCTTAATTTGCCACGTCGGTCCTCAAAACGACTGGCTGGGCTTGAACCAGAGCCAGTAAATAGCGTGGTTTCCACTGTTCAGGCTCTTCAAGTTACAACTAGAAAGTCTAGTAAAGGTGATGGCAGTCGAGATGCCGGTTTGGCTTTAGATGATTTTGTAAATAGAGCATCTCAGGAGCTTGGGGATGCATCAGAAACAGAGGTTGCACATCATACTTTAGCTGGAATAATATCTACAGTACAAGGAGAGCCATTGAGCAAGGTCAAGAGGCCATTTGATGGTCTTGAAGTACAGCCTGTAGATACCTTGGTTTCCAATGAACAAACTCTTCACGTTGCAACTAGAAAGTCTAGTAGAGGTGATGCAAGTCAAGATGCGGGTTTGGCTTCAGATGATTTTATCAATGGAGCATCTCTGCAGCTTGGGGATGCATCAGAACCGGAGGCTGCACATGATAGGTTAACTGACATAAACTGTACATCACATGGAGAGTCATTAAACAAGGGCAAGACGTTTCTTGATGGCCAAGTGGTTCCTAAAGAGCAACATCATAGGCTGGAACCTGAGAAAATGGATGCTGAGAAGCCTGGACCAGAGCTCTGCTTTCTGTTTGGATCAGACCCATGCTTAGAATTTGCCTTCAAAACCCTTACTGGCGAATTGCCAATAGCTGATGCTGTGGATAACGAATCTATTTTGAAACCTGCAGCTGATACAGTGCAAAAAGAGAACACACTTGAAACTGGGCGCTGCAGTAGAAAACCAAGGGCAATTTCGAACAAATCTAAGAAAGCTAAAGAACTTAAGTTACCTCATCGGACTTCAAAACGGCTGGCTGGGCTTGAACCTGAGCTGCTTGCCAAACCTATGTCCAGTGAAAGAGGTCTTCGAAATGCTACGGCAAAGTCCTGTAGAAGTAAAGCCCTCCAAGCTGTAGATTCTGCACATGAATCATCTCAGCAGTTTGAGGCTGGGCAAGAGATCAAGGTTGCTCATGATTTGTGTACTGTTATAAACCCTTCAGTTCATGAGGAATCATTGAACAAGATTGAGAAATCTCTCAAGGACGAACCTATTCCTGAGGAGAAACCCCGTGAGTTGGAAATTGAGAAGGCAGCTGTTGAGAATCCAGTGTCACAGTTTTCATTCCCTTTCCTGGATACTTGGTCTGATCCATGCCTTGATTTTGCATTTAAGACCCTTACAGGTGAAATTCCGATAGAGGATGATTTGTTTCAGGGTTACTTTCAGGAAAACCTTGTCACCTCTCACAACCAAAGAGATAGCTTGGCACTGCCAGACTTTGGCTCACCTAATGTTTTCCAAAGTGACGTATCACCTCAGTTCGATGCACCAGAACAGTCTGTCTCGGGCCAATTGTTTCCCATGAATTCTTCTTTGCCACCTGCTGGAAATGTGAGCTTGTCAAATTGCAATGGGGTTGGGTTCGGCCAACAGTTGGCCACGAATTCTTCATTTCTGCCTGCAGGAAATTTGAGATTTTCAAGTGGCAGTGGGGTTGGTTCAGGCCAACATTTATCCGTGAATTCTTCATTCTTACCTGCAGGAAATGTGGGCCAGGCAAATTGGAGTGGGATTGGTACACAGAACCCTTGCTTAGGAAGCAAAAAGGATTTTCATGGAAAGGTGAAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

1010

Amino Acids

111.45

Weight (kDa)

8.2

Isoelectric Point (pI)

49.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	57 - 106	8.4e-06	Methyl-CpG binding domain
MBD	PF01429	149 - 195	2.7e-06	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63240
fragaria_vesca	FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01860 FvH4_5g01911 FvH4_5g01911
malus_domestica	MD06G1076800.v1.1 MD14G1098200.v1.1
prunus_persica	Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1 Prupe.5G094800_v2.0.a1
pyrus_communis	pycom06g07430 pycom06g07440 pycom14g09640
rosa_chinensis	RchiOBHm_Chr7g0198611 RchiOBHm_Chr7g0198661
rosa_laevigata	RLG00000003850 RLG00000003857
rosa_multiflora	Rmu_co8077932.1_g000001 Rmu_co8274787.1_g000001 Rmu_co8506873.1_g000001 Rmu_sc0000220.1_g000017 Rmu_sc0004229.1_g000004
rosa_roxburghii	Rroxscaffold_3G00257550 Rroxscaffold_3G00257620
rosa_rugosa	Rorug07G0048500 Rorug07G0049000 Rorug07G0049100 Rorug07G0049100
rosa_samantha	Rh4BG123200 Rh7AG172000 Rh7AG172600 Rh7BG175400 Rh7BG176100 Rh7CG181500 Rh7CG182000 Rh7DG174500 Rh7DG174900 Rh7DG175200
rosa_wichuraiana	Rw7G015090 Rw7G015150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2387
AarI	CACCTGC	1 cut(s)	2788
Acc36I	ACCTGC	3 cut(s)	2086, 2788, 2944
AccB1I	GGYRCC	1 cut(s)	620
AccB7I	CCANNNNNTGG	5 cut(s)	530, 1652, 2678, 2783, 2833
AccBSI	CCGCTC	1 cut(s)	546
AciI	CCGC	6 cut(s)	358, 449, 544, 795, 968, 1751
AclWI	GGATC	7 cut(s)	248, 500, 515, 1220, 1329, 1996, 2540
AcoI	YGGCCR	3 cut(s)	1897, 2824, 2835
AcsI	RAATTY	6 cut(s)	2006, 2586, 2764, 2842, 2866, 2920
AcuI	CTGAAG	4 cut(s)	738, 1269, 1746, 2379
AfaI	GTAC	9 cut(s)	103, 239, 271, 978, 1614, 1665, 1852, 2380, 2977
AfiI	CCNNNNNNNGG	9 cut(s)	530, 906, 1652, 2473, 2530, 2678, 2783, 2833, 2993
AflII	CTTAAG	1 cut(s)	2177
AjiI	CACGTC	1 cut(s)	1388
AjnI	CCWGG	6 cut(s)	451, 701, 1228, 1960, 2529, 2952
AjuI	GAANNNNNNNTTGG	2 cut(s)	2131, 2163
AleI	CACNNNNGTG	1 cut(s)	395
Alw21I	GWGCWC	1 cut(s)	1974
Alw26I	GTCTC	4 cut(s)	578, 885, 1317, 2746
AlwI	GGATC	7 cut(s)	248, 500, 515, 1220, 1329, 1996, 2540
AlwNI	CAGNNNCTG	2 cut(s)	827, 1229
Ama87I	CYCGRG	1 cut(s)	2743
AoxI	GGCC	9 cut(s)	745, 791, 1643, 1897, 2746, 2824, 2835, 2902, 2950
ApoI	RAATTY	6 cut(s)	2006, 2586, 2764, 2842, 2866, 2920
Asp700I	GAANNNNTTC	4 cut(s)	32, 133, 848, 2448
AspLEI	GCGC	2 cut(s)	321, 2124
AspS9I	GGNCC	6 cut(s)	792, 1005, 1392, 1964, 2746, 2950
AsuHPI	GGTGA	8 cut(s)	98, 691, 1502, 1745, 2594, 2629, 2676, 2703
AsuII	TTCGAA	2 cut(s)	2150, 2263
AvaI	CYCGRG	1 cut(s)	2743
AvaII	GGWCC	3 cut(s)	1005, 1392, 1964
AxyI	CCTNAGG	1 cut(s)	2454
BaeGI	GKGCMC	1 cut(s)	623
BaeI	ACNNNNGTAYC	2 cut(s)	1668, 1701
BalI	TGGCCA	2 cut(s)	1899, 2837
BanI	GGYRCC	1 cut(s)	620
BanII	GRGCYC	1 cut(s)	1974
BbsI	GAAGAC	3 cut(s)	389, 532, 2252
Bbv12I	GWGCWC	1 cut(s)	1974
BbvCI	CCTCAGC	2 cut(s)	96, 1065
BccI	CCATC	8 cut(s)	176, 900, 940, 1205, 1306, 1487, 1646, 1889
BceAI	ACGGC	3 cut(s)	380, 2219, 2289
BcgI	CGANNNNNNTGC	2 cut(s)	1338, 1372
BciT130I	CCWGG	6 cut(s)	453, 703, 1230, 1962, 2531, 2954
BciVI	GTATCC	1 cut(s)	2527
BcoDI	GTCTC	4 cut(s)	578, 885, 1317, 2746
BfaI	CTAG	6 cut(s)	749, 936, 1473, 1482, 1716, 1725
BfmI	CTRYAG	9 cut(s)	1608, 1671, 1790, 2079, 2125, 2284, 2307, 2859, 2937
BfoI	RGCGCY	1 cut(s)	2125
BfrI	CTTAAG	1 cut(s)	2177
BfuAI	ACCTGC	3 cut(s)	2086, 2788, 2944
BfuI	GTATCC	1 cut(s)	2527
BglI	GCCNNNNNGGC	1 cut(s)	1514
Bme1390I	CCNGG	6 cut(s)	453, 703, 1230, 1962, 2531, 2954
Bme18I	GGWCC	3 cut(s)	1005, 1392, 1964
BmeT110I	CYCGRG	1 cut(s)	2743
BmgBI	CACGTC	1 cut(s)	1388
BmgT120I	GGNCC	6 cut(s)	792, 1005, 1392, 1964, 2746, 2950
BmiI	GGNNCC	6 cut(s)	622, 819, 1056, 1216, 1908, 1935
BmrFI	CCNGG	6 cut(s)	453, 703, 1230, 1962, 2531, 2954
BmrI	ACTGGG	2 cut(s)	33, 2127
BmuI	ACTGGG	2 cut(s)	33, 2127
BpiI	GAAGAC	3 cut(s)	389, 532, 2252
BpmI	CTGGAG	2 cut(s)	600, 804
Bpu10I	CCTNAGC	4 cut(s)	96, 1065, 2223, 2992
Bpu14I	TTCGAA	2 cut(s)	2150, 2263
BpuEI	CTTGAG	1 cut(s)	2420
BsaBI	GATNNNNATC	2 cut(s)	162, 910
BsaI	GGTCTC	1 cut(s)	578
BsaJI	CCNNGG	6 cut(s)	42, 82, 452, 1122, 1680, 2138
BsaWI	WCCGGW	1 cut(s)	1813
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bsc4I	CCNNNNNNNGG	9 cut(s)	530, 906, 1652, 2473, 2530, 2678, 2783, 2833, 2993
Bse118I	RCCGGY	1 cut(s)	1508
Bse21I	CCTNAGG	1 cut(s)	2454
Bse3DI	GCAATG	1 cut(s)	2815
Bse8I	GATNNNNATC	2 cut(s)	162, 910
BseBI	CCWGG	6 cut(s)	453, 703, 1230, 1962, 2531, 2954
BseDI	CCNNGG	6 cut(s)	42, 82, 452, 1122, 1680, 2138
BseGI	GGATG	4 cut(s)	1564, 1807, 1954, 2605
BseJI	GATNNNNATC	2 cut(s)	162, 910
BseLI	CCNNNNNNNGG	9 cut(s)	530, 906, 1652, 2473, 2530, 2678, 2783, 2833, 2993
BseMI	GCAATG	1 cut(s)	2815
BseRI	GAGGAG	2 cut(s)	1207, 2471
BseSI	GKGCMC	1 cut(s)	623
BseYI	CCCAGC	3 cut(s)	1409, 2210, 2345
BsgI	GTGCAG	3 cut(s)	419, 1806, 2301
BshFI	GGCC	9 cut(s)	747, 793, 1645, 1899, 2748, 2826, 2837, 2904, 2952
BshNI	GGYRCC	1 cut(s)	620
BsiHKAI	GWGCWC	1 cut(s)	1974
BsiHKCI	CYCGRG	1 cut(s)	2743
BsiSI	CCGG	2 cut(s)	1509, 1814
BslFI	GGGAC	1 cut(s)	1058
BslI	CCNNNNNNNGG	9 cut(s)	530, 906, 1652, 2473, 2530, 2678, 2783, 2833, 2993
BsmAI	GTCTC	4 cut(s)	578, 885, 1317, 2746
BsmFI	GGGAC	1 cut(s)	1058
BsmI	GAATGC	1 cut(s)	219
BsnI	GGCC	9 cut(s)	747, 793, 1645, 1899, 2748, 2826, 2837, 2904, 2952
Bso31I	GGTCTC	1 cut(s)	578
BsoBI	CYCGRG	1 cut(s)	2743
Bsp119I	TTCGAA	2 cut(s)	2150, 2263
Bsp1286I	GDGCHC	2 cut(s)	623, 1974
Bsp1407I	TGTACA	2 cut(s)	269, 1850
Bsp143I	GATC	9 cut(s)	253, 505, 520, 628, 1225, 1334, 1988, 2355, 2545
BspACI	CCGC	6 cut(s)	358, 449, 544, 795, 968, 1751
BspANI	GGCC	9 cut(s)	747, 793, 1645, 1899, 2748, 2826, 2837, 2904, 2952
BspHI	TCATGA	2 cut(s)	2368, 2401
BspLI	GGNNCC	6 cut(s)	622, 819, 1056, 1216, 1908, 1935
BspMAI	CTGCAG	5 cut(s)	1794, 2083, 2129, 2863, 2941
BspMI	ACCTGC	3 cut(s)	2086, 2788, 2944
BspPI	GGATC	7 cut(s)	248, 500, 515, 1220, 1329, 1996, 2540
BspQI	GCTCTTC	2 cut(s)	84, 1464
BspT104I	TTCGAA	2 cut(s)	2150, 2263
BspT107I	GGYRCC	1 cut(s)	620
BspTI	CTTAAG	1 cut(s)	2177
BspTNI	GGTCTC	1 cut(s)	578
BsrBI	CCGCTC	1 cut(s)	546
BsrDI	GCAATG	1 cut(s)	2815
BsrFI	RCCGGY	1 cut(s)	1508
BsrGI	TGTACA	2 cut(s)	269, 1850
BssAI	RCCGGY	1 cut(s)	1508
BssECI	CCNNGG	6 cut(s)	42, 82, 452, 1122, 1680, 2138
BssMI	GATC	9 cut(s)	253, 505, 520, 628, 1225, 1334, 1988, 2355, 2545
BssT1I	CCWWGG	4 cut(s)	42, 1122, 1680, 2138
Bst2UI	CCWGG	6 cut(s)	453, 703, 1230, 1962, 2531, 2954
Bst6I	CTCTTC	4 cut(s)	84, 496, 1464, 1707
BstAFI	CTTAAG	1 cut(s)	2177
BstAPI	GCANNNNNTGC	1 cut(s)	327
BstAUI	TGTACA	2 cut(s)	269, 1850
BstBI	TTCGAA	2 cut(s)	2150, 2263
BstC8I	GCNNGC	5 cut(s)	795, 972, 2208, 2232, 2859
BstDSI	CCRYGG	1 cut(s)	82
BstENI	CCTNNNNNAGG	1 cut(s)	2991
BstF5I	GGATG	4 cut(s)	1564, 1807, 1954, 2605
BstH2I	RGCGCY	1 cut(s)	2125
BstHHI	GCGC	2 cut(s)	321, 2124
BstKTI	GATC	9 cut(s)	256, 508, 523, 631, 1228, 1337, 1991, 2358, 2548
BstMAI	GTCTC	4 cut(s)	578, 885, 1317, 2746
BstMBI	GATC	9 cut(s)	253, 505, 520, 628, 1225, 1334, 1988, 2355, 2545
BstMWI	GCNNNNNNNGC	9 cut(s)	327, 1052, 1061, 1381, 1514, 1757, 2212, 2303, 2997
BstNI	CCWGG	6 cut(s)	453, 703, 1230, 1962, 2531, 2954
BstSCI	CCNGG	6 cut(s)	451, 701, 1228, 1960, 2529, 2952
BstSFI	CTRYAG	9 cut(s)	1608, 1671, 1790, 2079, 2125, 2284, 2307, 2859, 2937
BstSLI	GKGCMC	1 cut(s)	623
BstV2I	GAAGAC	3 cut(s)	389, 532, 2252
BstX2I	RGATCY	3 cut(s)	505, 1225, 1334
BstXI	CCANNNNNNTGG	1 cut(s)	186
BstYI	RGATCY	3 cut(s)	505, 1225, 1334
Bsu36I	CCTNAGG	1 cut(s)	2454
BsuI	GTATCC	1 cut(s)	2527
BsuRI	GGCC	9 cut(s)	747, 793, 1645, 1899, 2748, 2826, 2837, 2904, 2952
BtgI	CCRYGG	1 cut(s)	82
BtrI	CACGTC	1 cut(s)	1388
BtsCI	GGATG	4 cut(s)	1564, 1807, 1954, 2605
BtsI	GCAGTG	3 cut(s)	390, 2666, 2893
BveI	ACCTGC	3 cut(s)	2086, 2788, 2944
Cac8I	GCNNGC	5 cut(s)	795, 972, 2208, 2232, 2859
CaiI	CAGNNNCTG	2 cut(s)	827, 1229
CciI	TCATGA	2 cut(s)	2368, 2401
CfoI	GCGC	2 cut(s)	321, 2124
Cfr10I	RCCGGY	1 cut(s)	1508
Cfr13I	GGNCC	6 cut(s)	792, 1005, 1392, 1964, 2746, 2950
Csp6I	GTAC	9 cut(s)	102, 238, 270, 977, 1613, 1664, 1851, 2379, 2976
CviQI	GTAC	9 cut(s)	102, 238, 270, 977, 1613, 1664, 1851, 2379, 2976
DpnI	GATC	9 cut(s)	255, 507, 522, 630, 1227, 1336, 1990, 2357, 2547
DpnII	GATC	9 cut(s)	253, 505, 520, 628, 1225, 1334, 1988, 2355, 2545
EaeI	YGGCCR	3 cut(s)	1897, 2824, 2835
Eam1104I	CTCTTC	4 cut(s)	84, 496, 1464, 1707
EarI	CTCTTC	4 cut(s)	84, 496, 1464, 1707
Ecl136II	GAGCTC	1 cut(s)	1972
Eco130I	CCWWGG	4 cut(s)	42, 1122, 1680, 2138
Eco24I	GRGCYC	1 cut(s)	1974
Eco31I	GGTCTC	1 cut(s)	578
Eco47I	GGWCC	3 cut(s)	1005, 1392, 1964
Eco53kI	GAGCTC	1 cut(s)	1972
Eco57I	CTGAAG	4 cut(s)	738, 1269, 1746, 2379
Eco81I	CCTNAGG	1 cut(s)	2454
Eco88I	CYCGRG	1 cut(s)	2743
EcoICRI	GAGCTC	1 cut(s)	1972
EcoNI	CCTNNNNNAGG	1 cut(s)	2991
EcoRI	GAATTC	3 cut(s)	2764, 2842, 2920
EcoRII	CCWGG	6 cut(s)	451, 701, 1228, 1960, 2529, 2952
EcoT14I	CCWWGG	4 cut(s)	42, 1122, 1680, 2138
EcoT22I	ATGCAT	2 cut(s)	1564, 1807
EcoT38I	GRGCYC	1 cut(s)	1974
ErhI	CCWWGG	4 cut(s)	42, 1122, 1680, 2138
FaqI	GGGAC	1 cut(s)	1058
FauI	CCCGC	2 cut(s)	802, 1744
FauNDI	CATATG	2 cut(s)	806, 1302
FokI	GGATG	4 cut(s)	1571, 1814, 1961, 2612
FriOI	GRGCYC	1 cut(s)	1974
FspBI	CTAG	6 cut(s)	749, 936, 1473, 1482, 1716, 1725
GlaI	GCGC	2 cut(s)	320, 2123
GsaI	CCCAGC	3 cut(s)	1413, 2214, 2349
GsuI	CTGGAG	2 cut(s)	600, 804
HaeII	RGCGCY	1 cut(s)	2125
HaeIII	GGCC	9 cut(s)	747, 793, 1645, 1899, 2748, 2826, 2837, 2904, 2952
HapII	CCGG	2 cut(s)	1509, 1814
HhaI	GCGC	2 cut(s)	321, 2124
Hin6I	GCGC	2 cut(s)	319, 2122
HinP1I	GCGC	2 cut(s)	319, 2122
HincII	GTYRAC	3 cut(s)	261, 639, 1836
HindII	GTYRAC	3 cut(s)	261, 639, 1836
HindIII	AAGCTT	1 cut(s)	1373
HinfI	GANTC	9 cut(s)	859, 1267, 1306, 1865, 2063, 2312, 2324, 2408, 2500
HpaI	GTTAAC	1 cut(s)	1836
HpaII	CCGG	2 cut(s)	1509, 1814
HphI	GGTGA	8 cut(s)	98, 691, 1502, 1745, 2594, 2629, 2676, 2703
Hpy166II	GTNNAC	6 cut(s)	261, 355, 639, 1836, 2379, 2978
Hpy8I	GTNNAC	6 cut(s)	261, 355, 639, 1836, 2379, 2978
Hpy99I	CGWCG	1 cut(s)	1392
HpyAV	CCTTC	5 cut(s)	225, 941, 2023, 2403, 2479
HpyCH4IV	ACGT	5 cut(s)	991, 1387, 1707, 1886, 2706
HpyF10VI	GCNNNNNNNGC	9 cut(s)	327, 1052, 1061, 1381, 1514, 1757, 2212, 2303, 2997
HpySE526I	ACGT	5 cut(s)	991, 1387, 1707, 1886, 2706
HspAI	GCGC	2 cut(s)	319, 2122
KspAI	GTTAAC	1 cut(s)	1836
Kzo9I	GATC	9 cut(s)	253, 505, 520, 628, 1225, 1334, 1988, 2355, 2545
LguI	GCTCTTC	2 cut(s)	84, 1464
LmnI	GCTCC	6 cut(s)	551, 823, 1060, 1220, 1549, 1781
MaeI	CTAG	6 cut(s)	749, 936, 1473, 1482, 1716, 1725
MaeII	ACGT	5 cut(s)	991, 1387, 1707, 1886, 2706
MalI	GATC	9 cut(s)	255, 507, 522, 630, 1227, 1336, 1990, 2357, 2547
MbiI	CCGCTC	1 cut(s)	546
MboI	GATC	9 cut(s)	253, 505, 520, 628, 1225, 1334, 1988, 2355, 2545
MfeI	CAATTG	2 cut(s)	776, 2750
MflI	RGATCY	3 cut(s)	505, 1225, 1334
MhlI	GDGCHC	2 cut(s)	623, 1974
MlsI	TGGCCA	2 cut(s)	1899, 2837
MluNI	TGGCCA	2 cut(s)	1899, 2837
MlyI	GAGTC	3 cut(s)	1261, 1315, 1874
MmeI	TCCRAC	6 cut(s)	167, 208, 1082, 1183, 1197, 2454
Mox20I	TGGCCA	2 cut(s)	1899, 2837
Mph1103I	ATGCAT	2 cut(s)	1564, 1807
MroXI	GAANNNNTTC	4 cut(s)	32, 133, 848, 2448
MscI	TGGCCA	2 cut(s)	1899, 2837
MseI	TTAA	6 cut(s)	1088, 1377, 1835, 1871, 2178, 2568
MslI	CAYNNNNRTG	3 cut(s)	395, 534, 1089
Msp20I	TGGCCA	2 cut(s)	1899, 2837
MspA1I	CMGCKG	4 cut(s)	797, 1064, 2084, 2492
MspCI	CTTAAG	1 cut(s)	2177
MspI	CCGG	2 cut(s)	1509, 1814
MspR9I	CCNGG	6 cut(s)	453, 703, 1230, 1962, 2531, 2954
MunI	CAATTG	2 cut(s)	776, 2750
Mva1269I	GAATGC	1 cut(s)	219
MvaI	CCWGG	6 cut(s)	453, 703, 1230, 1962, 2531, 2954
MwoI	GCNNNNNNNGC	9 cut(s)	327, 1052, 1061, 1381, 1514, 1757, 2212, 2303, 2997
NdeI	CATATG	2 cut(s)	806, 1302
NdeII	GATC	9 cut(s)	253, 505, 520, 628, 1225, 1334, 1988, 2355, 2545
NlaIV	GGNNCC	6 cut(s)	622, 819, 1056, 1216, 1908, 1935
NmuCI	GTSAC	6 cut(s)	341, 388, 697, 2508, 2635, 2702
NsiI	ATGCAT	2 cut(s)	1564, 1807
NspV	TTCGAA	2 cut(s)	2150, 2263
OliI	CACNNNNGTG	1 cut(s)	395
PagI	TCATGA	2 cut(s)	2368, 2401
PaqCI	CACCTGC	1 cut(s)	2788
PciSI	GCTCTTC	2 cut(s)	84, 1464
PctI	GAATGC	1 cut(s)	219
PdmI	GAANNNNTTC	4 cut(s)	32, 133, 848, 2448
PfeI	GAWTC	6 cut(s)	859, 2063, 2312, 2324, 2408, 2500
PflMI	CCANNNNNTGG	5 cut(s)	530, 1652, 2678, 2783, 2833
PfoI	TCCNGGA	1 cut(s)	2529
PleI	GAGTC	3 cut(s)	1261, 1314, 1873
PpsI	GAGTC	3 cut(s)	1261, 1314, 1873
PsiI	TTATAA	1 cut(s)	2387
Psp124BI	GAGCTC	1 cut(s)	1974
Psp6I	CCWGG	6 cut(s)	451, 701, 1228, 1960, 2529, 2952
PspFI	CCCAGC	3 cut(s)	1409, 2210, 2345
PspGI	CCWGG	6 cut(s)	451, 701, 1228, 1960, 2529, 2952
PspN4I	GGNNCC	6 cut(s)	622, 819, 1056, 1216, 1908, 1935
PspPI	GGNCC	6 cut(s)	792, 1005, 1392, 1964, 2746, 2950
PsrI	GAACNNNNNNTAC	2 cut(s)	2166, 2198
PstI	CTGCAG	5 cut(s)	1794, 2083, 2129, 2863, 2941
PstNI	CAGNNNCTG	2 cut(s)	827, 1229
PsuI	RGATCY	3 cut(s)	505, 1225, 1334
PvuII	CAGCTG	3 cut(s)	1064, 2084, 2492
RsaI	GTAC	9 cut(s)	103, 239, 271, 978, 1614, 1665, 1852, 2380, 2977
RsaNI	GTAC	9 cut(s)	102, 238, 270, 977, 1613, 1664, 1851, 2379, 2976
RseI	CAYNNNNRTG	3 cut(s)	395, 534, 1089
SacI	GAGCTC	1 cut(s)	1974
SapI	GCTCTTC	2 cut(s)	84, 1464
SaqAI	TTAA	6 cut(s)	1088, 1377, 1835, 1871, 2178, 2568
Sau3AI	GATC	9 cut(s)	253, 505, 520, 628, 1225, 1334, 1988, 2355, 2545
Sau96I	GGNCC	6 cut(s)	792, 1005, 1392, 1964, 2746, 2950
SbfI	CCTGCAGG	2 cut(s)	2863, 2941
SchI	GAGTC	3 cut(s)	1261, 1315, 1874
ScrFI	CCNGG	6 cut(s)	453, 703, 1230, 1962, 2531, 2954
SdaI	CCTGCAGG	2 cut(s)	2863, 2941
SduI	GDGCHC	2 cut(s)	623, 1974
SfcI	CTRYAG	9 cut(s)	1608, 1671, 1790, 2079, 2125, 2284, 2307, 2859, 2937
SfuI	TTCGAA	2 cut(s)	2150, 2263
SinI	GGWCC	3 cut(s)	1005, 1392, 1964
SmiMI	CAYNNNNRTG	3 cut(s)	395, 534, 1089
SmlI	CTYRAG	2 cut(s)	2177, 2435
SmoI	CTYRAG	2 cut(s)	2177, 2435
Sse8387I	CCTGCAGG	2 cut(s)	2863, 2941
SsiI	CCGC	6 cut(s)	358, 449, 544, 795, 968, 1751
SspMI	CTAG	6 cut(s)	749, 936, 1473, 1482, 1716, 1725
SstI	GAGCTC	1 cut(s)	1974
StyD4I	CCNGG	6 cut(s)	451, 701, 1228, 1960, 2529, 2952
StyI	CCWWGG	4 cut(s)	42, 1122, 1680, 2138
TaiI	ACGT	5 cut(s)	994, 1390, 1710, 1889, 2709
TaqI	TCGA	9 cut(s)	195, 208, 298, 493, 1358, 1501, 2150, 2263, 2721
TaqII	GACCGA	1 cut(s)	1380
TatI	WGTACW	7 cut(s)	237, 269, 976, 1612, 1663, 1850, 2378
TfiI	GAWTC	6 cut(s)	859, 2063, 2312, 2324, 2408, 2500
Tru1I	TTAA	6 cut(s)	1088, 1377, 1835, 1871, 2178, 2568
Tru9I	TTAA	6 cut(s)	1088, 1377, 1835, 1871, 2178, 2568
TseFI	GTSAC	6 cut(s)	341, 388, 697, 2508, 2635, 2702
Tsp45I	GTSAC	6 cut(s)	341, 388, 697, 2508, 2635, 2702
TspGWI	ACGGA	6 cut(s)	26, 246, 278, 498, 554, 2905
Van91I	CCANNNNNTGG	5 cut(s)	530, 1652, 2678, 2783, 2833
Vha464I	CTTAAG	1 cut(s)	2177
VpaK11BI	GGWCC	3 cut(s)	1005, 1392, 1964
XagI	CCTNNNNNAGG	1 cut(s)	2991
XapI	RAATTY	6 cut(s)	2006, 2586, 2764, 2842, 2866, 2920
XmnI	GAANNNNTTC	4 cut(s)	32, 133, 848, 2448
XspI	CTAG	6 cut(s)	749, 936, 1473, 1482, 1716, 1725
Zsp2I	ATGCAT	2 cut(s)	1564, 1807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.